BAC Information

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BAC

Clone NameB6Ng01-107E20
Chromosome11 (Build37)
Map Location 52,643,846 - 52,788,951
singlet/doubletdoublet
Overlap geneFstl4
Upstream genePhf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
Downstream geneLOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107E20.bB6Ng01-107E20.g
ACCDH914805DH914806
length657960
definitionDH914805|Mus musculus domesticus DNA, BAC clone: B6Ng01-107E20, 5' end.DH914806|Mus musculus domesticus DNA, BAC clone: B6Ng01-107E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,643,846 - 52,644,502)(52,788,286 - 52,788,951)
sequence
gaattctgaactctgctatattcgagggactaagagagccctctgcacac
acaaggcatcctgttagctgctaatgtaaacaaaccccaccgttagggct
ctatctctgcttccctgtaaatactccaaactcactttaggttctgccaa
cttaactgaacttcttctgagccattttagatcctccagtttaggaagca
aatgcaagcttctccaagatctgagtctgatcccctctccatagttgttt
caaacataaggtagtctgcaagtctacaactgcattttgtttgacttgta
ttatcgacttataggagctttttgttttgttttaattttgatttgaatga
gttgccattaaaaaggggagcattttgcatatattactcaaaatgattct
gagcctacatagcacccagcaaaaaccacactggaggcagatctgccccc
agatgtgcagtcttccctgtctgatgcagttcacacacgccactccctta
ggcacctccataccatgagctagatgcagttcaggaaatgagtgaagcct
tggaaagttgcattcatcaagctatctatgtgactttaggaaacatttgg
gttaatttattctacactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtg
gaattctttatacttccctagtaactttccagtaaccctaaaaacacaag
gcatccaagttttagggaccaatttcgacttttagctagaacatggatgt
ttacaaaatattgtttccactctttgaaaacttttgatgcatcttataat
gcacaatgataagtgcagcagttaagattggtggtcaacttgacaggctc
tagaatcatcttggagacaagtccctgggcgtgactatgaggagtttcca
gattaggaagcagaggtgggaagactcacatgggtggtggcaaaccacag
cctgaacataaaggggattgtgagctgagctccagcatccatctctctct
gtttcctgacctctcacgtacaatgtgacctgctgcctcaggctcccggc
accaagactttctcaccatggtggagtgggccctggaattatgagcccaa
atagatgctgcctttcttaggctgcttttttcccaagtatttcaagcatt
ttttttcaagcagtaagaaaagtggctaacacaatgtgtttcatcatgaa
aggttttcatgtatgtataggatgaatttggctggattcgtcttctcttt
tctccatcctcctctactggacctttcagcctctccgttttctgctttcc
tcttgtctgtgtgggttgacccaacagtctcacactaggttgtgtaagga
gaatgcgtgccttatcactggctacacaccattccagcccagacgtctcc
tctccagccagctatacaaacactcagacctactgtttctactttcacaa
caaggaaatatcaaacaaactagaatcctatgataataagaaaggaatac
atgcctaggtgaggtaaatccagacagaacacgccttgaattgaagcata
tggaatctatgatctgaattaaagatttaaatggtctttggtagtagtag
agctgattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_52643846_52644502
seq2: B6Ng01-107E20.b_40_696

seq1  GAATTCTGAACTCTGCTATATTCGAGGGACTAAGAGAGCCCTCTGCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAACTCTGCTATATTCGAGGGACTAAGAGAGCCCTCTGCACAC  50

seq1  ACAAGGCATCCTGTTAGCTGCTAATGTAAACAAACCCCACCGTTAGGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCATCCTGTTAGCTGCTAATGTAAACAAACCCCACCGTTAGGGCT  100

seq1  CTATCTCTGCTTCCCTGTAAATACTCCAAACTCACTTTAGGTTCTGCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCTGCTTCCCTGTAAATACTCCAAACTCACTTTAGGTTCTGCCAA  150

seq1  CTTAACTGAACTTCTTCTGAGCCATTTTAGATCCTCCAGTTTAGGAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTGAACTTCTTCTGAGCCATTTTAGATCCTCCAGTTTAGGAAGCA  200

seq1  AATGCAAGCTTCTCCAAGATCTGAGTCTGATCCCCTCTCCATAGTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAGCTTCTCCAAGATCTGAGTCTGATCCCCTCTCCATAGTTGTTT  250

seq1  CAAACATAAGGTAGTCTGCAAGTCTACAACTGCATTTTGTTTGACTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATAAGGTAGTCTGCAAGTCTACAACTGCATTTTGTTTGACTTGTA  300

seq1  TTATCGACTTATAGGAGCTTTTTGTTTTGTTTTAATTTTGATTTGAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCGACTTATAGGAGCTTTTTGTTTTGTTTTAATTTTGATTTGAATGA  350

seq1  GTTGCCATTAAAAAGGGGAGCATTTTGCATATATTACTCAAAATGATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCATTAAAAAGGGGAGCATTTTGCATATATTACTCAAAATGATTCT  400

seq1  GAGCCTACATAGCACCCAGCAAAAACCACACTGGAGGCAGATCTGCCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTACATAGCACCCAGCAAAAACCACACTGGAGGCAGATCTGCCCCC  450

seq1  AGATGTGCAGTCTTCCCTGTCTGATGCAGTTCACACACGCCACTCCCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGCAGTCTTCCCTGTCTGATGCAGTTCACACACGCCACTCCCTTA  500

seq1  GGCACCTCCATACCATGAGCTAGATGCAGTTCAGGAAATGAGTGAAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTCCATACCATGAGCTAGATGCAGTTCAGGAAATGAGTGAAGCCT  550

seq1  TGGAAAGTTGCATTCATCAAGCTATCTATGTGACTTTAGGAAACATTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTTGCATTCATCAAGCTATCTATGTGACTTTAGGAAACATTTGG  600

seq1  GTTAATTTATTCTACACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTATTCTACACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  650

seq1  GTGTGTG  657
      |||||||
seq2  GTGTGTG  657

seq1: chr11_52788286_52788951
seq2: B6Ng01-107E20.g_67_732 (reverse)

seq1  ACCCACACAGACAAGAGGAAAGCAGAAAACGGAGAGGCTGAAAGGTCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACAGACAAGAGGAAAGCAGAAAACGGAGAGGCTGAAAGGTCCAG  50

seq1  TAGAGGAGGATGGAGAAAAGAGAAGACGAATCCAGCCAAATTCATCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAGGATGGAGAAAAGAGAAGACGAATCCAGCCAAATTCATCCTAT  100

seq1  ACATACATGAAAACCTTTCATGATGAAACACATTGTGTTAGCCACTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGAAAACCTTTCATGATGAAACACATTGTGTTAGCCACTTTTC  150

seq1  TTACTGCTTGAAAAAAAATGCTTGAAATACTTGGGAAAAAAGCAGCCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTTGAAAAAAAATGCTTGAAATACTTGGGAAAAAAGCAGCCTAA  200

seq1  GAAAGGCAGCATCTATTTGGGCTCATAATTCCAGGGCCCACTCCACCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCAGCATCTATTTGGGCTCATAATTCCAGGGCCCACTCCACCATG  250

seq1  GTGAGAAAGTCTTGGTGCCGGGAGCCTGAGGCAGCAGGTCACATTGTACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAAGTCTTGGTGCCGGGAGCCTGAGGCAGCAGGTCACATTGTACG  300

seq1  TGAGAGGTCAGGAAACAGAGAGAGATGGATGCTGGAGCTCAGCTCACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGTCAGGAAACAGAGAGAGATGGATGCTGGAGCTCAGCTCACAAT  350

seq1  CCCCTTTATGTTCAGGCTGTGGTTTGCCACCACCCATGTGAGTCTTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTATGTTCAGGCTGTGGTTTGCCACCACCCATGTGAGTCTTCCCA  400

seq1  CCTCTGCTTCCTAATCTGGAAACTCCTCATAGTCACGCCCAGGGACTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTTCCTAATCTGGAAACTCCTCATAGTCACGCCCAGGGACTTGT  450

seq1  CTCCAAGATGATTCTAGAGCCTGTCAAGTTGACCACCAATCTTAACTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGATGATTCTAGAGCCTGTCAAGTTGACCACCAATCTTAACTGCT  500

seq1  GCACTTATCATTGTGCATTATAAGATGCATCAAAAGTTTTCAAAGAGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTATCATTGTGCATTATAAGATGCATCAAAAGTTTTCAAAGAGTGG  550

seq1  AAACAATATTTTGTAAACATCCATGTTCTAGCTAAAAGTCGAAATTGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATATTTTGTAAACATCCATGTTCTAGCTAAAAGTCGAAATTGGTC  600

seq1  CCTAAAACTTGGATGCCTTGTGTTTTTAGGGTTACTGGAAAGTTACTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAACTTGGATGCCTTGTGTTTTTAGGGTTACTGGAAAGTTACTAGG  650

seq1  GAAGTATAAAGAATTC  666
      ||||||||||||||||
seq2  GAAGTATAAAGAATTC  666