BAC Information

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BAC

Clone NameB6Ng01-100H12
Chromosome11 (Build37)
Map Location 120,103,728 - 120,197,617
singlet/doubletdoublet
Overlap geneBahcc1
Upstream geneCcdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389
Downstream geneActg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100H12.bB6Ng01-100H12.g
ACCDH909960DH909961
length3511,136
definitionDH909960|Mus musculus domesticus DNA, BAC clone: B6Ng01-100H12, 5' end.DH909961|Mus musculus domesticus DNA, BAC clone: B6Ng01-100H12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,197,267 - 120,197,617)(120,103,728 - 120,104,871)
sequence
cagtaattttcagcttctgaggttatgtccccttcagtgaggtcagccct
ccctttcagcagggagctgagtgcatttcctgatgcagccagattctcct
gttactgtctgaattccatcctgggatcccatcacttctaacaatgcatg
ctctctctgtatgtctgtctcccctcccccttccctccccttctccccct
ccatgtctctctctctctctctctctctctctctctctctctctctctct
ctgtgtgtgtgtgtttgaggtagggttttattacacagcccaggctggtc
ttaaacatgtgattgtcagtttttgcccaattgctgggatttcaggtgtg
t
gaattcccaagcacagatgataaagttcaagcacagcctctgggaatcag
ggctttccgggcagcggaagggagccatggtggtcaccccagtgcctctt
tgcccttcttcctctgaggccccaggagtactgcctgtcttccttttacc
acaaacatctggctataagtccccacaatggtatattctgccctattccc
tggatcctgtgcagaggccttgattgcggagagcaaagtcccaagagagt
tcttcactaacccttcacccctcccccagctcagcctgtacccgaatccc
ccttcagaatcacattggaggggcctagtggccctgtcctcagcctggca
cagcaggggaggtctttgcctatggagtccttgaggaaatgccttcctga
gttattgaccaatatgactctggagatttcccaaaagaatcccaggacac
agctgcgcctcaggccctttggcaggcaggtcccagagctcctttgtcca
gaggttctgaagtcccagatcctgcgggggaggtggcctgcccaggaggc
ctccaggttgggtgtgtgtagctcctcagtttcagacaagtggtgaacta
gcttcagaattccaagcacgtgccttgtctctttggcaaattaggtgact
tactctgtcccatgtccaacccctttgcctgccagggaacgtctcccctg
gggttcctggcccccattaacctctgggacctcatttctcctccccaata
gacatggtgtaacaagcaaaaaacagaatcacaagcaccgtgcaaggcct
agaaaatcacctcacagccctgccgtgccgggaaggagcagggcctcgaa
gggcctccggcatggggacggcactccgctttggcttccgacgctctgcc
cgctgacgtttttatgggattaaataccgtttagatcacgcaggcctatt
ggtcagtgggctgcccctgtttgtcgtaatatataatacactgcctctgt
gccctggtggcagctgccactgcaggcgtgggggcgtggcctagggaggt
gtcgttggttgcttaataaggggacctcttgcctggtctgacagctttgg
ttccagatgaactccaccttgatggggaggtgacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_120197267_120197617
seq2: B6Ng01-100H12.b_48_398 (reverse)

seq1  ACACACCTGTAATCCCAGCACTTGGGCAAAAACCGACAATCACATGTTTA  50
      ||||||||| |||||||||| |||||||||||| ||||||||||||||||
seq2  ACACACCTGAAATCCCAGCAATTGGGCAAAAACTGACAATCACATGTTTA  50

seq1  AGACCAGCCTGGGCTGTGTAATAAAACCCTACCTCAAACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGCCTGGGCTGTGTAATAAAACCCTACCTCAAACACACACACACA  100

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACATG  150

seq1  GAGGGGGAGAAGGGGAGGGAAGGGGGAGGGGAGACAGACATACAGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGAGAAGGGGAGGGAAGGGGGAGGGGAGACAGACATACAGAGAGA  200

seq1  GCATGCATTGTTAGAAGTGATGGGATCCCAGGATGGAATTCAGACAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATTGTTAGAAGTGATGGGATCCCAGGATGGAATTCAGACAGTAA  250

seq1  CAGGAGAATCTGGCTGCATCAGGAAATGCACTCAGCTCCCTGCTGAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAATCTGGCTGCATCAGGAAATGCACTCAGCTCCCTGCTGAAAGG  300

seq1  GAGGGCTGACCTCACTGAAGGGGACATAACCTCAGAAGCTGAAAATTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTGACCTCACTGAAGGGGACATAACCTCAGAAGCTGAAAATTACT  350

seq1  G  351
      |
seq2  G  351

seq1: chr11_120103728_120104871
seq2: B6Ng01-100H12.g_68_1203

seq1  GAATTCCCAAGCACAGATGATAAAGTTCAAGCACAGCCTCTGGGAATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGCACAGATGATAAAGTTCAAGCACAGCCTCTGGGAATCAG  50

seq1  GGCTTTCCGGGCAGCGGAAGGGAGCCATGGTGGTCACCCCAGTGCCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCCGGGCAGCGGAAGGGAGCCATGGTGGTCACCCCAGTGCCTCTT  100

seq1  TGCCCTTCTTCCTCTGAGGCCCCAGGAGTACTGCCTGTCTTCCTTTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTCTTCCTCTGAGGCCCCAGGAGTACTGCCTGTCTTCCTTTTACC  150

seq1  ACAAACATCTGGCTATAAGTCCCCACAATGGTATATTCTGCCCTATTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATCTGGCTATAAGTCCCCACAATGGTATATTCTGCCCTATTCCC  200

seq1  TGGATCCTGTGCAGAGGCCTTGATTGCGGAGAGCAAAGTCCCAAGAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCTGTGCAGAGGCCTTGATTGCGGAGAGCAAAGTCCCAAGAGAGT  250

seq1  TCTTCACTAACCCTTCACCCCTCCCCCAGCTCAGCCTGTACCCGAATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTAACCCTTCACCCCTCCCCCAGCTCAGCCTGTACCCGAATCCC  300

seq1  CCTTCAGAATCACATTGGAGGGGCCTAGTGGCCCTGTCCTCAGCCTGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGAATCACATTGGAGGGGCCTAGTGGCCCTGTCCTCAGCCTGGCA  350

seq1  CAGCAGGGGAGGTCTTTGCCTATGGAGTCCTTGAGGAAATGCCTTCCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGGGAGGTCTTTGCCTATGGAGTCCTTGAGGAAATGCCTTCCTGA  400

seq1  GTTATTGACCAATATGACTCTGGAGATTTCCCAAAAGAATCCCAGGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGACCAATATGACTCTGGAGATTTCCCAAAAGAATCCCAGGACAC  450

seq1  AGCTGCGCCTCAGGCCCTTTGGCAGGCAGGTCCCAGAGCTCCTTTGTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCGCCTCAGGCCCTTTGGCAGGCAGGTCCCAGAGCTCCTTTGTCCA  500

seq1  GAGGTTCTGAAGTCCCAGATCCTGCGGGGGAGGTGGCCTGCCCAGGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCTGAAGTCCCAGATCCTGCGGGGGAGGTGGCCTGCCCAGGAGGC  550

seq1  CTCCAGGTTGGGTGTGTGTAGCTCCTCAGTTTCAGACAAGTGGTGAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGTTGGGTGTGTGTAGCTCCTCAGTTTCAGACAAGTGGTGAACTA  600

seq1  GCTTCAGAATTCCAAGCACGTGCCTTGTCTCTTTGGCAAATTAGGTGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGAATTCCAAGCACGTGCCTTGTCTCTTTGGCAAATTAGGTGACT  650

seq1  TACTCTGTCCCATGTCCAACCCCTTTGCCTGCCAGGGAACGTCTCCCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTCCCATGTCCAACCCCTTTGCCTGCCAGGGAACGTCTCCCCTG  700

seq1  GGGTTCCTGGCCCCCATTAACCTCTGGGACCTCA-TTCTCCTCCCCAATA  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGGTTCCTGGCCCCCATTAACCTCTGGGACCTCATTTCTCCTCCCCAATA  750

seq1  GACATGGTGTAACAAGCAAAAAACAGAATCACAAGCACCGTGCAAGGCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGTGTAACAAGCAAAAAACAGAATCACAAGCACCGTGCAAGGCCT  800

seq1  AGAAAATCACCTCACAGCCCTGCCGTGCCGGGAAGGAGCAGGGCCTCGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCACCTCACAGCCCTGCCGTGCCGGGAAGGAGCAGGGCCTCGAA  850

seq1  GGGCCTCCGGCAT-GGGACGGCACTCCGCTTTGGC-TCCGACGCTCTGCC  897
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  GGGCCTCCGGCATGGGGACGGCACTCCGCTTTGGCTTCCGACGCTCTGCC  900

seq1  CGCTGACGTTTTTATGGGATAATATACCGTTTAGATCACGCAGGCCTATT  947
      |||||||||||||||||||| | |||||||||||||||||||||||||||
seq2  CGCTGACGTTTTTATGGGATTAAATACCGTTTAGATCACGCAGGCCTATT  950

seq1  TGTCAGTGGGCTGCCCCTGTTTGTCGTAATATATAATACCACTGCCTCCT  997
       ||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  GGTCAGTGGGCTGCCCCTGTTTGTCGTAATATATAATA-CACTGCCT-CT  998

seq1  GTGGCCCTGTGAGCAGCTGCCACTGCAGGCGT-GGGGCGTGGGCTCAGGG  1046
      || ||||||   |||||||||||||||||||| ||||||||| ||   ||
seq2  GT-GCCCTGGTGGCAGCTGCCACTGCAGGCGTGGGGGCGTGGCCT--AGG  1045

seq1  GAGGTGTCGGTGGGTGCTGAATAGGGGGACGCCCTTGCCCTGGTTCTGGA  1096
      ||||||||| ||| |||| |||| |||||| | |||| ||||| ||||  
seq2  GAGGTGTCGTTGGTTGCTTAATAAGGGGAC-CTCTTG-CCTGG-TCTG--  1090

seq1  CCAGCTCTGGGTTCACAGTGGACCTCACGCCTGATGGGGAGGTGTCCA  1144
       ||||| | ||||| |||  || |||   | ||||||||||||| |||
seq2  ACAGCT-TTGGTTC-CAGATGAACTCCACCTTGATGGGGAGGTGACCA  1136