BAC Information

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BAC

Clone NameB6Ng01-103L05
Chromosome11 (Build37)
Map Location 120,659,798 - 120,796,757
singlet/doubletdoublet
Overlap geneFasn, Ccdc57, LOC100043454
Upstream gene4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l
Downstream geneSlc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103L05.bB6Ng01-103L05.g
ACCDH912211DH912212
length609281
definitionDH912211|Mus musculus domesticus DNA, BAC clone: B6Ng01-103L05, 5' end.DH912212|Mus musculus domesticus DNA, BAC clone: B6Ng01-103L05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,659,798 - 120,660,460)(120,796,477 - 120,796,757)
sequence
gaattccacgaagctttgtgtaagacctatcaaatcaaaggtcaatagga
attgctatgtctaaaatatcttaagtaagaacttcctgcacctgtgtgtg
aattcactgtggttttttttttccccttataagatgacagaaaaatatgc
ccattgtcattgttcagataattctgagctatgtccttgctctgaccagt
ttctgggtgtgcattcaataaactattcttgcttaactgaagtcagtgtt
cacatggtttgtgcggtgattcttgaaccccaaggatagcagttctggca
ctcttgatcttgtctatagatctgagcttctacctggtacaattgcccct
tgagctaaagtttcttcttcttcttcttcttcttcttcttcttcttcttc
ttcttcttcttcttcttcttcttcttctccttctccttctccttctcctt
ctccttctccttctccttctccttctccttctccttctccttctccttct
ccttcccccttccctcctcctcctccaccacctcctcctcttcttcttct
tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc
ttctccttc
aaatattgattctggggaatccacttccttccataacacacaggctctta
tggaccttcactttacagatgagaggatggatgcttgagggactcaggtg
acacatattctggctctctttctctctctctcttttgtttttttttttgt
ttttttgttttttttgtttttttttgtttttcaagacagggtttctctgt
gtagccctggctgtcctgaaactcactctgtagaccaagctggcctcgaa
ctcaaaaatctgcctgctgtgcgggcggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_120659798_120660460
seq2: B6Ng01-103L05.b_42_650

seq1  GAATTCCACGAAGCTTTGTGTAAGACCTATCAAATCAAAGGTCAATAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGAAGCTTTGTGTAAGACCTATCAAATCAAAGGTCAATAGGA  50

seq1  ATTGCTATGTCTAAAATATCTTAAGTAAGAACTTCCTGCACCTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTATGTCTAAAATATCTTAAGTAAGAACTTCCTGCACCTGTGTGTG  100

seq1  AATTCACTGTGGTTTTTTTTTTCCCCTTATAAGATGACAGAAAAATATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACTGTGGTTTTTTTTTTCCCCTTATAAGATGACAGAAAAATATGC  150

seq1  CCATTGTCATTGTTCAGATAATTCTGAGCTATGTCCTTGCTCTGACCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTCATTGTTCAGATAATTCTGAGCTATGTCCTTGCTCTGACCAGT  200

seq1  TTCTGGGTGTGCATTCAATAAACTATTCTTGCTTAACTGAAGTCAGTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTGTGCATTCAATAAACTATTCTTGCTTAACTGAAGTCAGTGTT  250

seq1  CACATGGTTTGTGCGGTGATTCTTGAACCCCAAGGATAGCAGTTCTGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTTTGTGCGGTGATTCTTGAACCCCAAGGATAGCAGTTCTGGCA  300

seq1  CTCTTGATCTTGTCTATAGATCTGAGCTTCTACCTGGTACAATTGCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGATCTTGTCTATAGATCTGAGCTTCTACCTGGTACAATTGCCCCT  350

seq1  TGAGCTAAAGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAAAGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  400

seq1  TTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTCCTTCTCCTTCTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTCCTTCTCCTTCTCCTT  450

seq1  CTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCT  500

seq1  CCTTCCCCCTTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC  550
      ||||||||||||                                      
seq2  CCTTCCCCCTTC--------------------------------------  512

seq1  TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTC  600
                      |||||||||||||| || ||||||||||||||||
seq2  ----------------CCTCCTCCTCCTCCACCACCTCCTCCTCTTCTTC  546

seq1  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  596

seq1  CTTCTTCTTCTTC  663
      |||||||| ||||
seq2  CTTCTTCTCCTTC  609

seq1: chr11_120796477_120796757
seq2: B6Ng01-103L05.g_75_355 (reverse)

seq1  CCACCGCCCGCACAGCAGGCAGATTTTTGAGTTCGAGGCCAGCTTGGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGCCCGCACAGCAGGCAGATTTTTGAGTTCGAGGCCAGCTTGGTCT  50

seq1  ACAGAGTGAGTTTCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTGAGTTTCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTG  100

seq1  AAAAACAAAAAAAAACAAAAAAAACAAAAAAACAAAAAAAAAAACAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAAAAAACAAAAAAAACAAAAAAACAAAAAAAAAAACAAAAG  150

seq1  AGAGAGAGAGAAAGAGAGCCAGAATATGTGTCACCTGAGTCCCTCAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAAAGAGAGCCAGAATATGTGTCACCTGAGTCCCTCAAGCA  200

seq1  TCCATCCTCTCATCTGTAAAGTGAAGGTCCATAAGAGCCTGTGTGTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCTCTCATCTGTAAAGTGAAGGTCCATAAGAGCCTGTGTGTTATG  250

seq1  GAAGGAAGTGGATTCCCCAGAATCAATATTT  281
      |||||||||||||||||||||||||||||||
seq2  GAAGGAAGTGGATTCCCCAGAATCAATATTT  281