BAC Information

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BAC

Clone NameB6Ng01-106I02
Chromosome11 (Build37)
Map Location 68,650,617 - 68,801,066
singlet/doubletdoublet
Overlap geneNdel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas
Upstream geneLOC100041899, Usp43, Wdr16, Stx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10
Downstream gene1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106I02.bB6Ng01-106I02.g
ACCDH914225DH914226
length897656
definitionDH914225|Mus musculus domesticus DNA, BAC clone: B6Ng01-106I02, 5' end.DH914226|Mus musculus domesticus DNA, BAC clone: B6Ng01-106I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,650,617 - 68,651,509)(68,800,414 - 68,801,066)
sequence
gaattctctatgtagatgaggctggcctcaaacttgcaaagatgcaactg
tttttgtttccagtataccaggtttaaaggcatgcattaccacatctcag
attttttaaactaccactatgaaatcatttttcaatactgaatttttaat
atttccaattatatacctaccctgaaaatatcttcatatgttaaaagaaa
aaggatataaagaggcaaatctctgagaattcaaagccaaccttgtctac
acagaaagttccaggatagccagggctatgcagaaagaccctattgcaga
aaaagaaaaacaggccagacggcagtggcgcatgcctttaagcccagcac
ttggaaggcagatgcaagcagacctctgtgagtttgggaccagcatgagc
tacagaggaagttccaagacagccagggctacacagagaaaccctgtctt
gaaaaaaaaaaaagaaaagcaaaaacaaaacaaaggatactatatgttat
ttcacttttgagatcaaaaaagtaaaaatagaattacaaactgatatatg
caatctatatccacaacagccttgttcacaagaactaaagatgcaagcaa
ccccacagcccattcacagaagagaaaaaaaaaatgatctagagtggaat
ttttaatctactttctgtaagataggggaatgaacacattctcaaaaatt
gtcctttgaactccatactaatgcttctatacccatgcaggcagacgcag
gtacagacatcacagggcatctcacacacacacacacacacacacacact
cacactcacacacacactcacacacacacactcacacacacacacactca
cacacactcacacactctcacacacacacacaacaaacacacacaca
gaattcttttgcgttaccccgggtgagttgccaaggcgcttggcattggc
ttagggtctaggaataatgtacatcagtccctcccagcctctgcccagct
gaaaagagcagctttccggatcccttttcagacatgcactgctagttgtt
aggaatcattgcttctgtccatgctcaaggcgctgacctgtgcctatctc
agatcacattcctgattcttgcttctcttaatttagcagccaccttacag
tagttgataccttccttcttagagcagagagccctggagcttgttttttg
ttgttttggcttttcaagacagggttgggtttttgtttttgtttttgttt
tttgggtttttttgttttgttttgtttttatgtgtgtatagccctggctg
tcctggaacttatgttgtagaccggctggcctcgcactcagagatccatc
tgagtgctggggttaaggcatgtgcgactactgcctggccattcattttt
cttcttgttgcttgatcagtagtggtgcctgacattggtactgacctaat
ggagtttgtagtcttttttttttttttttttttttttttttagggttggt
ttggtttcaaggaaggtctctctgtgttccccttggttggtcctggaaat
cacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_68650617_68651509
seq2: B6Ng01-106I02.b_48_944

seq1  GAATTCTCTATGTAGATGAGGCTGGCCTCAAACTTGCAAAGATGCAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATGTAGATGAGGCTGGCCTCAAACTTGCAAAGATGCAACTG  50

seq1  TTTTTGTTTCCAGTATACCAGGTTTAAAGGCATGCATTACCACATCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTCCAGTATACCAGGTTTAAAGGCATGCATTACCACATCTCAG  100

seq1  ATTTTTTAAACTACCACTATGAAATCATTTTTCAATACTGAATTTTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAACTACCACTATGAAATCATTTTTCAATACTGAATTTTTAAT  150

seq1  ATTTCCAATTATATACCTACCCTGAAAATATCTTCATATGTTAAAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAATTATATACCTACCCTGAAAATATCTTCATATGTTAAAAGAAA  200

seq1  AAGGATATAAAGAGGCAAATCTCTGAGAATTCAAAGCCAACCTTGTCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATATAAAGAGGCAAATCTCTGAGAATTCAAAGCCAACCTTGTCTAC  250

seq1  ACAGAAAGTTCCAGGATAGCCAGGGCTATGCAGAAAGACCCTATTGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGTTCCAGGATAGCCAGGGCTATGCAGAAAGACCCTATTGCAGA  300

seq1  AAAAGAAAAACAGGCCAGACGGCAGTGGCGCATGCCTTTAAGCCCAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAACAGGCCAGACGGCAGTGGCGCATGCCTTTAAGCCCAGCAC  350

seq1  TTGGAAGGCAGATGCAAGCAGACCTCTGTGAGTTTGGGACCAGCATGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGGCAGATGCAAGCAGACCTCTGTGAGTTTGGGACCAGCATGAGC  400

seq1  TACAGAGGAAGTTCCAAGACAGCCAGGGCTACACAGAGAAACCCTGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGGAAGTTCCAAGACAGCCAGGGCTACACAGAGAAACCCTGTCTT  450

seq1  GAAAAAAAAAAAAGAAAAGCAAAAACAAAACAAAGGATACTATATGTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAAAGAAAAGCAAAAACAAAACAAAGGATACTATATGTTAT  500

seq1  TTCACTTTTGAGATCAAAAAAGTAAAAATAGAATTACAAACTGATATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTTGAGATCAAAAAAGTAAAAATAGAATTACAAACTGATATATG  550

seq1  CAATCTATATCCACAACAGCCTTGTTCACAAGAACTAAAGATGCAAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTATATCCACAACAGCCTTGTTCACAAGAACTAAAGATGCAAGCAA  600

seq1  CCCCACAGCCCATTCACAGAAGAGAAAAAAAAAATGATCTAGAGTGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAGCCCATTCACAGAAGAGAAAAAAAAAATGATCTAGAGTGGAAT  650

seq1  TTTTAATCTACTTTCTGTAAGATAGGGGAATGAACACATTCTCAAAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCTACTTTCTGTAAGATAGGGGAATGAACACATTCTCAAAAATT  700

seq1  GTCCTTTGAACTCCATACTAATGCTTCTATACCCATGCAGGCAGACGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTGAACTCCATACTAATGCTTCTATACCCATGCAGGCAGACGCAG  750

seq1  GTACAGACATCACA-GGCATCTCACACACACACACACACACACACACACA  799
      |||||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  GTACAGACATCACAGGGCATCTCACACACACACACACACACACACACACT  800

seq1  CACACACACACACACACTCACACACACACACTCACACACACACACACTCA  849
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCACACACACACTCACACACACACACTCACACACACACACACTCA  850

seq1  CACACACTCACACACTCTCACACACACAC---ACACACACACACACA  893
      |||||||||||||||||||||||||||||   ||| |||||||||||
seq2  CACACACTCACACACTCTCACACACACACACAACAAACACACACACA  897

seq1: chr11_68800414_68801066
seq2: B6Ng01-106I02.g_67_722 (reverse)

seq1  AAAGTGAGTTCCAGGAC--AGCCAGGGCTACACAGAGAGACCTTGCCTGA  48
      ||||||| |||||||||  | | ||||  ||||||||||||||| | |||
seq2  AAAGTGATTTCCAGGACCAACCAAGGGGAACACAGAGAGACCTTCCTTGA  50

seq1  AACCAAACCAAACC-AAAAAAAAAAAAAAAAAAAAAAAAAAAAGACTACA  97
      ||||||||||| || |||||||||||||||||||||||||||||||||||
seq2  AACCAAACCAACCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACTACA  100

seq1  AACTCCATTAGGTCAGTACCAATGTCAGGCACCACTACTGATCAAGCAAC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCATTAGGTCAGTACCAATGTCAGGCACCACTACTGATCAAGCAAC  150

seq1  AAGAAGAAAAATGAATGGCCAGGCAGTAGTCGCACATGCCTTAACCCCAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAAATGAATGGCCAGGCAGTAGTCGCACATGCCTTAACCCCAG  200

seq1  CACTCAGATGGATCTCTGAGTGCGAGGCCAGCCGGTCTACAACATAAGTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGATGGATCTCTGAGTGCGAGGCCAGCCGGTCTACAACATAAGTT  250

seq1  CCAGGACAGCCAGGGCTATACACACATAAAAACAAAACAAAACAAAAAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACAGCCAGGGCTATACACACATAAAAACAAAACAAAACAAAAAAA  300

seq1  CCCAAAAAACAAAAACAAAAACAAAAACCCAACCCTGTCTTGAAAAGCCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAAACAAAAACAAAAACAAAAACCCAACCCTGTCTTGAAAAGCCA  350

seq1  AAACAACAAAAAACAAGCTCCAGGGCTCTCTGCTCTAAGAAGGAAGGTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACAAAAAACAAGCTCCAGGGCTCTCTGCTCTAAGAAGGAAGGTAT  400

seq1  CAACTACTGTAAGGTGGCTGCTAAATTAAGAGAAGCAAGAATCAGGAATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTACTGTAAGGTGGCTGCTAAATTAAGAGAAGCAAGAATCAGGAATG  450

seq1  TGATCTGAGATAGGCACAGGTCAGCGCCTTGAGCATGGACAGAAGCAATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGAGATAGGCACAGGTCAGCGCCTTGAGCATGGACAGAAGCAATG  500

seq1  ATTCCTAACAACTAGCAGTGCATGTCTGAAAAGGGATCCGGAAAGCTGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAACAACTAGCAGTGCATGTCTGAAAAGGGATCCGGAAAGCTGCT  550

seq1  CTTTTCAGCTGGGCAGAGGCTGGGAGGGACTGATGTACATTATTCCTAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAGCTGGGCAGAGGCTGGGAGGGACTGATGTACATTATTCCTAGA  600

seq1  CCCTAAGCCAATGCCAAGCGCCTTGGCAACTCACCCGGGGTAACGCAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGCCAATGCCAAGCGCCTTGGCAACTCACCCGGGGTAACGCAAAA  650

seq1  GAATTC  653
      ||||||
seq2  GAATTC  656