BAC Information

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BAC

Clone NameB6Ng01-095M03
Chromosome11 (Build37)
Map Location 56,246,647 - 56,423,692
singlet/doubletdoublet
Overlap geneLOC624168
Upstream geneAtox1, G3bp, Glra1, Nmur2, LOC100040816
Downstream geneGria1, LOC667878, 1810073G14Rik, Mfap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095M03.bB6Ng01-095M03.g
ACCDH906610DH906611
length1,020772
definitionDH906610|Mus musculus domesticus DNA, BAC clone: B6Ng01-095M03, 5' end.DH906611|Mus musculus domesticus DNA, BAC clone: B6Ng01-095M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,422,654 - 56,423,692)(56,246,647 - 56,247,421)
sequence
gaattcctgctaaccaagtatgacccagaacaggaccacccccacccctt
tccttctcccctcctatcctctcacctccattccccacctcctattttac
cacaatctcagtatttaaactgtcaatctttttcctgtcaaaagcattgg
tgaatagactttgtttgcccctgtaatggatttttcagatgcatctcttt
aatatgttttgatacaggtcttagattatataaaagtttacctgatcatg
caggttaaaaatacacccaacaacctcaatggttactgtgttgaatctga
tattatatagtttttctttttctctctctctctcggaatctatttccttg
atagaaaactcccattttctctttctcagtgatcaaaattatccatgaga
gatggatgtcctagaccactctgtccatcccctagtcatagtggtggact
tggagatggctatgaagccatacctgaagataaaattttgagaatttagt
aaaaataaatagtcgtaagactaatgaaatgagtatgaatgttcataaaa
aactaaaaagtagagatctaccctatagcccaactatatcattcttggat
attgtcactcaaaagataccagtcaacacatttctcatttgtaggtctca
aacattactttaaatctctctctctctctctctctctctctctctctctc
tctctctctcaaacagacacacacacacacagacacacacacacacacac
aacatgaaagcagaactgaaatgaaattgtctgggctaacatgcataact
agtgggaggggtcagagaaaagaataatgatctcacagtataacttacta
aatataacattttggttttttgtttgttttgttttgttttgttttgtttt
ttgtttaggtttgtttggttgagaaaagacaggcccaagtgtgatcagct
cagggaggtctcaggactgacactatttactgaagctatggagtgctcac
aaagggaccttacatgactg
gaattcaaataacacagcctgtgtaggaatgtggaaggtttttcaataat
gtcttggaatgcatggaatccaatgccttaaaaagcacatacaggggctc
agtcaactctcagagtgctgaactaagtagcagagaaggaagaggactaa
gctttaatgatctttaaagggttactagcaaggaaactttggatataagt
atatatccaatgtgtgtctgtttttttatgatattgcattgaatttcaac
cataaaactagatttaacatccttggtgttttggttggctttagttgtca
ccttgacatacactaagagtcatctgaggaaagcctagatttaacaattg
ccttgcctttctccaagttccatgtattagttttatattctactttcttg
tgtttatcattgtgtcttagaaacttgttcttttctaattagagacataa
atagagtagatctaactgggaggagaggtggggaggaactgggaggaaaa
aagaaggggaaactataatcaggatatgtgatatgatatatgataaaaga
atatattttccacaagagtggagaaaaagaaaaaaaaaaggcttgcctaa
gtcatattgacctatggacatgtctgtagagcattgttctgattactaac
taatacaggagagcccagcccactgtgggcagttccatatctaggcacat
tctagctaagttgtataaaaaagtttgtgaacatgaacctgtgaaccata
gaacatgttctcgatggttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_56422654_56423692
seq2: B6Ng01-095M03.b_46_1065 (reverse)

seq1  CAGTCATGTAAGGTTCCTTTTTGTGAGCACTCCATAGCTTCAGT-AATAG  49
      |||||||||||||| ||  ||||||||||||||||||||||||| |||||
seq2  CAGTCATGTAAGGTCCC--TTTGTGAGCACTCCATAGCTTCAGTAAATAG  48

seq1  TGTCAGTCCTTGGGACCTCCCCTTGAGCTGGATCCCACTTTGGGCCTGTC  99
      ||||||||| || ||||||||  |||||| |||| ||| |||||||||||
seq2  TGTCAGTCC-TGAGACCTCCC--TGAGCT-GATCACAC-TTGGGCCTGTC  93

seq1  TTTTCTACAAAACAAAAACAAAAACTAAAACAAAAAAACAAAAACAAAAA  149
      ||||||      |||  | | ||||  ||||||||||   ||||||||| 
seq2  TTTTCT------CAACCAAACAAACCTAAACAAAAAA--CAAAACAAAA-  134

seq1  CAAAAACAAAACAAAACAAAAAAACCAAAATGTTATATTTTAGTAAGTTA  199
        |||||||||||||   ||||||||||||||||||| ||||||||||||
seq2  -CAAAACAAAACAAA--CAAAAAACCAAAATGTTATA-TTTAGTAAGTTA  180

seq1  TAACTGTGAGATCATTATTCCTTTCTCTGACCCCTCCCACTAGTTATGCC  249
      | |||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  T-ACTGTGAGATCATTATTCTTTTCTCTGACCCCTCCCACTAGTTATGCA  229

seq1  TGTTAG-CCAGACAATTTCATTTCAGTTCTGCTTTCATGTTGTGTGTGTG  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCCCAGACAATTTCATTTCAGTTCTGCTTTCATGTTGTGTGTGTG  279

seq1  TGTGTGTGTCTGTGTGTGTGTGTGTCTGTTTGAGAGAGAGAGAGAGAGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTCTGTGTGTGTGTGTGTCTGTTTGAGAGAGAGAGAGAGAGAG  329

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGATTTAAAGTAATGTTTGAGACCTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGATTTAAAGTAATGTTTGAGACCTA  379

seq1  CAAATGAGAAATGTGTTGACTGGTATCTTTTGAGTGACAATATCCAAGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGAAATGTGTTGACTGGTATCTTTTGAGTGACAATATCCAAGAA  429

seq1  TGATATAGTTGGGCTATAGGGTAGATCTCTACTTTTTAGTTTTTTATGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAGTTGGGCTATAGGGTAGATCTCTACTTTTTAGTTTTTTATGAA  479

seq1  CATTCATACTCATTTCATTAGTCTTACGACTATTTATTTTTACTAAATTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATACTCATTTCATTAGTCTTACGACTATTTATTTTTACTAAATTC  529

seq1  TCAAAATTTTATCTTCAGGTATGGCTTCATAGCCATCTCCAAGTCCACCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTTTATCTTCAGGTATGGCTTCATAGCCATCTCCAAGTCCACCA  579

seq1  CTATGACTAGGGGATGGACAGAGTGGTCTAGGACATCCATCTCTCATGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACTAGGGGATGGACAGAGTGGTCTAGGACATCCATCTCTCATGGA  629

seq1  TAATTTTGATCACTGAGAAAGAGAAAATGGGAGTTTTCTATCAAGGAAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGATCACTGAGAAAGAGAAAATGGGAGTTTTCTATCAAGGAAAT  679

seq1  AGATTCCGAGAGAGAGAGAGAAAAAGAAAAACTATATAATATCAGATTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCGAGAGAGAGAGAGAAAAAGAAAAACTATATAATATCAGATTCA  729

seq1  ACACAGTAACCATTGAGGTTGTTGGGTGTATTTTTAACCTGCATGATCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTAACCATTGAGGTTGTTGGGTGTATTTTTAACCTGCATGATCAG  779

seq1  GTAAACTTTTATATAATCTAAGACCTGTATCAAAACATATTAAAGAGATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTTTTATATAATCTAAGACCTGTATCAAAACATATTAAAGAGATG  829

seq1  CATCTGAAAAATCCATTACAGGGGCAAACAAAGTCTATTCACCAATGCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAAAAATCCATTACAGGGGCAAACAAAGTCTATTCACCAATGCTT  879

seq1  TTGACAGGAAAAAGATTGACAGTTTAAATACTGAGATTGTGGTAAAATAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGGAAAAAGATTGACAGTTTAAATACTGAGATTGTGGTAAAATAG  929

seq1  GAGGTGGGGAATGGAGGTGAGAGGATAGGAGGGGAGAAGGAAAGGGGTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGGGAATGGAGGTGAGAGGATAGGAGGGGAGAAGGAAAGGGGTGG  979

seq1  GGGTGGTCCTGTTCTGGGTCATACTTGGTTAGCAGGAATTC  1039
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTCCTGTTCTGGGTCATACTTGGTTAGCAGGAATTC  1020

seq1: chr11_56246647_56247421
seq2: B6Ng01-095M03.g_68_839

seq1  GAATTCAAATAACACAGCCTGTGTAGGAATGTGGAAGGTTTTTCAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATAACACAGCCTGTGTAGGAATGTGGAAGGTTTTTCAATAAT  50

seq1  GTCTTGGAATGCATGGAATCCAATGCCTTAAAAAGCACATACAGGGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGAATGCATGGAATCCAATGCCTTAAAAAGCACATACAGGGGCTC  100

seq1  AGTCAACTCTCAGAGTGCTGAACTAAGTAGCAGAGAAGGAAGAGGACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACTCTCAGAGTGCTGAACTAAGTAGCAGAGAAGGAAGAGGACTAA  150

seq1  GCTTTAATGATCTTTAAAGGGTTACTAGCAAGGAAACTTTGGATATAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAATGATCTTTAAAGGGTTACTAGCAAGGAAACTTTGGATATAAGT  200

seq1  ATATATCCAATGTGTGTCTGTTTTTTTATGATATTGCATTGAATTTCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCAATGTGTGTCTGTTTTTTTATGATATTGCATTGAATTTCAAC  250

seq1  CATAAAACTAGATTTAACATCCTTGGTGTTTTGGTTGGCTTTAGTTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAACTAGATTTAACATCCTTGGTGTTTTGGTTGGCTTTAGTTGTCA  300

seq1  CCTTGACATACACTAAGAGTCATCTGAGGAAAGCCTAGATTTAACAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACATACACTAAGAGTCATCTGAGGAAAGCCTAGATTTAACAATTG  350

seq1  CCTTGCCTTTCTCCAAGTTCCATGTATTAGTTTTATATTCTACTTTCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTTTCTCCAAGTTCCATGTATTAGTTTTATATTCTACTTTCTTG  400

seq1  TGTTTATCATTGTGTCTTAGAAACTTGTTCTTTTCTAATTAGAGACATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATCATTGTGTCTTAGAAACTTGTTCTTTTCTAATTAGAGACATAA  450

seq1  ATAGAGTAGATCTAACTGGGAGGAGAGGTGGGGAGGAACTGGGAGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTAGATCTAACTGGGAGGAGAGGTGGGGAGGAACTGGGAGGAAAA  500

seq1  AAGAAGGGGAAACTATAATCAGGATATGTGATATGATATATGATAAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGGAAACTATAATCAGGATATGTGATATGATATATGATAAAAGA  550

seq1  ATATATTTTCCACAAGAGTGGAGAAAAAGAAAAAAAAAAGGCTTGCCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATATATTTTCCACAAGAGTGGAGAAAAAGAAAAAAAAAAGGCTTGCCTAA  600

seq1  GTCATATTGGCCTATGGACATGTCTGTAGAGCATTGTTCTGATTACTAAC  650
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATTGACCTATGGACATGTCTGTAGAGCATTGTTCTGATTACTAAC  650

seq1  TAATACAGGAGAGCCCAGCCCACTGTGGGCAGTTCCATATCTAGGCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAGGAGAGCCCAGCCCACTGTGGGCAGTTCCATATCTAGGCACAT  700

seq1  TCAAGCTAAGTTGTATAAGAAAGTTAGGTGAACATGAACCTGTGAACCAG  750
      || ||||||||||||||| ||||||  |||||||||||||||||||||| 
seq2  TCTAGCTAAGTTGTATAAAAAAGTT-TGTGAACATGAACCTGTGAACCAT  749

seq1  AGAACAGTGTTCCTCCATGGTTTTT  775
      |||||| |||| ||| |||||||||
seq2  AGAACA-TGTT-CTCGATGGTTTTT  772