BAC Information

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BAC

Clone NameB6Ng01-093D08
Chromosome11 (Build37)
Map Location 70,845,729 - 70,846,872
singlet/doubletsinglet
Overlap gene6330403K07Rik
Upstream geneDlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12
Downstream geneLOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1, Aipl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093D08.bB6Ng01-093D08.g
ACCDH904758DH904759
length1,1371,100
definitionDH904758|Mus musculus domesticus DNA, BAC clone: B6Ng01-093D08, 5' end.DH904759|Mus musculus domesticus DNA, BAC clone: B6Ng01-093D08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctagcacagtcctcctatgggccgcagcaaaggaaagccctca
gtctcatctcatggaacacacgaattctatctaggcctccatctctgaag
acttgtggtctacttttccacacagtccaaaaacccatcttgagcgttga
ctctctggtggtcagttctggtaaccacaaaacctgaaatggcaaaaata
cacagcccgcgtcagccccaactcctggtgggtcagaatcatcttgacaa
aacgccactcacctcctccagcagccagccatatccgctgctctcccagg
tccgccagcttggtgctcagagtcctaaccaaaagaactaggcacaactg
gctcatcccggtgtgacgcagcatcatgaggctccagcactccgagccag
ggtgctgattctccttgcggtaccttctcagggaggccgcagactcgggt
ctggttcatcctttaaacaacagaaggctggactctgctctacaaacacc
aaaatgctaggccctcacgtcacaaagtggtaggatacagagacatccta
attacaaactgggttcaattcaatccaggattatactaattgcactcaat
gtacgggtgcaagcagcacagctatttcattgcctgcagcgactctggac
cgtctgatgaacagttagacaaagcgacaacaaagaaaagaagcatcgaa
tgctagatgaagggggtgcagcgcgtttccgaaacaaaaggctacgcttc
tcattcctctcccctcccctcccctcgactctgcgcccaccccgtcgggg
ccctggccacttaggcaagctgcaaatggatataggtgaagatgcaggag
gtgatggagaaaggcgatggccgcgtagatgaagatggagaggtgcggga
agtggtcaaggtagcagccctcttccactggaggctcttcttccttgggc
tctggacgcacggcggcctttcgggacagcccagcgcgggtccccggagc
cctcccactcaaacgcgaccagatttctgcagccgaggatgcagacttag
gtgcccgcgcagtgtggctcctccaagggaggcttatcgaacagtctcgt
actcaggtcggatcgaaatacaatctgctttggaccc
gaattcttggtttagctctttatcccatttttaatagagttatttggttc
tctgaagtctagcttcttgagttctttgtatatattggatattatccctg
tatcagatgtaggattggtcttttcccaatctgttaggtgtccttttgtc
ttattgacagtgtcctttgctttaaagaatctttgcaattttatgaggta
ccattggtcaattcttctttttaaagcataatcttttggtgttctgttca
gaaaattttcccctgtgaccatgtgctggaggctcctccccactttcttt
tctattattttcagtgtatctggttttatgtggaggtccttgatccacat
ggacttgaggtttgtacaaggagataagaatggattgatcaccatggact
aaggctaatcttcaatgacaacataaataatagaaagccaacattcacat
ggaagctgaacaacactaactcaatgataacttggtcaaggaaaaaagaa
gaaagaagttaaagactttttagagtttaatgaaaatgaaggcacaacat
actcaaacttatgggacacaatgaaagcattcctaagaggaaagctcata
gctctgagtgtcaccaaaaagaaactagagagaccacacactagcagctt
gacagcacacctaaaagctctagaacaaaaggaatcaaattcatccatga
ggagtagatggcaggaaaataatcaaactcagggctgaaatcaacccaag
tagaaacaaaaagactgtacagagaatcaaccaaaacaggagctggtttt
tttgagaaaatcacagatagataaaccgttagccagacactagagggcac
agatacggtatccttattaactaaatcagaaatttaaatggaagataaca
agaaaacctgatgaaatccaaagcttcatcgattcctaaacaaaggctat
actcacaaaactgaaaacctgatgaatggacattttgtagacgatacaag
gatgaaagttaatcaggtccgattaacgatctaaagaaccatattgccct
agaaatataagcagaacttaatagccttccgccaaattaagccatggtac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_70845729_70846872
seq2: B6Ng01-093D08.b_43_1179

seq1  GAATTCTCTAGCACAGTCCTCCTATGGGCCGCAGCAAAGGAAAGCCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGCACAGTCCTCCTATGGGCCGCAGCAAAGGAAAGCCCTCA  50

seq1  GTCTCATCTCATGGAACACACGAATTCTATCTAGGCCTCCATCTCTGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATCTCATGGAACACACGAATTCTATCTAGGCCTCCATCTCTGAAG  100

seq1  ACTTGTGGTCTACTTTTCCACACAGTCCAAAAACCCATCTTGAGCGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGGTCTACTTTTCCACACAGTCCAAAAACCCATCTTGAGCGTTGA  150

seq1  CTCTCTGGTGGTCAGTTCTGGTAACCACAAAACCTGAAATGGCAAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGTGGTCAGTTCTGGTAACCACAAAACCTGAAATGGCAAAAATA  200

seq1  CACAGCCCGCGTCAGCCCCAACTCCTGGTGGGTCAGAATCATCTTGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCCGCGTCAGCCCCAACTCCTGGTGGGTCAGAATCATCTTGACAA  250

seq1  AACGCCACTCACCTCCTCCAGCAGCCAGCCATATCCGCTGCTCTCCCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCCACTCACCTCCTCCAGCAGCCAGCCATATCCGCTGCTCTCCCAGG  300

seq1  TCCGCCAGCTTGGTGCTCAGAGTCCTAACCAAAAGAACTAGGCACAACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCAGCTTGGTGCTCAGAGTCCTAACCAAAAGAACTAGGCACAACTG  350

seq1  GCTCATCCCGGTGTGACGCAGCATCATGAGGCTCCAGCACTCCGAGCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATCCCGGTGTGACGCAGCATCATGAGGCTCCAGCACTCCGAGCCAG  400

seq1  GGTGCTGATTCTCCTTGCGGTACCTTCTCAGGGAGGCCGCAGACTCGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGATTCTCCTTGCGGTACCTTCTCAGGGAGGCCGCAGACTCGGGT  450

seq1  CTGGTTCATCCTTTAAACAACAGAAGGCTGGACTCTGCTCTACAAACACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCATCCTTTAAACAACAGAAGGCTGGACTCTGCTCTACAAACACC  500

seq1  AAAATGCTAGGCCCTCACGTCACAAAGTGGTAGGATACAGAGACATCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTAGGCCCTCACGTCACAAAGTGGTAGGATACAGAGACATCCTA  550

seq1  ATTACAAACTGGGTTCAATTCAATCCAGGATTATACTAATTGCACTCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAACTGGGTTCAATTCAATCCAGGATTATACTAATTGCACTCAAT  600

seq1  GTACGGGTGCAAGCAGCACAGCTATTTCATTGCCTGCAGCGACTCTGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGGGTGCAAGCAGCACAGCTATTTCATTGCCTGCAGCGACTCTGGAC  650

seq1  CGTCTGATGAACAGTTAGACAAAGCGACAACAAAGAAAAGAAGCATCGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGATGAACAGTTAGACAAAGCGACAACAAAGAAAAGAAGCATCGAA  700

seq1  TGCTAGATGAAGGGGGTGCAGCGCGTTTCCGAAACAAAAGGCTACGCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGATGAAGGGGGTGCAGCGCGTTTCCGAAACAAAAGGCTACGCTTC  750

seq1  TCATTCCTCTCCCCTCCCCTCCCCTCGACTCTGCGCCCACCCCGTCGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTCTCCCCTCCCCTCCCCTCGACTCTGCGCCCACCCCGTCGGGG  800

seq1  CCCTGGCCACTTAGGCAAGCTGCAAATGGATATAGGTGAAGATGCAGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCCACTTAGGCAAGCTGCAAATGGATATAGGTGAAGATGCAGGAG  850

seq1  GTGATGGAG-AAGGCGATGGCCGCGTAGATGAAGATGGAGAGGTGCGGGA  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGAGAAAGGCGATGGCCGCGTAGATGAAGATGGAGAGGTGCGGGA  900

seq1  AGTGGTCAAGGTAGCAGCCCTCTTCCACTGGAGGCTCTTCTTCCTTGGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCAAGGTAGCAGCCCTCTTCCACTGGAGGCTCTTCTTCCTTGGGC  950

seq1  TCTGGACGCACGGCGGCCTTTCGGGACAGCCCAGCGCGGGTCCCCGGAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACGCACGGCGGCCTTTCGGGACAGCCCAGCGCGGGTCCCCGGAGC  1000

seq1  CCTCCCACTCAAACGCCGACCAGATTTCCTGCCAGCCGAGGATGCAGACT  1049
      ||||||||||||||| ||||||||||| ||| ||||||||||||||||||
seq2  CCTCCCACTCAAACG-CGACCAGATTT-CTG-CAGCCGAGGATGCAGACT  1047

seq1  TAGGTGCACGCGCAGTGTGGCCCTCCTCCAGGGGAGGCTTATCGAACAGG  1099
      ||||||| ||||||||||||  |||||||| |||||||||||||||||| 
seq2  TAGGTGCCCGCGCAGTGTGG--CTCCTCCAAGGGAGGCTTATCGAACAG-  1094

seq1  CCCTCGTACTCAGGGTCAGAATCGAAATAC-ATCTGCTCTGGACCC  1144
        |||||||||| |||| | |||||||||| ||||||| |||||||
seq2  -TCTCGTACTCA-GGTC-GGATCGAAATACAATCTGCTTTGGACCC  1137