BAC Information

Click to search

BAC

Clone NameB6Ng01-093I23
Chromosome11 (Build37)
Map Location 64,437,980 - 64,580,652
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik, EG544785, Hs3st3a1
Downstream geneLOC626959, Elac2, AU040829, 1700086D15Rik, LOC100041790, Myocd, Map2k4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093I23.bB6Ng01-093I23.g
ACCDH905016DH905017
length1,118809
definitionDH905016|Mus musculus domesticus DNA, BAC clone: B6Ng01-093I23, 5' end.DH905017|Mus musculus domesticus DNA, BAC clone: B6Ng01-093I23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,437,980 - 64,439,099)(64,579,846 - 64,580,652)
sequence
gaattcctacaaaaacagtttatatgtgaagatgcttcctgagaaatctg
acacctgagtcaataaattggacagactcactctaacataggcagtatca
gtttggaaggaattagaataaggataaaggaacagactacccagccacac
acttgagccttctcgagtggatgtagtttgagaaggtttgtctcctaaca
gtgccacttcccatgggccaagcttattcgaaccaccacactgagctaaa
ctgtttgcatattttcttgcttccagacttcttcatattcaaagaaaaca
aaaagcacttgttgcttaagagagttttggatgggtgtggtctattcaaa
gtctcaagcatcaggaaacttatgctttttctcccttgtaggaaggaatg
gattgttttgaagatgaagtcagtgaaagtgaggagtgtagactgtaact
caaatagggtgggtgccctactctgttcctttctcctggccacttccagc
tcggtccacattttctggtttcatctgcaaggagacaagaggaatggtgc
tgtgtggtctgtggtctggcatctgagtttgagtgtgagtttctgttatt
acacttactggctctgtgtctgtggtcagagtttccctgtctctcaattg
ggcataagaacagacttcggagtctttttgagaaacacttcccacattgc
cacggacctggtaaaatggcagtggatgcagtgtcctctctggtgattgg
actcattttctattcctcagcttctgttttgctcttgaccccagcttcct
ggtactaaaactttcctgctctttctttcaggtctagtctatttggattt
ttttggagacggttttagctctcagattataccctagacatggaagtatg
tccctgagaagccagcactgtgcagacttctatatttcccatgtgagttt
tagtactaaggagtgaataaggaagccactacagagaagcagagcccttt
tataatgatgttacttattgcagggcttcttggacattcctaagtatgtc
ttcaagcaatgctgctgctatagatctctggcgccagaaagcaaaagagg
tgtataataggggtcatc
gaattccatgtcagttggtgaatggatgaatgaaatgaagcgtatccata
caatgatttataatacgcaagagcatttcaaagaaatgtagatgagcttc
taagaccttacgttaagtaaagaaatctatggttctctttatatgaactt
cataaaagtaacacctatagagactgaatacagaaagcaggtcggaggtt
gttcaggtctaggaggggtaggagccggaaataccacaaactaggtttca
tgagagttgcacaattgtttagctatttaaaatcattattatccaaatgg
ccaacatatttatgagaaaaagacaacaacctcatgaactgtcagggaaa
cgttagtcaaaaccacagtggactgtcatctcacctcagtcaaaatggct
actctgaatggagatgattgctctcgagaatgtaaggaacatattgcttg
ggggtgagataaaggggtagagatatcatgatgaagcaatctgtgtagag
cacagacatcctatgcaggggcttatgtcccagaaaggatatcagtattt
tagaggttgtgaagactccaggtaggagataccaaacctggccaagtgtc
ccatggacccccagtttcatcatttataagatggaagatgtgagctaatt
ataactctctagccttcccatgttgtgtttaaaactttcctgcttatgtt
actaacatgcatatagaaactgtctatcacaggattttccctgtccaatt
acattagggcagcgggaggcctgtgatttgaacagagaaaagggaggtgg
tgggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_64437980_64439099
seq2: B6Ng01-093I23.b_51_1168

seq1  GAATTCCTACAAAAACAGTTTATATGTGAAGATGCTTCCTGAGAAATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACAAAAACAGTTTATATGTGAAGATGCTTCCTGAGAAATCTG  50

seq1  ACACCTGAGTCAATAAATTGGACAGACTCACTCTAACATAGGCAGTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGAGTCAATAAATTGGACAGACTCACTCTAACATAGGCAGTATCA  100

seq1  GTTTGGAAGGAATTAGAATAAGGATAAAGGAACAGACTACCCAGCCACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAAGGAATTAGAATAAGGATAAAGGAACAGACTACCCAGCCACAC  150

seq1  ACTTGAGCCTTCTCGAGTGGATGTAGTTTGAGAAGGTTTGTCTCCTAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGCCTTCTCGAGTGGATGTAGTTTGAGAAGGTTTGTCTCCTAACA  200

seq1  GTGCCACTTCCCATGGGCCAAGCTTATTCGAACCACCACACTGAGCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACTTCCCATGGGCCAAGCTTATTCGAACCACCACACTGAGCTAAA  250

seq1  CTGTTTGCATATTTTCTTGCTTCCAGACTTCTTCATATTCAAAGAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGCATATTTTCTTGCTTCCAGACTTCTTCATATTCAAAGAAAACA  300

seq1  AAAAGCACTTGTTGCTTAAGAGAGTTTTGGATGGGTGTGGTCTATTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCACTTGTTGCTTAAGAGAGTTTTGGATGGGTGTGGTCTATTCAAA  350

seq1  GTCTCAAGCATCAGGAAACTTATGCTTTTTCTCCCTTGTAGGAAGGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAGCATCAGGAAACTTATGCTTTTTCTCCCTTGTAGGAAGGAATG  400

seq1  GATTGTTTTGAAGATGAAGTCAGTGAAAGTGAGGAGTGTAGACTGTAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTTTGAAGATGAAGTCAGTGAAAGTGAGGAGTGTAGACTGTAACT  450

seq1  CAAATAGGGTGGGTGCCCTACTCTGTTCCTTTCTCCTGGCCACTTCCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGGGTGGGTGCCCTACTCTGTTCCTTTCTCCTGGCCACTTCCAGC  500

seq1  TCGGTCCACATTTTCTGGTTTCATCTGCAAGGAGACAAGAGGAATGGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTCCACATTTTCTGGTTTCATCTGCAAGGAGACAAGAGGAATGGTGC  550

seq1  TGTGTGGTCTGTGGTCTGGCATCTGAGTTTGAGTGTGAGTTTCTGTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTCTGTGGTCTGGCATCTGAGTTTGAGTGTGAGTTTCTGTTATT  600

seq1  ACACTTACTGGCTCTGTGTCTGTGGTCAGAGTTTCCCTGTCTCTCAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTACTGGCTCTGTGTCTGTGGTCAGAGTTTCCCTGTCTCTCAATTG  650

seq1  GGCATAAGAACAGACTTCGGAGTCTTTTTGAGAAACACTTCCCACATTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAAGAACAGACTTCGGAGTCTTTTTGAGAAACACTTCCCACATTGC  700

seq1  CACGGACCTGGTAAAATGGCAGTGGATGCAGTGTCCTCTCTGGTGATTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGACCTGGTAAAATGGCAGTGGATGCAGTGTCCTCTCTGGTGATTGG  750

seq1  ACTCATTTTCTATTCCTCAGCTTCTGTTTTGCTCTTGACCCCAGCTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTTTCTATTCCTCAGCTTCTGTTTTGCTCTTGACCCCAGCTTCCT  800

seq1  GGTACTAAAACTTTCCTGCTCTTTC-TTCAGGTCTAGTCTATTTGGATTT  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGTACTAAAACTTTCCTGCTCTTTCTTTCAGGTCTAGTCTATTTGGATTT  850

seq1  TTTTGGAGACGGTTTTAGCTCTCAGATTATACCCTAGACATGGAAGTATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGACGGTTTTAGCTCTCAGATTATACCCTAGACATGGAAGTATG  900

seq1  TCCCTGAGAAGCCAGCACTGTGCAGACTTCTATATTTCCCAATGTGAGTT  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCCTGAGAAGCCAGCACTGTGCAGACTTCTATATTTCCC-ATGTGAGTT  949

seq1  TTAGTACTAAGGAGTGAATAAGGAAGGCACTACAGAGAAGCAGAGCCC-T  998
      |||||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  TTAGTACTAAGGAGTGAATAAGGAAGCCACTACAGAGAAGCAGAGCCCTT  999

seq1  TTATAATGATGTTAACTAATTGCAGGGCTTCTTGGACATTTCCTAAGTAT  1048
      ||||||||||||| ||| |||||||||||||||||||| |||||||||||
seq2  TTATAATGATGTT-ACTTATTGCAGGGCTTCTTGGACA-TTCCTAAGTAT  1047

seq1  GTCTTCAAAGCAATGCTGCTGACTAT-GATC-CTGGCAGCAGGAAAGC-A  1095
      |||||| |||||||||||||| |||| |||| ||||| ||  |||||| |
seq2  GTCTTC-AAGCAATGCTGCTG-CTATAGATCTCTGGC-GCCAGAAAGCAA  1094

seq1  AAGAGGCTGATAATAGGGGGTCATC  1120
      ||||||   |||||| |||||||||
seq2  AAGAGGTGTATAATA-GGGGTCATC  1118

seq1: chr11_64579846_64580652
seq2: B6Ng01-093I23.g_71_879 (reverse)

seq1  CCCCCCCCACCACCTCCCTTTTCTCTG-TCAAATCACAGGCCTCCCGCTG  49
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCCCCCCCACCACCTCCCTTTTCTCTGTTCAAATCACAGGCCTCCCGCTG  50

seq1  CCCTAATGTAATTGGACAGGGAAAATCCTGTGATAGACAGTTTCTATATG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATGTAATTGGACAGGGAAAATCCTGTGATAGACAGTTTCTATATG  100

seq1  CATGTTAGTAACATAAGCAGG-AAGTTTTAAACACAACATGGGAAGGCTA  148
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATGTTAGTAACATAAGCAGGAAAGTTTTAAACACAACATGGGAAGGCTA  150

seq1  GAGAGTTATAATTAGCTCACATCTTCCATCTTATAAATGATGAAACTGGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTATAATTAGCTCACATCTTCCATCTTATAAATGATGAAACTGGG  200

seq1  GGTCCATGGGACACTTGGCCAGGTTTGGTATCTCCTACCTGGAGTCTTCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATGGGACACTTGGCCAGGTTTGGTATCTCCTACCTGGAGTCTTCA  250

seq1  CAACCTCTAAAATACTGATATCCTTTCTGGGACATAAGCCCCTGCATAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCTAAAATACTGATATCCTTTCTGGGACATAAGCCCCTGCATAGG  300

seq1  ATGTCTGTGCTCTACACAGATTGCTTCATCATGATATCTCTACCCCTTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTGCTCTACACAGATTGCTTCATCATGATATCTCTACCCCTTTA  350

seq1  TCTCACCCCCAAGCAATATGTTCCTTACATTCTCGAGAGCAATCATCTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCCCCAAGCAATATGTTCCTTACATTCTCGAGAGCAATCATCTCC  400

seq1  ATTCAGAGTAGCCATTTTGACTGAGGTGAGATGACAGTCCACTGTGGTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAGTAGCCATTTTGACTGAGGTGAGATGACAGTCCACTGTGGTTT  450

seq1  TGACTAACGTTTCCCTGACAGTTCATGAGGTTGTTGTCTTTTTCTCATAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAACGTTTCCCTGACAGTTCATGAGGTTGTTGTCTTTTTCTCATAA  500

seq1  ATATGTTGGCCATTTGGATAATAATGATTTTAAATAGCTAAACAATTGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTGGCCATTTGGATAATAATGATTTTAAATAGCTAAACAATTGTG  550

seq1  CAACTCTCATGAAACCTAGTTTGTGGTATTTCCGGCTCCTACCCCTCCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTCATGAAACCTAGTTTGTGGTATTTCCGGCTCCTACCCCTCCTA  600

seq1  GACCTGAACAACCTCCGACCTGCTTTCTGTATTCAGTCTCTATAGGTGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGAACAACCTCCGACCTGCTTTCTGTATTCAGTCTCTATAGGTGTT  650

seq1  ACTTTTATGAAGTTCATATAAAGAGAACCATAGATTTCTTTACTTAACGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATGAAGTTCATATAAAGAGAACCATAGATTTCTTTACTTAACGT  700

seq1  AAGGTCTTAGAAGCTCATCTACATTTCTTTGAAATGCTCTTGCGTATTAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTTAGAAGCTCATCTACATTTCTTTGAAATGCTCTTGCGTATTAT  750

seq1  AAATCATTGTATGGATACGCTTCATTTCATTCATCCATTCACCAACTGAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTGTATGGATACGCTTCATTTCATTCATCCATTCACCAACTGAC  800

seq1  ATGGAATTC  807
      |||||||||
seq2  ATGGAATTC  809