BAC Information

Click to search

BAC

Clone NameB6Ng01-096L01
Chromosome11 (Build37)
Map Location 47,389,905 - 47,556,116
singlet/doubletdoublet
Overlap geneLOC100039647
Upstream geneBC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd, LOC628753
Downstream geneLOC192895, Hn1l-ps2, LOC667163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096L01.bB6Ng01-096L01.g
ACCDH907269DH907270
length1,1411,098
definitionDH907269|Mus musculus domesticus DNA, BAC clone: B6Ng01-096L01, 5' end.DH907270|Mus musculus domesticus DNA, BAC clone: B6Ng01-096L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,554,967 - 47,556,116)(47,389,905 - 47,390,985)
sequence
gaattcacataccttactacagagagaatattttgtgtattgtatgcata
tatcacctgtcaattaaaaagcatatagcttagacaggaaatagggaatg
ggacatccaggaggagaaagaattctgggatagagccaggtgggagatcc
actcaggaagatattaggagacagatgcatggcatcagagcacaggtaac
cagccatgtgacagaatgtaggttaaaataattggtttatttaggttatc
atatacttagtgtagagcctatctatatggccaaggtatttgtaaatata
ttttgagtctgagtcctatttctgtgaccattgtactggaatgaataatt
aggcttaactactacatattggcacaccacattgggtgccaaatatatat
ttaaaattattaatattccctatatataaattaatgctggaaatttatac
agcagcaattattccttaaccagcattttccctaaataaccacacagaga
ccctaaaatatttcaatgccgtaggccttagctgggcagattgtcaacta
gctcatctcagttaacctgaccacctatccctacccagccacgtggctac
ctctaccttccaggcctgtgatcatgtccatctctttccacgtctcctgg
ctaaaaggatttcctcttcctcctccttctcatcctcctcctcgtccttg
tccatgtcctcccctccctcctcctcttcttcctcttcctcttccttctt
ccagagttcttttttccctactaggaagtttcaccttccacttcctgccc
agctagttggccatcatgctttttattaaagccaatgccttaggaaggtg
aggaaggacagagacacaatttcacacagcaaactccaacaccttaccat
cccaatattgataactactacctagtccatgttcacactttaataatgga
tgctcaccaggctgaagtcaactgactctgaaagtctgaaagcagaatgt
ggctataactgactttcactttctcagccttggagcttcctaaatttctc
agtcatccatatgcctgggatttgtatttctacaccactattttcttgtc
tgaaaaacaagaaggatcaatgactatcttatttactaatt
gaattcaatggcctgtctaatgttcaaacacagattatgatttgcctttt
attattttgctcctagagcctctcttttatacttcctgtcttcacaagaa
ggtaagtttgagaatctttccagtgtgccaaaccatgggatcctgggagc
actgctaaatggatggtgcccacaccatctcaggttatcctaccaccctg
gaaaagccattttggtttagggtatgtacacacacacacacacacatata
cacacacacacctgtgtgcatatatatgtgtatatgtatgtgtgtataca
tgtatatatgtgtatgtgtgatcaacttaatagatccccacaatggtcat
ttatcactaagcagaaatttcctcacatctttgtgaacaaagagagttta
ttttccctttaccattgttatctaaacagagaatatttttatatccaaga
tctctaaaactttgctgaatttatgttttaagtgactggcaaatggagca
tagacattctgaattaaagatcaacacacactcaaaataaggagctcagt
caaaatcccaaccccatgtatagacttctctgggacttttagagaagcaa
taatgaatgttttagctttcctttctgttagaccacttgtgagcaaagac
acctgcaaccacagacacacatctattgcacagcatatttctgctcatgt
aaggactccaaaatggaagactgtgtttacacatgagtccttttcgatca
ttaaattattaatttggtctttatagtcatgttaatgagaaatgagttcc
taatttatattttaatgttgaattgttttaaacacaccctgtgatagaaa
agaaaaagaactatcattcttatgaacaaagaagatgctgctgagaagga
agggcatgatttcttacttcacacaggtcctttcatcttctcagagggaa
ttttggttttttagaagtatattgaagtcatgtgacttatcagaatccta
aacataatcttgtccgaaatttggaaaaaagcagaaagttaagttaatta
ttgcttcccattcaacaaagcatttcatctcccaaaatgaaaggaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_47554967_47556116
seq2: B6Ng01-096L01.b_43_1183 (reverse)

seq1  AATTAGTAAAATAAGAATAGTTCATGTGAT-CTTCTTGTTTCTCCAGACA  49
      ||||||| ||||||| |||| |||| |||| |||||||||| | ||||| 
seq2  AATTAGT-AAATAAG-ATAG-TCAT-TGATCCTTCTTGTTT-TTCAGAC-  44

seq1  AAGAAAATAGTGGGTGTAGAAATACAAATCCCCAGGCATATGGATGACCT  99
      ||||||||||| ||||||||||||||||| ||||||||||||||||| ||
seq2  AAGAAAATAGT-GGTGTAGAAATACAAAT-CCCAGGCATATGGATGA-CT  91

seq1  GAGAAATTTAGGAAGCTCCAAGGCTGAGAAAGTTGAAAGTCAGTTATAGC  149
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAGAAATTTAGGAAGCTCCAAGGCTGAGAAAG-TGAAAGTCAGTTATAGC  140

seq1  CACATTCTGCTTTCAGACTTTCAGAGTCAGTTGACTTCAGCCTGGTGAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTGCTTTCAGACTTTCAGAGTCAGTTGACTTCAGCCTGGTGAGC  190

seq1  ATCCATTATTAAAGTGTGAACATGGACTAGGTAGTAGTTATCAATATTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTATTAAAGTGTGAACATGGACTAGGTAGTAGTTATCAATATTGG  240

seq1  GATGGTAAGGTGTTGGAGTTTGCTGTGTGAAATTGTGTCTCTGTCCTTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTAAGGTGTTGGAGTTTGCTGTGTGAAATTGTGTCTCTGTCCTTCC  290

seq1  TCACCTTCCTAAGGCATTGGCTTTAATAAAAAGCATGATGGCCAACTAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTCCTAAGGCATTGGCTTTAATAAAAAGCATGATGGCCAACTAGC  340

seq1  TGGGCAGGAAGTGGAAGGTGAAACTTCCTAGTAGGGAAAAAAGAACTCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGGAAGTGGAAGGTGAAACTTCCTAGTAGGGAAAAAAGAACTCTG  390

seq1  GAAGAAGGAAGAGGAAGAGGAAGAAGAGGAGGAGGGAGGGGAGGACATGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGAAGAGGAAGAGGAAGAAGAGGAGGAGGGAGGGGAGGACATGG  440

seq1  ACAAGGACGAGGAGGAGGATGAGAAGGAGGAGGAAGAGGAAATCCTTTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGACGAGGAGGAGGATGAGAAGGAGGAGGAAGAGGAAATCCTTTTA  490

seq1  GCCAGGAGACGTGGAAAGAGATGGACATGATCACAGGCCTGGAAGGTAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAGACGTGGAAAGAGATGGACATGATCACAGGCCTGGAAGGTAGA  540

seq1  GGTAGCCACGTGGCTGGGTAGGGATAGGTGGTCAGGTTAACTGAGATGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCCACGTGGCTGGGTAGGGATAGGTGGTCAGGTTAACTGAGATGAG  590

seq1  CTAGTTGACAATCTGCCCAGCTAAGGCCTACGGCATTGAAATATTTTAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGACAATCTGCCCAGCTAAGGCCTACGGCATTGAAATATTTTAGG  640

seq1  GTCTCTGTGTGGTTATTTAGGGAAAATGCTGGTTAAGGAATAATTGCTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTGTGGTTATTTAGGGAAAATGCTGGTTAAGGAATAATTGCTGC  690

seq1  TGTATAAATTTCCAGCATTAATTTATATATAGGGAATATTAATAATTTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAATTTCCAGCATTAATTTATATATAGGGAATATTAATAATTTTA  740

seq1  AATATATATTTGGCACCCAATGTGGTGTGCCAATATGTAGTAGTTAAGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATTTGGCACCCAATGTGGTGTGCCAATATGTAGTAGTTAAGCC  790

seq1  TAATTATTCATTCCAGTACAATGGTCACAGAAATAGGACTCAGACTCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTCATTCCAGTACAATGGTCACAGAAATAGGACTCAGACTCAAA  840

seq1  ATATATTTACAAATACCTTGGCCATATAGATAGGCTCTACACTAAGTATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTACAAATACCTTGGCCATATAGATAGGCTCTACACTAAGTATA  890

seq1  TGATAACCTAAATAAACCAATTATTTTAACCTACATTCTGTCACATGGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACCTAAATAAACCAATTATTTTAACCTACATTCTGTCACATGGCT  940

seq1  GGTTACCTGTGCTCTGATGCCATGCATCTGTCTCCTAATATCTTCCTGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCTGTGCTCTGATGCCATGCATCTGTCTCCTAATATCTTCCTGAG  990

seq1  TGGATCTCCCACCTGGCTCTATCCCAGAATTCTTTCTCCTCCTGGATGTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTCCCACCTGGCTCTATCCCAGAATTCTTTCTCCTCCTGGATGTC  1040

seq1  CCATTCCCTATTTCCTGTCTAAGCTATATGCTTTTTAATTGACAGGTGAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCCTATTTCCTGTCTAAGCTATATGCTTTTTAATTGACAGGTGAT  1090

seq1  ATATGCATACAATACACAAAATATTCTCTCTGTAGTAAGGTATGTGAATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATACAATACACAAAATATTCTCTCTGTAGTAAGGTATGTGAATT  1140

seq1  C  1150
      |
seq2  C  1141

seq1: chr11_47389905_47390985
seq2: B6Ng01-096L01.g_67_1164

seq1  GAATTCAATGGCCTGTCTAATGTTCAAACACAGATTATGATTTGCCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGCCTGTCTAATGTTCAAACACAGATTATGATTTGCCTTTT  50

seq1  ATTATTTTGCTCCTAGAGCCTCTCTTTTATACTTCCTGTCTTCACAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTGCTCCTAGAGCCTCTCTTTTATACTTCCTGTCTTCACAAGAA  100

seq1  GGTAAGTTTGAGAATCTTTCCAGTGTGCCAAACCATGGGATCCTGGGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTTTGAGAATCTTTCCAGTGTGCCAAACCATGGGATCCTGGGAGC  150

seq1  ACTGCTAAATGGATGGTGCCCACACCATCTCAGGTTATCCTACCACCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAAATGGATGGTGCCCACACCATCTCAGGTTATCCTACCACCCTG  200

seq1  GAAAAGCCATTTTGGTTTAGGGTATGTACACACACACACACACACATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCCATTTTGGTTTAGGGTATGTACACACACACACACACACATATA  250

seq1  CACACACACACCTGTGTGCATATATATGTGTATATGTATGTGTGTATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACCTGTGTGCATATATATGTGTATATGTATGTGTGTATACA  300

seq1  TGTATATATGTGTATGTGTGATCAACTTAATAGATCCCCACAATATTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  TGTATATATGTGTATGTGTGATCAACTTAATAGATCCCCACAATGGTCAT  350

seq1  TTATCACTAAGCAGAAATTTCCTCACATCTTTGTGAACAAAGAGAGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACTAAGCAGAAATTTCCTCACATCTTTGTGAACAAAGAGAGTTTA  400

seq1  TTTTCCCTTTACCATTGTTATCTAAACAGAGAATATTTTTATATCCAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTTTACCATTGTTATCTAAACAGAGAATATTTTTATATCCAAGA  450

seq1  TCTCTAAAACTTTGCTGAATTTATGTTTTAAGTGACTGGCAAATGGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAAACTTTGCTGAATTTATGTTTTAAGTGACTGGCAAATGGAGCA  500

seq1  TAGACATTCTGAATTAAAGATCAACACACACTCAAAATAAGGAGCTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATTCTGAATTAAAGATCAACACACACTCAAAATAAGGAGCTCAGT  550

seq1  CAAAATCCCAACCCCATGTATAGACTTCTCTGGGACTTTTAGAGAAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCCCAACCCCATGTATAGACTTCTCTGGGACTTTTAGAGAAGCAA  600

seq1  TAATGAATGTTTTAGCTTTCCTTTCTGTTAGACCACTTGTGAGCAAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAATGTTTTAGCTTTCCTTTCTGTTAGACCACTTGTGAGCAAAGAC  650

seq1  ACCTGCAACCACAGACACACATCTATTGCACAGCATATTTCTGCTCATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAACCACAGACACACATCTATTGCACAGCATATTTCTGCTCATGT  700

seq1  AAGGACTCCAAAATGGAAGACTGTGTTTACACATGAGTCCTTTTCGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTCCAAAATGGAAGACTGTGTTTACACATGAGTCCTTTTCGATCA  750

seq1  TTAAATTATTAATTTGGTCTTTATAGTCATGTTAATGAGAAATGAGTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATTAATTTGGTCTTTATAGTCATGTTAATGAGAAATGAGTTCC  800

seq1  TAATTTATA-TTTAATGTTGAATTGTTTTAAACACACCCTGTGATAGAAA  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATATTTTAATGTTGAATTGTTTTAAACACACCCTGTGATAGAAA  850

seq1  AGAAAAAGAACTATACATTCTTATGAACAAAGAAGATGCTGCTGAGAATG  899
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  AGAAAAAGAACTAT-CATTCTTATGAACAAAGAAGATGCTGCTGAGAAGG  899

seq1  AA-GGCATGATTTCTTACTTCACACA-GTCC-TTCATC-TCTCAGAGGTA  945
      || ||||||||||||||||||||||| |||| |||||| ||||||||| |
seq2  AAGGGCATGATTTCTTACTTCACACAGGTCCTTTCATCTTCTCAGAGGGA  949

seq1  --TTTTGTTTTTTAGAAGTATAT--GAGTCATGTGAC-TATCAGAGTCCT  990
        ||| |||||||||||||||||   ||||||||||| ||||||| ||||
seq2  ATTTTGGTTTTTTAGAAGTATATTGAAGTCATGTGACTTATCAGAATCCT  999

seq1  -AACAT-ATCTTTGCCGACATTTGG-AAATAGCAGATAG-TAAGT--ATA  1034
       ||||| |||||  |||| |||||| ||| |||||| || |||||  || 
seq2  AAACATAATCTTGTCCGAAATTTGGAAAAAAGCAGAAAGTTAAGTTAATT  1049

seq1  TATGCTTCACCATCAACAAAGCA-TTCA-CTCACAAACTGAAAGGAAGC  1081
        |||||| |  ||||||||||| |||| ||| |||| |||||||||||
seq2  ATTGCTTCCCATTCAACAAAGCATTTCATCTCCCAAAATGAAAGGAAGC  1098