BAC Information

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BAC

Clone NameB6Ng01-104K15
Chromosome11 (Build37)
Map Location 114,763,995 - 114,928,303
singlet/doubletdoublet
Overlap geneCd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e
Upstream geneSdk2, LOC100041739, LOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c
Downstream geneCd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104K15.bB6Ng01-104K15.g
ACCDH912894DH912895
length963582
definitionDH912894|Mus musculus domesticus DNA, BAC clone: B6Ng01-104K15, 5' end.DH912895|Mus musculus domesticus DNA, BAC clone: B6Ng01-104K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,763,995 - 114,764,956)(114,927,723 - 114,928,303)
sequence
gaattcttgctgggtggtggtgcacacctttgatcctagcacttgggagg
cagaggcaggcaggtctctgagtttgagaccagcttggtttacagagtga
gttctaggacagccagggctacacagagaaaccctgtgtcaacaaacaaa
caaatgacgggattctttatagcccagattagcctttgaacttgctgtgt
ggtcaaggatgactttttagttaatgttttattgccgtgaagagacccca
tgatcaaggtgactcttatagcagaaaacatttaactggggctggcttac
agttcagaggttcagtccattatcatcatggcaggaagggctttcttctc
cagcctgaatcctttagatttcagttcatgtaccccaccctcctccgcct
gtgcatgtgctcgtggtatgcacacccatgactcatccccccttcttgta
ctaatgttttgagacataaaaggggaaacacacatacacggatggataca
cgcccaaagccaggttccacggtgtgtgggaaatgtgtcaggacagtagg
gactatgggtacagcaaacagagccctgatctgctctcagctctgtccca
ggccataaccccaaacccaccagtggttcttttctcttgaaagagcagtg
ggcactgggacgcgcagatgggacttaagagtcttaagaggggaagtagg
gatgctgtggccaaaaatagagggctacgcccatgaacagctcggacaca
aaggtttagtttgggtgactaaattagactgccaactaggagggatgggt
agggaaaggggagccctgcttcccagtgtgagtcattcattgtgggtggc
ccaagtgcccagttcagaggcagttttcatcacctatggacatgtctctt
cctcactttcttctcctcatctgtttcctcttcctgctgcctggggcaaa
atcagcccagggc
gaattctgcttgcccaatgaatttgagaactcagtaatatataaaaatgt
ggctcatctgtttgcggaagctgccagccactctttaaaaattgggaggc
ctatgttaattattatgagagtggaagccacaagagtttcggtttgccta
cctccagttcttctttttcggggaagctgtagttcccactcctttttttt
ttttttttttccattttttattaggtatttagctcatttacatttccaat
gctataccaaaagtcccccttacccacccagttcccactcctgagatgag
gaagaaacaaaagaccaagtgcaaaggagaaaatcaggacaagagaaagg
gtctggagccagctagctgcaggagtccccagccccggattcggcagagg
aagcagaaaggctaggtagtggtctggttctagtgatctggttctgtctg
ggtcagtgtgggaggctggtgttgggtttgtcagggtgccctggcctggt
gtggtgggagaggatggggggctgctctcgggaggggagagggagaacag
gatgggacttgagggcttttcggttcagctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_114763995_114764956
seq2: B6Ng01-104K15.b_46_1008

seq1  GAATTCTTGCTGGGTGGTGGTGCACACCTTTGATCCTAGCACTTGGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTGGGTGGTGGTGCACACCTTTGATCCTAGCACTTGGGAGG  50

seq1  CAGAGGCAGGCAGGTCTCTGAGTTTGAGACCAGCTTGGTTTACAGAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGCAGGTCTCTGAGTTTGAGACCAGCTTGGTTTACAGAGTGA  100

seq1  GTTCTAGGACAGCCAGGGCTACACAGAGAAACCCTGTGTCAACAAACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGGACAGCCAGGGCTACACAGAGAAACCCTGTGTCAACAAACAAA  150

seq1  CAAATGACGGGATTCTTTATAGCCCAGATTAGCCTTTGAACTTGCTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGACGGGATTCTTTATAGCCCAGATTAGCCTTTGAACTTGCTGTGT  200

seq1  GGTCAAGGATGACTTTTTAGTTAATGTTTTATTGCCGTGAAGAGACCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGGATGACTTTTTAGTTAATGTTTTATTGCCGTGAAGAGACCCCA  250

seq1  TGATCAAGGTGACTCTTATAGCAGAAAACATTTAACTGGGGCTGGCTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAGGTGACTCTTATAGCAGAAAACATTTAACTGGGGCTGGCTTAC  300

seq1  AGTTCAGAGGTTCAGTCCATTATCATCATGGCAGGAAGGGCTTTCTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGAGGTTCAGTCCATTATCATCATGGCAGGAAGGGCTTTCTTCTC  350

seq1  CAGCCTGAATCCTTTAGATTTCAGTTCATGTACCCCACCCTCCTCCGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGAATCCTTTAGATTTCAGTTCATGTACCCCACCCTCCTCCGCCT  400

seq1  GTGCATGTGCTCGTGGTATGCACACCCATGACTCATCCCCCCTTCTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGTGCTCGTGGTATGCACACCCATGACTCATCCCCCCTTCTTGTA  450

seq1  CTAATGTTTTGAGACATAAAAGGGGAAACACACATACACGGATGGATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTTTTGAGACATAAAAGGGGAAACACACATACACGGATGGATACA  500

seq1  CGCCCAAAGCCAGGTTCCACGGTGTGTGGGAAATGTGTCAGGACAGTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCAAAGCCAGGTTCCACGGTGTGTGGGAAATGTGTCAGGACAGTAGG  550

seq1  GACTATGGGTACAGCAAACAGAGCCCTGATCTGCTCTCAGCTCTGTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGGGTACAGCAAACAGAGCCCTGATCTGCTCTCAGCTCTGTCCCA  600

seq1  GGCCATAACCCCAAACCCACCAGTGGTTCTTTTCTCTTGAAAGAGCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAACCCCAAACCCACCAGTGGTTCTTTTCTCTTGAAAGAGCAGTG  650

seq1  GGCACTGGGACGCGCAGATGGGACTTAAGAGTCTTAAGAGGGGAAGTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGGGACGCGCAGATGGGACTTAAGAGTCTTAAGAGGGGAAGTAGG  700

seq1  GATGCTGTGGCCAAAAATAGAGGGCTACGCCCATGAACAGCTCGGACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGTGGCCAAAAATAGAGGGCTACGCCCATGAACAGCTCGGACACA  750

seq1  AAGGTTTAG-TTGGGTGACTAAATTAGACTGCCAACTAGGAGGGATGGGT  799
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTAGTTTGGGTGACTAAATTAGACTGCCAACTAGGAGGGATGGGT  800

seq1  AGGGAAAGGGGAGCCCTGCTTCCCAGTGTGAGTCACTCATTGTGGGTGGC  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGGGAAAGGGGAGCCCTGCTTCCCAGTGTGAGTCATTCATTGTGGGTGGC  850

seq1  CCAAGTGCCCAG-TCAGAGGCAGTTTTCATCACCTATGGACATGTCTCTT  898
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGCCCAGTTCAGAGGCAGTTTTCATCACCTATGGACATGTCTCTT  900

seq1  CCTTCACTTTCTTCTCCTCATCTGTTTCCTCTTCCTGCTGCCT-GGGCCA  947
      || |||||||||||||||||||||||||||||||||||||||| |||| |
seq2  CC-TCACTTTCTTCTCCTCATCTGTTTCCTCTTCCTGCTGCCTGGGGCAA  949

seq1  GATCAGCCCAAGGGC  962
       |||||||| |||||
seq2  AATCAGCCC-AGGGC  963

seq1: chr11_114927723_114928303
seq2: B6Ng01-104K15.g_68_649 (reverse)

seq1  ACAGCTGAAGCCTAAAGCCCTCTAGTCCCTTCCTGTTCTCCCTCT-CCCT  49
      ||||||||| |  ||||||||| |||||| ||||||||||||||| ||||
seq2  ACAGCTGAACCGAAAAGCCCTCAAGTCCCATCCTGTTCTCCCTCTCCCCT  50

seq1  CCCGAGAGCAGCCCCCCATCCTCTCCCACCACACCAGGCCAGGGCACCCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGAGCAGCCCCCCATCCTCTCCCACCACACCAGGCCAGGGCACCCT  100

seq1  GACAAACCCAACACCAGCCTCCCACACTGACCCAGACAGAACCAGATCAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACCCAACACCAGCCTCCCACACTGACCCAGACAGAACCAGATCAC  150

seq1  TAGAACCAGACCACTACCTAGCCTCTCTGCTTCCTCTGCCGAATCCGGGG  199
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAGAACCAGACCACTACCTAGCCTTTCTGCTTCCTCTGCCGAATCCGGGG  200

seq1  CTGGGGACTCCTGCAGCTAGCTGGCTCCAGACCCTTTCTCTTGTCCTGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGACTCCTGCAGCTAGCTGGCTCCAGACCCTTTCTCTTGTCCTGAT  250

seq1  TTTCTCCTTTGCACTTGGTCTTTTGTTTCTTCCTCATCTCAGGAGTGGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTTGCACTTGGTCTTTTGTTTCTTCCTCATCTCAGGAGTGGGA  300

seq1  ACTGGGTGGGTAAGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTGGGTAAGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAG  350

seq1  CTAAATACCTAATAAAAAATGGAAAAAAAAAAAAAAAAAAGGAGTGGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATACCTAATAAAAAATGGAAAAAAAAAAAAAAAAAAGGAGTGGGAA  400

seq1  CTACAGCTTCCCCGAAAAAGAAGAACTGGAGGTAGGCAAACCGAAACTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCTTCCCCGAAAAAGAAGAACTGGAGGTAGGCAAACCGAAACTCT  450

seq1  TGTGGCTTCCACTCTCATAATAATTAACATAGGCCTCCCAATTTTTAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTCCACTCTCATAATAATTAACATAGGCCTCCCAATTTTTAAAG  500

seq1  AGTGGCTGGCAGCTTCCGCAAACAGATGAGCCACATTTTTATATATTACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGGCAGCTTCCGCAAACAGATGAGCCACATTTTTATATATTACT  550

seq1  GAGTTCTCAAATTCATTGGGCAAGCAGAATTC  581
      ||||||||||||||||||||||||||||||||
seq2  GAGTTCTCAAATTCATTGGGCAAGCAGAATTC  582