BAC Information

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BAC

Clone NameB6Ng01-102K08
Chromosome11 (Build37)
Map Location 114,034,940 - 114,069,891
singlet/doubletdoublet
Overlap genenone
Upstream gene2610035D17Rik, Slc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739
Downstream geneLOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102K08.bB6Ng01-102K08.g
ACCDH911476DH911477
length1,112567
definitionDH911476|Mus musculus domesticus DNA, BAC clone: B6Ng01-102K08, 5' end.DH911477|Mus musculus domesticus DNA, BAC clone: B6Ng01-102K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,068,763 - 114,069,891)(114,034,940 - 114,035,512)
sequence
gaattcaggtgcaatggcatgcatttataacctagcactgaggtggagac
aggagagtccctgggggctcactggccagatagactagctgaatcagaga
gcttcaggttcagggagagtgagaacaaactagtggtttaggaagacaga
agaggtcaacctctagcctccacatgcatgcacatgcacacccgtgtaca
cacacacacacacacacacacactcccaccaccaccaccaccaccaccat
gccattattttgcttttctttgactggcttccagatatttcttgaccaac
ccacagccatctttggtagacaaaagggtatattcttctacaaacagaca
gacagagagacaggccaagggaatctatctggagaacagagctaatattt
caaccttattttcatccctaacttatttagtgtgaaccaaaaggccaggc
tactgtgtctagggcacctttcaggaaagggaccaagagacaggaagacc
aacgcaaggtgatgcagcgggaggcagtacagcaaaggtcactttaccct
caaaggcctcatctttgaggacacgtcatggaggtattgatttgccttag
ctgcaccctctgtaaattcatgaggttgcgactttgatattctcgagaat
gttccagatctacatttattgaccagggggaaagccactacttagccaag
aagcatatacattaatggaggtcagggaagagaagaggatggagagatgg
acaaccaagctatgccgtagtcacaaaggtatagtatacagccctttaga
agatacgggtagggcctgggggatggatatgtgggtcaaaacatttttct
gccaagcctggcagctggagtttgatccttgggacccacagggcagaaag
ataaaatcaactctacaagttacagttgtcctctgatctctacactccat
agaacattcctctgcctctgccagctacaagtgtgtgtgtgtgtgagttt
ttaatatgctctgtttggtgtagtttatttttctcattaaatccctttta
aagaaaatcctaagatggtctcataaattcagtatacgaaaatatcgatt
catattatgtac
ttactcttactgcatcccctgacttccacagttaatcagggagtcatggg
aattggagacctccagcccctagagcctcccaaagcctcttatagggagg
gttcctaatcaccctgtgggctccagatttttttctgcccctcctttcat
ctccccttagtgtgattttttttccctccttggccatcagtctgcttaat
acaggagacttgtctcagtgattcaacaagtgcctgtatcctctatctgg
aggggtgacagcaaccagagagcaaccttctagaatcatttctcagcctg
acctaagacctgggttgggagctgcttcttcctggctgcgggagaggtgg
tatctgaactcatcattagccgacctgaccagcccaggaagactctaagg
agtgtgtggtagaaaggagatataccagaggggaatggttgggaagccct
ttatcatactaaaggatgattcaatgaaaaataagaggacacagcaccca
ctttcttaagccccaaagctattcatcctcagggtaggcaggatgggagg
atgggagttggggtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_114068763_114069891
seq2: B6Ng01-102K08.b_46_1157 (reverse)

seq1  GTACATAAATTATGAATCGATATTTCTGTATAATTGGAATTTATTGGAGA  50
      ||||||||  |||||||||||||||  ||||| |  ||||||||  ||||
seq2  GTACATAA--TATGAATCGATATTTTCGTATACT--GAATTTAT--GAGA  44

seq1  CCATCTTAGGATTTTCTTTTAAAAGGGATTTAAATGAAGAAAAATAAAAA  100
      |||||||||||||||| |||||||||||||| |||| ||||||||  |||
seq2  CCATCTTAGGATTTTC-TTTAAAAGGGATTT-AATG-AGAAAAAT--AAA  89

seq1  CTACACCAAAACAAGAGCATATTAAAAAACCTCACACACACACACACTTG  150
      ||||||||||   |||||||||||||||  ||||||||||||||||||||
seq2  CTACACCAAA--CAGAGCATATTAAAAA--CTCACACACACACACACTTG  135

seq1  TAGCTGGCAGAGGCAGAGGAATGTTCTATGGAGTTGTAGAGATCAGAGGA  200
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAGCTGGCAGAGGCAGAGGAATGTTCTATGGAG-TGTAGAGATCAGAGGA  184

seq1  CAACCTGTAACTTGTAGAGTTGATTTTATCCTTCTGCCCTGTGGGTCCCA  250
      ||| |||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAA-CTGTAACTTGTAGAGTTGATTTTATCTTTCTGCCCTGTGGGTCCCA  233

seq1  AGGATCAAACTCCAGCTGCCAGGCTTGGCAGAAAAATGTTTTGACCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAAACTCCAGCTGCCAGGCTTGGCAGAAAAATGTTTTGACCCACA  283

seq1  TATCCATCCCCCAGGCCCTACCCGTATCTTCTAAAGGGCTGTATACTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATCCCCCAGGCCCTACCCGTATCTTCTAAAGGGCTGTATACTATA  333

seq1  CCTTTGTGACTACGGCATAGCTTGGTTGTCCATCTCTCCATCCTCTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGACTACGGCATAGCTTGGTTGTCCATCTCTCCATCCTCTTCTC  383

seq1  TTCCCTGACCTCCATTAATGTATATGCTTCTTGGCTAAGTAGTGGCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGACCTCCATTAATGTATATGCTTCTTGGCTAAGTAGTGGCTTTC  433

seq1  CCCCTGGTCAATAAATGTAGATCTGGAACATTCTCGAGAATATCAAAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGTCAATAAATGTAGATCTGGAACATTCTCGAGAATATCAAAGTC  483

seq1  GCAACCTCATGAATTTACAGAGGGTGCAGCTAAGGCAAATCAATACCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTCATGAATTTACAGAGGGTGCAGCTAAGGCAAATCAATACCTCC  533

seq1  ATGACGTGTCCTCAAAGATGAGGCCTTTGAGGGTAAAGTGACCTTTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGTGTCCTCAAAGATGAGGCCTTTGAGGGTAAAGTGACCTTTGCTG  583

seq1  TACTGCCTCCCGCTGCATCACCTTGCGTTGGTCTTCCTGTCTCTTGGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCTCCCGCTGCATCACCTTGCGTTGGTCTTCCTGTCTCTTGGTCC  633

seq1  CTTTCCTGAAAGGTGCCCTAGACACAGTAGCCTGGCCTTTTGGTTCACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGAAAGGTGCCCTAGACACAGTAGCCTGGCCTTTTGGTTCACAC  683

seq1  TAAATAAGTTAGGGATGAAAATAAGGTTGAAATATTAGCTCTGTTCTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGTTAGGGATGAAAATAAGGTTGAAATATTAGCTCTGTTCTCCA  733

seq1  GATAGATTCCCTTGGCCTGTCTCTCTGTCTGTCTGTTTGTAGAAGAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATTCCCTTGGCCTGTCTCTCTGTCTGTCTGTTTGTAGAAGAATAT  783

seq1  ACCCTTTTGTCTACCAAAGATGGCTGTGGGTTGGTCAAGAAATATCTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTTGTCTACCAAAGATGGCTGTGGGTTGGTCAAGAAATATCTGGA  833

seq1  AGCCAGTCAAAGAAAAGCAAAATAATGGCATGGTGGTGGTGGTGGTGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTCAAAGAAAAGCAAAATAATGGCATGGTGGTGGTGGTGGTGGTG  883

seq1  GTGGGAGTGTGTGTGTGTGTGTGTGTGTGTGTACACGGGTGTGCATGTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGTGTGTGTGTGTGTGTGTGTGTGTGTACACGGGTGTGCATGTGC  933

seq1  ATGCATGTGGAGGCTAGAGGTTGACCTCTTCTGTCTTCCTAAACCACTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTGGAGGCTAGAGGTTGACCTCTTCTGTCTTCCTAAACCACTAG  983

seq1  TTTGTTCTCACTCTCCCTGAACCTGAAGCTCTCTGATTCAGCTAGTCTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTCACTCTCCCTGAACCTGAAGCTCTCTGATTCAGCTAGTCTAT  1033

seq1  CTGGCCAGTGAGCCCCCAGGGACTCTCCTGTCTCCACCTCAGTGCTAGGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAGTGAGCCCCCAGGGACTCTCCTGTCTCCACCTCAGTGCTAGGT  1083

seq1  TATAAATGCATGCCATTGCACCTGAATTC  1129
      |||||||||||||||||||||||||||||
seq2  TATAAATGCATGCCATTGCACCTGAATTC  1112

seq1: chr11_114034940_114035512
seq2: B6Ng01-102K08.g_68_640

seq1  GAATTCTTACTCTTACTGCATCCCCTGACTTCCACAGTTAATCAGGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTCTTACTGCATCCCCTGACTTCCACAGTTAATCAGGGAGT  50

seq1  CATGGGAATTGGAGACCTCCAGCCCCTAGAGCCTCCCAAAGCCTCTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAATTGGAGACCTCCAGCCCCTAGAGCCTCCCAAAGCCTCTTATA  100

seq1  GGGAGGGTTCCTAATCACCCTGTGGGCTCCAGATTTTTTTCTGCCCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGTTCCTAATCACCCTGTGGGCTCCAGATTTTTTTCTGCCCCTCC  150

seq1  TTTCATCTCCCCTTAGTGTGATTTTTTTTCCCTCCTTGGCCATCAGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTCCCCTTAGTGTGATTTTTTTTCCCTCCTTGGCCATCAGTCTG  200

seq1  CTTAATACAGGAGACTTGTCTCAGTGATTCAACAAGTGCCTGTATCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATACAGGAGACTTGTCTCAGTGATTCAACAAGTGCCTGTATCCTCT  250

seq1  ATCTGGAGGGGTGACAGCAACCAGAGAGCAACCTTCTAGAATCATTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAGGGGTGACAGCAACCAGAGAGCAACCTTCTAGAATCATTTCTC  300

seq1  AGCCTGACCTAAGACCTGGGTTGGGAGCTGCTTCTTCCTGGCTGCGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGACCTAAGACCTGGGTTGGGAGCTGCTTCTTCCTGGCTGCGGGAG  350

seq1  AGGTGGTATCTGAACTCATCATTAGCCGACCTGACCAGCCCAGGAAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTATCTGAACTCATCATTAGCCGACCTGACCAGCCCAGGAAGACT  400

seq1  CTAAGGAGTGTGTGGTAGAAAGGAGATATACCAGAGGGGAATGGTTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAGTGTGTGGTAGAAAGGAGATATACCAGAGGGGAATGGTTGGGA  450

seq1  AGCCCTTTATCATACTAAAGGATGATTCAATGAAAAATAAGAGGACACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTTATCATACTAAAGGATGATTCAATGAAAAATAAGAGGACACAG  500

seq1  CACCCACTTTCTTAAGCCCCAAAGCTATTCATCCTCAGGGTAGGCAGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTTTCTTAAGCCCCAAAGCTATTCATCCTCAGGGTAGGCAGGAT  550

seq1  GGGAGGATGGGAGTTGGGGTGGA  573
      |||||||||||||||||||||||
seq2  GGGAGGATGGGAGTTGGGGTGGA  573