BAC Information

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BAC

Clone NameB6Ng01-094J10
Chromosome11 (Build37)
Map Location 99,818,911 - 99,973,403
singlet/doubletdoublet
Overlap geneA030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36
Upstream geneRara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286
Downstream geneKrt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094J10.bB6Ng01-094J10.g
ACCDH905767DH905768
length1,0831,136
definitionDH905767|Mus musculus domesticus DNA, BAC clone: B6Ng01-094J10, 5' end.DH905768|Mus musculus domesticus DNA, BAC clone: B6Ng01-094J10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,818,911 - 99,820,009)(99,972,256 - 99,973,403)
sequence
gaattctttctgttgactagaattctatttcagataccataccttcttat
ccagccatgacaacacagaggatcttggctgtcctggggaaaacatgagg
tagaaatgtacccggtaaaacaggtttcatccccagaggacacctcgctg
acctgctattaacccccagactcattaacatctccctgtcatgcattacc
ctagtaaaatccctgcctaaccatataacgcagatgcaaagcagctcctg
aagattaaaggacaggactctctcatctccaagatggactctgcccctcc
acaaaaacttgatgaataatcttcccactcatattcaatatcttccctct
ttgttcctttaccttcaaatccattgttcaggtgacagcctgactggcca
atcatttctccaaagtccttggctccataaaaatctggattttgccttgt
ttccatgatacctaaaggcagaagtgaaccagtttgtgataaaatataaa
aataaacaaacagaaagcattttattcagtcctcgtttacaacattttag
agtgtgttaggacattgtcacacagatatagttatgattttttaataact
caaagtttcttccacaagtgttaaaaaaactaaatataagcctcagaata
ataatgtttaagcaataaaagtaccaaaataatgggtttttttcaaaaat
tcaggagttctcatattttctgtaatttttgatcagataactccagcata
cctagtatgtgctttcttcattgaataagcactctctcttcatctctctc
agaaatttggtccccaacatatctaatttctttctttcatattttatagt
ttctatgcacaggtttctcctttactatctttggaggttgggaacaattg
tgtgaaataatgccttttgggcatgatgacatcatgaacaggagctgtga
ttgtctatcggagacctgcatgagatgaaagcagtcgtaattcggcatgt
gagagcgtagtcatgaagcctgtcctagctgatgatctttacagtgagct
gctggggtagctaatataaagtctagagatgtt
gaattcttagaccataaaagccgagtgagagggggtaaggactcggtacc
tctgagcagaggctcatgttctccagatgggagctgctggcaagcatggt
tgtgcaggaagagctggcccttgggccctgaaatatggaggcagagcatg
gccacaagaggactggagaggtatggctttcccctgggcccagtggctcc
ctggacactcactatggcaagacacatggctcattctgagcagacttcca
aagcctggggcaataaccaaaatctctctcaggggagaggacttttattt
tgtttttgtattttgagagagatgatattctagagcattttgggcttagt
aaggaggggatttcaagacctaggcagggtaaggtagatccaatgggaat
taaaaaaccctatcagggtcctggagagtggaacccctagagttttgaaa
ggaatcactgtccaaggctactgtcattcttcatcagctctcctgaagat
caccccctcctgccccccactgaagggcagtcagggatcgggtgggtgat
ctccttggccagctgatatgtgttcagacaatcctgagtccagtgaggcg
tagtggctatggagataggcagaagtttgggaacctgagggattggaaat
ggagcagaggagacttgagaatcccgcccaggctgagtcacccagtggaa
ggatcagggtagaatgtcactgatatagtggcatgacaacttagccccca
gacctctgagtactgcttatggagggtggaaaggcctacacagcagctac
tgagacgggacataaaggaatcaaatgtcatggtttccaagggaagtcta
attgacctgtccccgtatcagccaatttcatggtgtcagggaggcaaggg
acagtagcatcatgcttggccaaagcccttaaatagtgatatatccttac
tgaagatttccgtgcagacccaggctgctcagcttgattggttttgcaga
tagacataacatttaactataatcaatattcaaatattgagaatttttgc
tcactgaatctggttagtcagttttctagatcatgaatggcctgagtctt
tcaccatcaggcccatgaacaatttctggatccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_99818911_99820009
seq2: B6Ng01-094J10.b_43_1125

seq1  GAATTCTTTCTGTTGACTAGAATTCTATTTCAGATACCATACCTTCTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGTTGACTAGAATTCTATTTCAGATACCATACCTTCTTAT  50

seq1  CCAGCCATGACAACACAGAGGATCTTGGCTGTCCTGGGGAAAACATGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCATGACAACACAGAGGATCTTGGCTGTCCTGGGGAAAACATGAGG  100

seq1  TAGAAATGTACCCGGTAAAACAGGTTTCATCCCCAGAGGACACCTCGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGTACCCGGTAAAACAGGTTTCATCCCCAGAGGACACCTCGCTG  150

seq1  ACCTGCTATTAACCCCCAGACTCATTAACATCTCCCTGTCATGCATTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTATTAACCCCCAGACTCATTAACATCTCCCTGTCATGCATTACC  200

seq1  CTAGTAAAATCCCTGCCTAACCATATAACGCAGATGCAAAGCAGCTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAAATCCCTGCCTAACCATATAACGCAGATGCAAAGCAGCTCCTG  250

seq1  AAGATTAAAGGACAGGACTCTCTCATCTCCAAGATGGACTCTGCCCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAAAGGACAGGACTCTCTCATCTCCAAGATGGACTCTGCCCCTCC  300

seq1  ACAAAAACTTGATGAATAATCTTCCCACTCATATTCAATATCTTCCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACTTGATGAATAATCTTCCCACTCATATTCAATATCTTCCCTCT  350

seq1  TTGTTCCTTTACCTTCAAATCCATTGTTCAGGTGACAGCCTGACTGGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCTTTACCTTCAAATCCATTGTTCAGGTGACAGCCTGACTGGCCA  400

seq1  ATCATTTCTCCAAAGTCCTTGGCTCCATAAAAATCTGGATTTTGCCTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCTCCAAAGTCCTTGGCTCCATAAAAATCTGGATTTTGCCTTGT  450

seq1  TTCCATGATACCTAAAGGCAGAAGTGAACCAGTTTGTGATAAAATATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGATACCTAAAGGCAGAAGTGAACCAGTTTGTGATAAAATATAAA  500

seq1  AATAAACAAACAGAAAGCATTTTATTCAGTCCTCGTTTACAACATTTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAAACAGAAAGCATTTTATTCAGTCCTCGTTTACAACATTTTAG  550

seq1  AGTGTGTTAGGACATTGTCACACAGATATAGTTATGATTTTTTAATAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTTAGGACATTGTCACACAGATATAGTTATGATTTTTTAATAACT  600

seq1  CAAAGTTTCTTCCACAAGTGTTAAAAAAACTAAATATAAGCCTCAGAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTTCTTCCACAAGTGTTAAAAAAACTAAATATAAGCCTCAGAATA  650

seq1  ATAATGTTTAAGCAATAAAAGTACCAAAATAATGGGTTTTTTTCAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTTTAAGCAATAAAAGTACCAAAATAATGGGTTTTTTTCAAAAAT  700

seq1  TCAGGAGTTCTCATATTTTCTGTAATTTTTGATCAGATAACTCCAGCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGTTCTCATATTTTCTGTAATTTTTGATCAGATAACTCCAGCATA  750

seq1  CCTAGTATGTGCTTTCTTCATTGAATAAGCACTCTCTCTTCATCTCTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTATGTGCTTTCTTCATTGAATAAGCACTCTCTCTTCATCTCTCTC  800

seq1  AGAAAATTTGGTCCCCAACATATCTAATTTCTTTCTTTCATATTTTATAG  850
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-AAATTTGGTCCCCAACATATCTAATTTCTTTCTTTCATATTTTATAG  849

seq1  TTTTCTATGCACAGGTTTCTCCTTTACTATCTTTGGAGGTTGGGAACAAT  900
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTCTATGCACAGGTTTCTCCTTTACTATCTTTGGAGGTTGGGAACAAT  898

seq1  TGTTGTGAAATAATGCCTTTTGGGCATGATGACATCATGAACAGGAGCTG  950
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-TGTGAAATAATGCCTTTTGGGCATGATGACATCATGAACAGGAGCTG  947

seq1  TGATTGTCTATCGAAGACCTGCATGAGATGAAAGCAGTCGTAATTCCGGC  1000
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  TGATTGTCTATCGGAGACCTGCATGAGATGAAAGCAGTCGTAATT-CGGC  996

seq1  ATGTGAGGAGCGGTAGTCATGAAGCCCTGTCCCTAGCTGATGATCTTTAA  1050
      |||||| |||| |||||||||||| ||||| ||||||||||||||||| |
seq2  ATGTGA-GAGC-GTAGTCATGAAG-CCTGT-CCTAGCTGATGATCTTT-A  1041

seq1  CAGTTGAAGGCTGCTGGGGTAGCTAATATAAAGGTTCTTAAGAGATGTT  1099
      ||| |||  ||||||||||||||||||||||||  |||  |||||||||
seq2  CAG-TGA--GCTGCTGGGGTAGCTAATATAAAG--TCT--AGAGATGTT  1083

seq1: chr11_99972256_99973403
seq2: B6Ng01-094J10.g_68_1203 (reverse)

seq1  AAAGGATCCAGGAAATGTCTCACTGGGCCCTGATGGTGAAAGACTCAGGG  50
      ||||||||||| || ||| ||| |||| ||||||||||||||||||| ||
seq2  AAAGGATCCAGAAATTGT-TCA-TGGG-CCTGATGGTGAAAGACTCA-GG  46

seq1  CCATTCATGGATCTAGGAAAAACTGACTTACCAGATTCAGTGAGCAAAAA  100
      |||||||| |||||||  |||||||||| |||||||||||||||||||| 
seq2  CCATTCAT-GATCTAG--AAAACTGACTAACCAGATTCAGTGAGCAAAA-  92

seq1  TATTCTCAATATTTGGAATA-TGATTATAGTAAAATGTTATTGTCTATCT  149
       ||||||||||||| ||||| |||||||||| |||||||| |||||||||
seq2  -ATTCTCAATATTT-GAATATTGATTATAGTTAAATGTTA-TGTCTATCT  139

seq1  GCAAAACCAATCCAGCTGAGCAGCCTGGGTTCTGCACGGAAATCTTCAGT  199
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  GCAAAACCAATCAAGCTGAGCAGCCTGGG-TCTGCACGGAAATCTTCAGT  188

seq1  AAGGATATATCACTATTTAAGGGCTTTGGCCAAGCATGATGCTACTGTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATATATCACTATTTAAGGGCTTTGGCCAAGCATGATGCTACTGTCC  238

seq1  CTTGCCTCCCTGACACCATGAAATTGGCTGATACGGGGGACAGGTCAATT  299
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTGCCTCCCTGACACCATGAAATTGGCTGATAC-GGGGACAGGTCAATT  287

seq1  AGACTTCCCTTGGAAAACCATGACATTTGATTCCTTTATGTCCCGTCTCA  349
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGACTTCCCTTGG-AAACCATGACATTTGATTCCTTTATGTCCCGTCTCA  336

seq1  GTAGCTGCTGTGTAGGCC-TTCCACCCTCCATAAGCAGTACTCAGAGGTC  398
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTAGCTGCTGTGTAGGCCTTTCCACCCTCCATAAGCAGTACTCAGAGGTC  386

seq1  TGGGGGCTAAGTTGTCATGCCACTATATCAGTGACATTCTACCCTGATCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCTAAGTTGTCATGCCACTATATCAGTGACATTCTACCCTGATCC  436

seq1  TTCCACTGGGTGACTCAGCCTGGGCGGGATTCTCAAGTCTCCTCTGCTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTGGGTGACTCAGCCTGGGCGGGATTCTCAAGTCTCCTCTGCTCC  486

seq1  ATTTCCAATCCCTCAGGTTCCCAAACTTCTGCCTATCTCCATAGCCACTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAATCCCTCAGGTTCCCAAACTTCTGCCTATCTCCATAGCCACTA  536

seq1  CGCCTCACTGGACTCAGGATTGTCTGAACACATATCAGCTGGCCAAGGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCACTGGACTCAGGATTGTCTGAACACATATCAGCTGGCCAAGGAG  586

seq1  ATCACCCACCCGATCCCTGACTGCCCTTCAGTGGGGGGCAGGAGGGGGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCACCCGATCCCTGACTGCCCTTCAGTGGGGGGCAGGAGGGGGTG  636

seq1  ATCTTCAGGAGAGCTGATGAAGAATGACAGTAGCCTTGGACAGTGATTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGGAGAGCTGATGAAGAATGACAGTAGCCTTGGACAGTGATTCC  686

seq1  TTTCAAAACTCTAGGGGTTCCACTCTCCAGGACCCTGATAGGGTTTTTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAACTCTAGGGGTTCCACTCTCCAGGACCCTGATAGGGTTTTTTA  736

seq1  ATTCCCATTGGATCTACCTTACCCTGCCTAGGTCTTGAAATCCCCTCCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCATTGGATCTACCTTACCCTGCCTAGGTCTTGAAATCCCCTCCTT  786

seq1  ACTAAGCCCAAAATGCTCTAGAATATCATCTCTCTCAAAATACAAAAACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCCCAAAATGCTCTAGAATATCATCTCTCTCAAAATACAAAAACA  836

seq1  AAATAAAAGTCCTCTCCCCTGAGAGAGATTTTGGTTATTGCCCCAGGCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAGTCCTCTCCCCTGAGAGAGATTTTGGTTATTGCCCCAGGCTT  886

seq1  TGGAAGTCTGCTCAGAATGAGCCATGTGTCTTGCCATAGTGAGTGTCCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTCTGCTCAGAATGAGCCATGTGTCTTGCCATAGTGAGTGTCCAG  936

seq1  GGAGCCACTGGGCCCAGGGGAAAGCCATACCTCTCCAGTCCTCTTGTGGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCACTGGGCCCAGGGGAAAGCCATACCTCTCCAGTCCTCTTGTGGC  986

seq1  CATGCTCTGCCTCCATATTTCAGGGCCCAAGGGCCAGCTCTTCCTGCACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCTGCCTCCATATTTCAGGGCCCAAGGGCCAGCTCTTCCTGCACA  1036

seq1  ACCATGCTTGCCAGCAGCTCCCATCTGGAGAACATGAGCCTCTGCTCAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCTTGCCAGCAGCTCCCATCTGGAGAACATGAGCCTCTGCTCAGA  1086

seq1  GGTACCGAGTCCTTACCCCCTCTCACTCGGCTTTTATGGTCTAAGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCGAGTCCTTACCCCCTCTCACTCGGCTTTTATGGTCTAAGAATTC  1136