BAC Information

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BAC

Clone NameB6Ng01-099C24
Chromosome11 (Build37)
Map Location 70,349,568 - 70,506,990
singlet/doubletdoublet
Overlap genePld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396
Upstream geneDnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6
Downstream geneKif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099C24.bB6Ng01-099C24.g
ACCDH909051DH909052
length1,158651
definitionDH909051|Mus musculus domesticus DNA, BAC clone: B6Ng01-099C24, 5' end.DH909052|Mus musculus domesticus DNA, BAC clone: B6Ng01-099C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,349,568 - 70,350,738)(70,506,340 - 70,506,990)
sequence
gaattccatggtggtttttgctatattcacacggttatataaccatcacc
actaattttagattttccattaccctcaagaaacccttgtactcattaga
aatcattcctcaaccctccttctcccgagccctgacaggcactaatctac
ttcctgtctctctgtggactttctttatcctgagcagtccatagtgtgct
ggttagtctttcttgttttttgtttttgttttctttctttctttagatta
atctatattgataagatacttatttgctatattttgaagcaacatctaag
acaaaatacaggaaaagccggtccgtcccttctaccttttctctgcccaa
ccctcccacccccaaatacttctccttgtgatttgctcagatcagggctt
agagcagtgatggataatttgattgccaacttgattagattaagaaccac
cctgagtggggctgaagagatggttcggcagttggaagcacttactgttt
ctacagaaggcctaggttcagtttctagcactcagagcagttctcaatcc
cctgtacttccaattccagagcaactgaggccctcttctgacccacctcc
ttgggttcctgcatgcacatggtgtatatacatacattcataacatacac
acatacaggtaaaatgaaaaaaaaaaaaaaacacttacctgagcttgctg
tggtggcatgcaactttaatcccgacactcaggagacaatggctggtgga
tctctgaattccaggccggcttgatttacagagcaagctgtaggccagcc
tctaaacaacaacaacaacaacaacaactacaacaacaacacaacaaccc
ctaaaggcatgaataagcatactttgggcaatcctgtgagaatgttttca
gagaggaggtttgtttgcttgtttgttttaaagctaggacctcacttttg
tagcccaggctggcctcaaactcctaatgatctccagtggtctaagctga
gaatacagtgtaactcccaacttctgctgtccaggactctgatctgagaa
gaaaagacctgagctgatgtgatgtatcatcccatgcactgaagtctgcg
gtgagaaaagggaacatggtaaaccatcttagtcatactcactctgttct
ctgtctcc
gaattcactctgtagatcaggctggcctcgaactcagaaatccacctgcc
tctgctccccaagtgctgggattaaaggcgtgtgccaccacgcccagcaa
aaaatacattcttaaaaataaaaatatggggcgttgtgaaatgtctcagt
gattaagaacactggctgcttttccagagactcagattcagtttccagca
cacacaaaacatctataacttcagttccagagggtctgatacactcttct
gggttctgtgggcccgctgtgcatgtgatacacagacacatatgcaggca
agacacattatatggaataaaaatgaattaaattttcaagaaattttttt
agaagaatagaagcaggggagagagagagagagagaaagagagagagaga
gagagagagagagagagagagagagagagagagaaagagagagagagaga
atgaattgctattgctatagtccaggaagaaaaagatgatagatgatctg
catatgatgaggaggaaaatggaaacactggtgacgtttgagtattatcc
agttttacagctcacagggttagccaatggactagatacaggaagtcagg
gaaaatagaacatatcaggattttggccacagctactaggcatgtaaggt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_70349568_70350738
seq2: B6Ng01-099C24.b_44_1201

seq1  GAATTCCATGGTGGTTTTTGCTATATTCACACGGTTATATAACCATCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGTGGTTTTTGCTATATTCACACGGTTATATAACCATCACC  50

seq1  ACTAATTTTAGATTTTCCATTACCCTCAAGAAACCCTTGTACTCATTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTTTAGATTTTCCATTACCCTCAAGAAACCCTTGTACTCATTAGA  100

seq1  AATCATTCCTCAACCCTCCTTCTCCCGAGCCCTGACAGGCACTAATCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTCCTCAACCCTCCTTCTCCCGAGCCCTGACAGGCACTAATCTAC  150

seq1  TTCCTGTCTCTCTGTGGACTTTCTTTATCCTGAGCAGTCCATAGTGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCTCTCTGTGGACTTTCTTTATCCTGAGCAGTCCATAGTGTGCT  200

seq1  GGTTAGTCTTTCTTGTTTTTTGTTTTTGTTTTCTTTCTTTCTTTAGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTCTTTCTTGTTTTTTGTTTTTGTTTTCTTTCTTTCTTTAGATTA  250

seq1  ATCTATATTGATAAGATACTTATTTGCTATATTTTGAAGCAACATCTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATTGATAAGATACTTATTTGCTATATTTTGAAGCAACATCTAAG  300

seq1  ACAAAATACAGGAAAAGCCGGTCCGTCCCTTCTACCTTTTCTCTGCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATACAGGAAAAGCCGGTCCGTCCCTTCTACCTTTTCTCTGCCCAA  350

seq1  CCCTCCCACCCCCAAATACTTCTCCTTGTGATTTGCTCAGATCAGGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCACCCCCAAATACTTCTCCTTGTGATTTGCTCAGATCAGGGCTT  400

seq1  AGAGCAGTGATGGATAATTTGATTGCCAACTTGATTAGATTAAGAACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTGATGGATAATTTGATTGCCAACTTGATTAGATTAAGAACCAC  450

seq1  CCTGAGTGGGGCTGAAGAGATGGTTCGGCAGTTGGAAGCACTTACTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTGGGGCTGAAGAGATGGTTCGGCAGTTGGAAGCACTTACTGTTT  500

seq1  CTACAGAAGGCCTAGGTTCAGTTTCTAGCACTCAGAGCAGTTCTCAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAAGGCCTAGGTTCAGTTTCTAGCACTCAGAGCAGTTCTCAATCC  550

seq1  CCTGTACTTCCAATTCCAGAGCAACTGAGGCCCTCTTCTGACCCACCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACTTCCAATTCCAGAGCAACTGAGGCCCTCTTCTGACCCACCTCC  600

seq1  TTGGGTTCCTGCATGCACATGGTGTATATACATACATTCATAACATACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTCCTGCATGCACATGGTGTATATACATACATTCATAACATACAC  650

seq1  ACATACAGGTAAAATGAAAAAAAAAAAAAAACACTTACCTGAGCTTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAGGTAAAATGAAAAAAAAAAAAAAACACTTACCTGAGCTTGCTG  700

seq1  TGGTGGCATGCAACTTTAATCCCGACACTCAGGAGACAATGGCTGGTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCATGCAACTTTAATCCCGACACTCAGGAGACAATGGCTGGTGGA  750

seq1  TCTCTGAATTCCAGGCCGGCTTGATTTACAGAGCAAGCTGTAGGCCAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAATTCCAGGCCGGCTTGATTTACAGAGCAAGCTGTAGGCCAGCC  800

seq1  TCTAAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA  850
      |||||||||||||||||||||||||||| ||||||||||| |||||||| 
seq2  TCTAAACAACAACAACAACAACAACAACTACAACAACAAC-ACAACAACC  849

seq1  CCT-AAGGCATGAATAAGCATACTTTGGGCAATCCTGTGAGAATGTTTTC  899
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGGCATGAATAAGCATACTTTGGGCAATCCTGTGAGAATGTTTTC  899

seq1  AGAGAGGAGGTTTGTTTGCTTGTTTGTTTTAAAGCTAGGACCTCAC-TTT  948
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGAGAGGAGGTTTGTTTGCTTGTTTGTTTTAAAGCTAGGACCTCACTTTT  949

seq1  GTAGCCCAGGCTGGCCTCAAACTCCTAATGATCTCCAGTGGTCTAAGCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCAGGCTGGCCTCAAACTCCTAATGATCTCCAGTGGTCTAAGCTG  999

seq1  AGAATACAAGTGTAACTCCCAAC-TCTGCTGTCCAGGGACACGGATCTGA  1047
      ||||||| ||||||||||||||| ||||||||||| |||| | |||||| 
seq2  AGAATAC-AGTGTAACTCCCAACTTCTGCTGTCCA-GGACTCTGATCTG-  1046

seq1  AGAAG-AAAGACCTGAGCTGAATGTGGATGGTATCATCCCATGCACTGGA  1096
      ||||| |||||||||||||| |||| ||| |||||||||||||||||| |
seq2  AGAAGAAAAGACCTGAGCTG-ATGT-GAT-GTATCATCCCATGCACTGAA  1093

seq1  GTCCTGCGGTGAGGAAAAGGGGAACCATGGGAAACCATCTTAGTACCAAT  1146
      || ||||||||| ||||||||  | ||||| |||||||||||||    ||
seq2  GT-CTGCGGTGA-GAAAAGGG--AACATGGTAAACCATCTTAGT---CAT  1136

seq1  ACTCACCTTTCTGTTCTCTGTCTCC  1171
      ||||||   ||||||||||||||||
seq2  ACTCAC---TCTGTTCTCTGTCTCC  1158

seq1: chr11_70506340_70506990
seq2: B6Ng01-099C24.g_67_717 (reverse)

seq1  CACCTTACATGCCTAGTAGCTGTGGCCAAAATCCTGCTATGTTCTATTTT  50
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CACCTTACATGCCTAGTAGCTGTGGCCAAAATCCTGATATGTTCTATTTT  50

seq1  CCCTGACTTCCTGTATCTAGTCCATTGGCTAACCCTGTGAGCTGTAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACTTCCTGTATCTAGTCCATTGGCTAACCCTGTGAGCTGTAAAAC  100

seq1  TGGATAATACTCAAACGTCACCAGTGTTTCCATTTTCCTCCTCATCATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAATACTCAAACGTCACCAGTGTTTCCATTTTCCTCCTCATCATAT  150

seq1  GCAGATCATCTATCATCTTTTTCTTCCTGGACTATAGCAATAGCAATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCATCTATCATCTTTTTCTTCCTGGACTATAGCAATAGCAATTCA  200

seq1  TTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  250

seq1  CTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCCCCTGCTTCTATTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCCCCTGCTTCTATTCTTC  300

seq1  TAAAAAAATTTCTTGAAAATTTAATTCATTTTTATTCCATATAATGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATTTCTTGAAAATTTAATTCATTTTTATTCCATATAATGTGTC  350

seq1  TTGCCTGCATATGTGTCTGTGTATCACATGCACAGCGGGCCCACAGAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGCATATGTGTCTGTGTATCACATGCACAGCGGGCCCACAGAACC  400

seq1  CAGAAGAGTGTATCAGACCCTCTGGAACTGAAGTTATAGATGTTTTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGTGTATCAGACCCTCTGGAACTGAAGTTATAGATGTTTTGTGT  450

seq1  GTGCTGGAAACTGAATCTGAGTCTCTGGAAAAGCAGCCAGTGTTCTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGAAACTGAATCTGAGTCTCTGGAAAAGCAGCCAGTGTTCTTAAT  500

seq1  CACTGAGACATTTCACAACGCCCCATATTTTTATTTTTAAGAATGTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGACATTTCACAACGCCCCATATTTTTATTTTTAAGAATGTATTT  550

seq1  TTTGCTGGGCGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGGAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGGGCGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGGAGCAG  600

seq1  AGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGATCTACAGAGTGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGATCTACAGAGTGAATT  650

seq1  C  651
      |
seq2  C  651