BAC Information

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BAC

Clone NameB6Ng01-095P08
Chromosome11 (Build37)
Map Location 40,112,827 - 40,235,344
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256, LOC100039285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095P08.bB6Ng01-095P08.g
ACCDH906754DH906755
length1,1971,029
definitionDH906754|Mus musculus domesticus DNA, BAC clone: B6Ng01-095P08, 5' end.DH906755|Mus musculus domesticus DNA, BAC clone: B6Ng01-095P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,234,104 - 40,235,344)(40,112,827 - 40,113,881)
sequence
gaattcttgcacactagtgctcaacatgctttctccaatgttctttggcc
taggaaagtgtgtcacagtgaggggcttttgctcttcaactaaggtaatg
aagaggatttcacacaaacatatcaagcagaccatcttccaggcagttct
agattttgtcgagttgaaattaaggacaacaacccatgatttttgatttt
ttttccagtttctaattttctatgatgttgaaaaacttaagaactttact
gaagggcaactcaaataaaattatacaacgtcatgttttaaatcctttct
ctagttaataatataaaatttaagaataaacaccttaactccttatattt
ttagaaaaatttgttatttatttaaatagatttataatttgcctgttatt
tgccaagaattatattaacaatgagaagaaacaatttctctgccctaatg
aagtatttctatcagtgctaaaattagaaagtaaatgagaaaggaaataa
tatactcttgacaagtataaatgttggccataaagctgtatggaacaata
aagtttattaaaaagcaggaaataatatttgaccataaacctgaaagaaa
ttaagtattgctttatgtaaaagctccagggttgtggaagtagaatgtat
aataccaaggtaggaaagaatttactgtattcatatcagaaccaggaagg
ccaggttttgcattgcagtgagtgagggatttggtgatcaggaaaaacct
ggagtcatactgaatatgggtctgtaggccatggtaataaatgaattttc
cccccaaatctttggaggtccctcttaattgttagaagaggttcactctt
ttaacaattcctctgtagaactttccagcagaatgtgagccattactgcc
ttggttatgctaggcttttcatatgatgctatgtttctttgctagaaggc
aaaaaatttccatattttaaaccagtttggagagtgacacataatatcat
atctagacagagcgatatctcttttgtattttgtgcacagtacgaataaa
tatgggatattttcactgatgcttcatgatcagtaagtatgtagtctagg
cctcaatgggttctttctgtatccaaggtcttatgagctgggaaagaaca
gggaggagttatcgagtaggctacctatggaaatggagactctcacc
gaattctaaagcatcaattaatccatctcatgttcaatgaagttgtcata
aaatttgaaagggaagtctgtgtttaaagagactgcttgagaagattaag
tcacctgagtacaggccaccgtgctgggttgagaaaggccacatgataat
aaaatggacaggccacagaaccaaagcacctgttaaacagagatgctatc
gtatcttaaacaatttaggcagcttgattcctaagattttttttccttta
gtttcctccaagagctttttaaaatacttataggtttcaaacttggttga
catgcatacacacatacacacacacacacacacttaatgggtacagaaaa
gtacacaaatcattaacgtttaactttagtgacattgaaaaaaggagtca
cagaaccaccttgcagattgaaaagtacaattatgactagttccttggcc
tctgttcccttatgtgtcccttcccagataaattcctcctgaggtgacca
cactctactcctagcaccattggttagtttgcatcatgtcaaaaattgca
taagcagacttacatttactcctcattctcacacatttgtgaaccatcta
tcctgctacatgtggggctacatttcttattatcattgtatgtaagtgaa
agactcggagaggagcccctcactcaggcctcaggacaatagcggacacc
caagaactcacgatagaccgagcttctcgcaaaccacatgaggctttatt
cggggaaagccagagctctgggggacgactcatatcccacgcaggggtag
aggagtcgacctcgagaggaaagaggtcccagtttttataggccctcagg
agaagagaaggaggaagtagggatttccagatgcaacatgtctattctca
gaatggtatgggagggtacagaaagagtctgtgcagtgtagcactcagat
tgccggctgtgttgctggaaattttctgactctttcctcagcaccaatat
cacaaaactgcaatgggcttcatcagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_40234104_40235344
seq2: B6Ng01-095P08.b_49_1245 (reverse)

seq1  GGTGAGAGTCCTCCATTCTCACCATAAGGTATCACCTTCATCCTGATTAA  50
      ||||||||| |||||||    |||| |||||   ||| | ||  || |||
seq2  GGTGAGAGT-CTCCATT---TCCAT-AGGTA--GCCTAC-TC--GA-TAA  39

seq1  CTCCTCCCTGGTTCCTTTTCACCAGCTCATTATGACACTGGGGATACAGG  100
      ||||||||| ||||  |||| |||||||| || |||  |  ||||||| |
seq2  CTCCTCCCT-GTTC--TTTC-CCAGCTCA-TAAGACCTT--GGATACA-G  81

seq1  AAAGACACCCATTTGGAGCCTAGGACCTACCATACTTTACTGAATCATGA  150
      ||||| ||||| |||  ||||||   ||| ||||| |||||| |||||| 
seq2  AAAGA-ACCCA-TTGAGGCCTAG--ACTA-CATAC-TTACTG-ATCATG-  123

seq1  AAGCATCAGTTGAAAATATCCCATTATTTTATTCGTTACTGTGCAACAAA  200
      ||||||||| ||||||||||||||   |||||||| |||||||| |||| 
seq2  AAGCATCAG-TGAAAATATCCCAT--ATTTATTCG-TACTGTGC-ACAA-  167

seq1  AATAACATAAAAGAAGATATCGCTCTGTCCTAAGATATTGATAATTATGT  250
         || | ||||| |||||||||||||||   ||||| |||| |||||||
seq2  ---AATACAAAAG-AGATATCGCTCTGTC--TAGATA-TGAT-ATTATGT  209

seq1  GTCACTCTCCAAACTTGGTTTAAAATATGGAAATTTTTTTGCCTTCTAAG  300
      |||||||||||||| |||||||||||||||||| ||||||||||||| ||
seq2  GTCACTCTCCAAAC-TGGTTTAAAATATGGAAA-TTTTTTGCCTTCT-AG  256

seq1  CAAAGAAACATAGCATCATATGAAAAGCCTAGCATAACCAAGGCAGTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAACATAGCATCATATGAAAAGCCTAGCATAACCAAGGCAGTAAT  306

seq1  GGCTCACATTCTGCTGGAAAGTTCTACAGAGGAATTGTTAAAAGAGTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACATTCTGCTGGAAAGTTCTACAGAGGAATTGTTAAAAGAGTGAA  356

seq1  CCTCTTCTAACAATTAAGAGGGACCTCCAAAGATTTGGGGGGAAAATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTAACAATTAAGAGGGACCTCCAAAGATTTGGGGGGAAAATTCA  406

seq1  TTTATTACCATGGCCTACAGACCCATATTCAGTATGACTCCAGGTTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTACCATGGCCTACAGACCCATATTCAGTATGACTCCAGGTTTTTC  456

seq1  CTGATCACCAAATCCCTCACTCACTGCAATGCAAAACCTGGCCTTCCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCACCAAATCCCTCACTCACTGCAATGCAAAACCTGGCCTTCCTGG  506

seq1  TTCTGATATGAATACAGTAAATTCTTTCCTACCTTGGTATTATACATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATATGAATACAGTAAATTCTTTCCTACCTTGGTATTATACATTCT  556

seq1  ACTTCCACAACCCTGGAGCTTTTACATAAAGCAATACTTAATTTCTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACAACCCTGGAGCTTTTACATAAAGCAATACTTAATTTCTTTCA  606

seq1  GGTTTATGGTCAAATATTATTTCCTGCTTTTTAATAAACTTTATTGTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATGGTCAAATATTATTTCCTGCTTTTTAATAAACTTTATTGTTCC  656

seq1  ATACAGCTTTATGGCCAACATTTATACTTGTCAAGAGTATATTATTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCTTTATGGCCAACATTTATACTTGTCAAGAGTATATTATTTCCT  706

seq1  TTCTCATTTACTTTCTAATTTTAGCACTGATAGAAATACTTCATTAGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTTACTTTCTAATTTTAGCACTGATAGAAATACTTCATTAGGGC  756

seq1  AGAGAAATTGTTTCTTCTCATTGTTAATATAATTCTTGGCAAATAACAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATTGTTTCTTCTCATTGTTAATATAATTCTTGGCAAATAACAGG  806

seq1  CAAATTATAAATCTATTTAAATAAATAACAAATTTTTCTAAAAATATAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATAAATCTATTTAAATAAATAACAAATTTTTCTAAAAATATAAG  856

seq1  GAGTTAAGGTGTTTATTCTTAAATTTTATATTATTAACTAGAGAAAGGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAAGGTGTTTATTCTTAAATTTTATATTATTAACTAGAGAAAGGAT  906

seq1  TTAAAACATGACGTTGTATAATTTTATTTGAGTTGCCCTTCAGTAAAGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACATGACGTTGTATAATTTTATTTGAGTTGCCCTTCAGTAAAGTT  956

seq1  CTTAAGTTTTTCAACATCATAGAAAATTAGAAACTGGAAAAAAAATCAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTTTTTCAACATCATAGAAAATTAGAAACTGGAAAAAAAATCAAA  1006

seq1  AATCATGGGTTGTTGTCCTTAATTTCAACTCGACAAAATCTAGAACTGCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGGGTTGTTGTCCTTAATTTCAACTCGACAAAATCTAGAACTGCC  1056

seq1  TGGAAGATGGTCTGCTTGATATGTTTGTGTGAAATCCTCTTCATTACCTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGATGGTCTGCTTGATATGTTTGTGTGAAATCCTCTTCATTACCTT  1106

seq1  AGTTGAAGAGCAAAAGCCCCTCACTGTGACACACTTTCCTAGGCCAAAGA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAGAGCAAAAGCCCCTCACTGTGACACACTTTCCTAGGCCAAAGA  1156

seq1  ACATTGGAGAAAGCATGTTGAGCACTAGTGTGCAAGAATTC  1241
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGAGAAAGCATGTTGAGCACTAGTGTGCAAGAATTC  1197

seq1: chr11_40112827_40113881
seq2: B6Ng01-095P08.g_65_1093

seq1  GAATTCTAAAGCATCAATTAATCCATCTCATGTTCAATGAAGTTGTCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAGCATCAATTAATCCATCTCATGTTCAATGAAGTTGTCATA  50

seq1  AAATTTGAAAGGGAAGTCTGTGTTTAAAGAGACTGCTTGAGAAGATTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGAAAGGGAAGTCTGTGTTTAAAGAGACTGCTTGAGAAGATTAAG  100

seq1  TCACCTGAGTACAGGCCACCGTGCTGGGTTGAGAAAGGCCACATGATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGAGTACAGGCCACCGTGCTGGGTTGAGAAAGGCCACATGATAAT  150

seq1  AAAATGGACAGGCCACAGAACCAAAGCACCTGTTAAACAGAGATGCTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGACAGGCCACAGAACCAAAGCACCTGTTAAACAGAGATGCTATC  200

seq1  GTATCTTAAACAATTTAGGCAGCTTGATTCCTAAGATTTTTTTTCCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTAAACAATTTAGGCAGCTTGATTCCTAAGATTTTTTTTCCTTTA  250

seq1  GTTTCCTCCAAGAGCTTTTTAAAATACTTATAGGTTTCAAACTTGGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTCCAAGAGCTTTTTAAAATACTTATAGGTTTCAAACTTGGTTGA  300

seq1  CATGCATACACACATACACACACACACACACACTTAATGGGTACAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATACACACATACACACACACACACACACTTAATGGGTACAGAAAA  350

seq1  GTACACAAATCATTAACGTTTAACTTTAGTGACATTGAAAAAAGGAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAAATCATTAACGTTTAACTTTAGTGACATTGAAAAAAGGAGTCA  400

seq1  CAGAACCACCTTGCAGATTGAAAAGTACAATTATGACTAGTTCCTTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCACCTTGCAGATTGAAAAGTACAATTATGACTAGTTCCTTGGCC  450

seq1  TCTGTTCCCTTATGTGTCCCTTCCCAGATAAATTCCTCCTGAGGTGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCCTTATGTGTCCCTTCCCAGATAAATTCCTCCTGAGGTGACCA  500

seq1  CACTCTACTCCTAGCACCATTGGTTAGTTTGCATCATGTCAAAAATTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTACTCCTAGCACCATTGGTTAGTTTGCATCATGTCAAAAATTGCA  550

seq1  TAAGCAGACTTACATTTACTCCTCATTCTCACACATTTGTGAACCATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGACTTACATTTACTCCTCATTCTCACACATTTGTGAACCATCTA  600

seq1  TCCTGCTACATGTGGGGCTACATTTCTTATTATCATTGTATGTAAGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTACATGTGGGGCTACATTTCTTATTATCATTGTATGTAAGTGAA  650

seq1  AGACTCGGAGAGGAGCCCCTCACTCAGGCCTCAGGACAATAGCGGACACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCGGAGAGGAGCCCCTCACTCAGGCCTCAGGACAATAGCGGACACC  700

seq1  CAAGAACTCACGATAGACCGAGCTTCTCGCAAACCACATGAGGCTTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACTCACGATAGACCGAGCTTCTCGCAAACCACATGAGGCTTTATT  750

seq1  CGGGGAAAGCCAGAGCTCTGGGGGACGACTCATATCCCACGCAGGGGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAAAGCCAGAGCTCTGGGGGACGACTCATATCCCACGCAGGGGTAG  800

seq1  AGGAGTCGACCTCGAGAGGAAAGAGGTCCCAGTTTTTATAGGCCCTCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  AGGAGTCGACCTCGAGAGGAAAGAGGTCCCAGTTTTTATAGGCCCTCA--  848

seq1  GGAGAAAGGAGAAGGGAGGGAGTAGGGGATTTCCAGATGCAAACAATGTC  900
      ||||||  ||||| ||||| |||| |||||||||||||||||   |||||
seq2  GGAGAA--GAGAA-GGAGGAAGTA-GGGATTTCCAGATGCAA--CATGTC  892

seq1  TATTCTCAAGAAATGGGTATGGGAGGGGTACAAGGAAAGAGTCTGGTGCA  950
      ||||||| ||||   ||||||||| |||||||  |||||||||| |||| 
seq2  TATTCTC-AGAA--TGGTATGGGA-GGGTACA--GAAAGAGTCT-GTGC-  934

seq1  AGTGTAGCAACTCAGGATTGGCCGGGCTGTGGTTGCTGGGGAAATTTTCT  1000
      |||||||| ||||| |||||  | |||||| ||||||  |||||||||||
seq2  AGTGTAGC-ACTCA-GATTG--CCGGCTGT-GTTGCT--GGAAATTTTCT  977

seq1  GACTCTTT-CTCAGCAACCAATATCACAAACACCTGGCAATGGGCTTCAT  1049
      |||||||| |||||| |||||||||||||| ||   ||||||||||||||
seq2  GACTCTTTCCTCAGC-ACCAATATCACAAA-AC--TGCAATGGGCTTCAT  1023

seq1  CAGTGG  1055
      ||||||
seq2  CAGTGG  1029