BAC Information

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BAC

Clone NameB6Ng01-097O18
Chromosome11 (Build37)11 (Build37)
Map Location 112,696,379 - 112,696,47050,311,399 - 50,312,490
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041589, LOC100043020, EG668396, EG667038, LOC100041610, LOC671963, LOC667047, BC006965, Sox9
Downstream gene2610035D17Rik, Slc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097O18.bB6Ng01-097O18.g
ACCDH908164DH908165
length1151,129
definitionDH908164|Mus musculus domesticus DNA, BAC clone: B6Ng01-097O18, 5' end.DH908165|Mus musculus domesticus DNA, BAC clone: B6Ng01-097O18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(112,696,379 - 112,696,470)(50,311,399 - 50,312,490)
sequence
gaattcagtaatattttaagatttaagatctattttattctctctctctc
tctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgt
gaattctgaactaagcttacaaattaggagataattagtagacaattagc
atatttctgactctaatcttaaaaatgtttcattttgatggccttattca
aatagaaaattctgggacccttgtgacttttttttactgggcagtggtgg
agagaggaaacctttggccagtagcctgttaccacccagcttctgccgtg
cagggctcccacaccaatgtgattaactgcttccttcacagtctccaagt
caactaagggtgtggtggaccccacaggatagaagaaacctgctctgggt
actggaaacgagcttgaggctgattaggtctggatacccagatcatggtt
caacagggaatagggagctggctctgggtgggcaccacttgatgaccttg
ctgatgtcttattccatgaagaagggcattccacaagatgctcacgatgg
aggcacagggagactgcttctccggtagggcatggtgtggtttagattgc
aacttcttcccaagcactgcttattaaatgtttggtccacagggtggcac
aatgggaggtggtggaaccttttgggagtgcgtgccttcaaggcactgtg
ggaccccccctgacctttcttctattttctggctgtgatgtgttactttt
agtatagtctctaaagctttgaaagccactttgatcctggacttgggtct
tcaaaactgtgagctatgatgacgttgttctctttgcacgttatctcaga
cattttgttcataataatacaaaactgacagacaaaggggtgaaggtcct
gttctgtaactaccattcataggtattgacaagaggtcagaaagacttcc
cggtttgttaatttgtgcttatttatccaaccagcccaggcccttttgtg
aattgttgctgtcacccctctttctgggttctctatggtctcaagggtag
gactattgatagaaagtgttcccataagcctatcttgggaggtttctcat
gcatcagaggaggctgtaaactatatggatggttgtagagtacccttaaa
atctttaactgtggtggaattatctgaactggaaaaaggtggcggtattt
tcctttgtgattcttgctttttttttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_112696379_112696470
seq2: B6Ng01-097O18.b_74_157 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACAGAGAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACAGAGAGAGAGAGAG  50

seq1  AGAGAGAGAAAGAGAGAGAGAGAGAGAGAGATTAAATAAAAT  92
      ||||||||| ||||||||||||||||        ||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAG--------AATAAAAT  84

seq1: chr11_50311399_50312490
seq2: B6Ng01-097O18.g_70_1198

seq1  GAATTCTGAACTAAGCTTACAAATTAGGAGATAATTAGTAGACAATTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAACTAAGCTTACAAATTAGGAGATAATTAGTAGACAATTAGC  50

seq1  ATATTTCTGACTCTAATCTTAAAAATGTTTCATTTTGATGGCCTTATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTGACTCTAATCTTAAAAATGTTTCATTTTGATGGCCTTATTCA  100

seq1  AATAGAAAATTCTGGGACCCTTGTGACTTTTTTTTACTGGGCAGTGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAATTCTGGGACCCTTGTGACTTTTTTTTACTGGGCAGTGGTGG  150

seq1  AGAGAGGAAACCTTTGGCCAGTAGCCTGTTACCACCCAGCTTCTGCCGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAAACCTTTGGCCAGTAGCCTGTTACCACCCAGCTTCTGCCGTG  200

seq1  CAGGGCTCCCACACCAATGTGATTAACTGCTTCCTTCACAGTCTCCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTCCCACACCAATGTGATTAACTGCTTCCTTCACAGTCTCCAAGT  250

seq1  CAACTAAGGGTGTGGTGGACCCCACAGGATAGAAGAAACCTGCTCTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAAGGGTGTGGTGGACCCCACAGGATAGAAGAAACCTGCTCTGGGT  300

seq1  ACTGGAAACGAGCTTGAGGCTGATTAGGTCTGGATACCCAGATCATGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAACGAGCTTGAGGCTGATTAGGTCTGGATACCCAGATCATGGTT  350

seq1  CAACAGGGAATAGGGAGCTGGCTCTGGGTGGGCACCACTTGATGACCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGGAATAGGGAGCTGGCTCTGGGTGGGCACCACTTGATGACCTTG  400

seq1  CTGATGTCTTATTCCATGAAGAAGGGCATTCCACAAGATGCTCACGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTCTTATTCCATGAAGAAGGGCATTCCACAAGATGCTCACGATGG  450

seq1  AGGCACAGGGAGACTGCTTCTCCGGTAGGGCATGGTGTGGTTTAGATTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGGGAGACTGCTTCTCCGGTAGGGCATGGTGTGGTTTAGATTGC  500

seq1  AACTTCTTCCCAAGCACTGCTTATTAAATGTTTGGTCCACAGGGTGGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTCCCAAGCACTGCTTATTAAATGTTTGGTCCACAGGGTGGCAC  550

seq1  AATGGGAGGTGGTGGAACCTTTTGGGAGTGCGTGCCTTCAAGGCACTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAGGTGGTGGAACCTTTTGGGAGTGCGTGCCTTCAAGGCACTGTG  600

seq1  GGACCCCCCCTGACCTTTCTTCTATTTTCTGGCTGTGATGTGTTAC-TTT  649
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGACCCCCCCTGACCTTTCTTCTATTTTCTGGCTGTGATGTGTTACTTTT  650

seq1  AGTATAGTCTCTAAAGCTTTG-AAGCCAC-TTGATCCTGGACTTGGGTCT  697
      ||||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  AGTATAGTCTCTAAAGCTTTGAAAGCCACTTTGATCCTGGACTTGGGTCT  700

seq1  TCAAAACTGTGAGCTATGATGACGTTGTTCTCTTTGCACGTTATCTCAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTGTGAGCTATGATGACGTTGTTCTCTTTGCACGTTATCTCAGA  750

seq1  CATTTTG-TCATAATAATACAAAACTGACAGAC-AAGGGGTGAAGGTCCT  795
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  CATTTTGTTCATAATAATACAAAACTGACAGACAAAGGGGTGAAGGTCCT  800

seq1  GTTCTGTAACTACCA-TCATA-GTATTGAC-AGAGGTCAGAAAGACT--C  840
      ||||||||||||||| ||||| |||||||| ||||||||||||||||  |
seq2  GTTCTGTAACTACCATTCATAGGTATTGACAAGAGGTCAGAAAGACTTCC  850

seq1  CCGTTTGT--AATTGTGCTTA-TTATCC-ACCAG-CCAGGCCC-TTTGTG  884
      | ||||||  | ||||||||| |||||| ||||| |||||||| ||||||
seq2  CGGTTTGTTAATTTGTGCTTATTTATCCAACCAGCCCAGGCCCTTTTGTG  900

seq1  ACT--GTGCTGTCACCCCTC-TTCTGG--TCTCTATGGTCTCAAGGGTAG  929
      | |   |||||||||||||| ||||||  |||||||||||||||||||||
seq2  AATTGTTGCTGTCACCCCTCTTTCTGGGTTCTCTATGGTCTCAAGGGTAG  950

seq1  GACAATTGATAG-AAGTGTCCCCA-AAGCCTATCT--GGAGG-TTCTCAT  974
      ||| |||||||| |||||| |||| ||||||||||  ||||| |||||||
seq2  GACTATTGATAGAAAGTGTTCCCATAAGCCTATCTTGGGAGGTTTCTCAT  1000

seq1  GCATTCAGA-GAGCCTG-AAACTA-ATGAATGGTTGTAGAG-ACCCTTAA  1020
      ||| ||||| ||| ||| |||||| ||| |||||||||||| ||||||||
seq2  GCA-TCAGAGGAGGCTGTAAACTATATGGATGGTTGTAGAGTACCCTTAA  1049

seq1  AACCTTTATACTGT-GTGGATTTAACTG-ACTGG-AAAAGGTG--GGGAT  1065
      || ||||| ||||| ||||| ||| ||| ||||| ||||||||  || ||
seq2  AATCTTTA-ACTGTGGTGGAATTATCTGAACTGGAAAAAGGTGGCGGTAT  1098

seq1  TTTCTTTTGT--TTTTT--TTTTTTTTTTTG  1092
      |||| |||||  || ||  ||||||||||||
seq2  TTTCCTTTGTGATTCTTGCTTTTTTTTTTTG  1129