BAC Information

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BAC

Clone NameB6Ng01-108F06
Chromosome11 (Build37)
Map Location 121,514,144 - 121,697,506
singlet/doubletdoublet
Overlap geneB3gntl1, Metrnl, Ptchd3
Upstream gene5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750
Downstream geneLOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108F06.bB6Ng01-108F06.g
ACCDH915541DH915542
length1,1101,084
definitionDH915541|Mus musculus domesticus DNA, BAC clone: B6Ng01-108F06, 5' end.DH915542|Mus musculus domesticus DNA, BAC clone: B6Ng01-108F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,696,416 - 121,697,506)(121,514,144 - 121,515,233)
sequence
gaattcaatgacgttgatcacattccaaaaggagttttttacctgttctc
attccagtaaggaggctgcagtccagaattatctgggaaagcaaaacctt
gcagcatctcagagacctgctagcaggatcctggaggaaccatagacctg
ctaggaggagcctggaggaaccatagacctgctaggaggagcctggagga
gccatagacctgctaggaggagcctggatagccaagccactgagagatcc
tcagtctgcccagcggagtttacagagaactctaggatgggtttttcata
aatcatcacccatgttaagctgtgctttctggtgatgcagatattctttt
tgagtcatccctgctcctataagtacccctaacccatactccttttagga
atcccatttaaaaacttattacatcaacaaactaactctgttgcaatcat
tactttgatctgttgtgtttcccttctgggtggatagatatgtgttgtgt
cttcccaagaaaataatgtcatacaataaccacacaaatgatgtttcagt
taacaaggttatttggggcagtgtaaaatgcatgatcaataggagttcca
gaaaattaaaatggggctgaaaacatgtcagctagtgaatgaacaggtaa
atatgaaggaaaataaaaactaacacagaataatcttcaagaaaattcat
agtgaaggacttagtagctattcagacctaaaaaaccccccaaaaaacaa
aaaaacctctttcttaaagaagttttaaaagatgctggagaaatggctca
acagttacgagcactagtggttcttccagtggtccagtgtttggttccca
gcatccacatagtgggctcatcattaggtgatccaccaccatcttctgtc
ctccatgcaccagtatgtatacagcacattggcatacatgcaagcaaaca
cccattatacaagaaataaaaaattctttaaattcactaacttatttcat
caatatatttatttaatatctttgtccaatatgccacttctcattttatt
tatttattaacctctcaagcactgccccctctggtcttccttcacagact
ctcccccatt
gaattcttcctttgaagagagccgaccaacacctgaatcacatcaccaga
gagttacagtcttgatgccactgagaaaatcacacaaagcaaaatggatg
tgaacagagttgaaacaataaatctctttggtatttgaagttgagaccgg
cttaggaaagttgtcagtcctgagggaaccagccaaatgtgagaatacac
acacacacacacacacacacacacacacacacacacaatcacgagggggg
ggggcgcacttggggaagacagagacaccagggggcaggaggagcaatgc
tatgactgaaaacagaaaagcaagacacaagacaatgcgaggctgcccta
tttgctcatgctcctaagatccaccccaaacctgatcctcctgccaggtt
cgtaagaagtagcagtttaatttccagcactaatctctagaacttggcca
gtccaaaccagttaacaaaggccagattttgaaaaaccattagcataaac
aaaagcaaaggaggagatgaccaagaaaggtcatgtgatacctcctaccc
tgagatagatctgcaacaatgtgatacctcctaccctgagacagatctgc
aaccaccaggaaaccccagggccatccctgcagagcaaggcaagcatgag
aataaacccctcctcagaacctcaccaacaaaaacaacaagtccttcttc
ataagcacgctaaaattaaacagaattctgttacaaacgttgcttatgga
aagtcagattttaagagagagactgaatccacgaatctgtaatgaagggg
gtcctagcccactgagggtgctggaagtttctcacaatgaatcttgtgtt
tggaaagacaagggatttgctctaatattactgccttgaagaaagtcaat
gtttgtgcgggggctccatgtttggggaggccagtcctttttgggaggat
agttggttgctatggttccacaggaaaatcctagcttcatggagatacta
acattcttcactcctggagaggagcagaggctgtgtggttccattgcttt
gcaaagcacacacaaattctatttctgttgttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_121696416_121697506
seq2: B6Ng01-108F06.b_74_1154 (reverse)

seq1  AATGGGGGAGAGTCTTGCTGAAGGAAGGACCAGGAGGGGGGCAGTGCTTG  50
      |||||||||||||||   |||||||| ||||||   ||||||||||||||
seq2  AATGGGGGAGAGTCT--GTGAAGGAA-GACCAG--AGGGGGCAGTGCTTG  45

seq1  AGAGGTAAATAAATAAATAAAATGAGAAGTGGCATATTGGACAAAAGATA  100
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  AGAGGTTAATAAATAAATAAAATGAGAAGTGGCATATTGGAC-AAAGATA  94

seq1  TTTAAATAAATATATTGATGAAATAAGTTAGTGAATTTTAAAAGAATTTT  150
       |||||||||||||||||||||||||||||||||||||  |||||| |||
seq2  -TTAAATAAATATATTGATGAAATAAGTTAGTGAATTT--AAAGAA-TTT  140

seq1  TTTATTTCTTGTAT-ATGGGTGTTTTGCTTGCATGTATGCCAATGTGCTG  199
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  TTTATTTCTTGTATAATGGGTG-TTTGCTTGCATGTATGCCAATGTGCTG  189

seq1  TATACATTACTGGTGCATGGAGGACAGAAGATGGTGGTGGATCACCTAAT  249
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TATACA-TACTGGTGCATGGAGGACAGAAGATGGTGGTGGATCACCTAAT  238

seq1  GATGAG-CCACTATGTGGATGCTGGGAACCAAACACTGGACCACTGGAAG  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGCCCACTATGTGGATGCTGGGAACCAAACACTGGACCACTGGAAG  288

seq1  AACCACTAGTGCTCGTAACTGTTGAGCCATTTCTCCAGCATCTTTTAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTAGTGCTCGTAACTGTTGAGCCATTTCTCCAGCATCTTTTAAAA  338

seq1  CTTCTTTAAGAAAGAGGTTTTTTTGTTTTTTGGGGGGTTTTTTAGGTCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTAAGAAAGAGGTTTTTTTGTTTTTTGGGGGGTTTTTTAGGTCTG  388

seq1  AATAGCTACTAAGTCCTTCACTATGAATTTTCTTGAAGATTATTCTGTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTACTAAGTCCTTCACTATGAATTTTCTTGAAGATTATTCTGTGT  438

seq1  TAGTTTTTATTTTCCTTCATATTTACCTGTTCATTCACTAGCTGACATGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTATTTTCCTTCATATTTACCTGTTCATTCACTAGCTGACATGT  488

seq1  TTTCAGCCCCATTTTAATTTTCTGGAACTCCTATTGATCATGCATTTTAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCCCCATTTTAATTTTCTGGAACTCCTATTGATCATGCATTTTAC  538

seq1  ACTGCCCCAAATAACCTTGTTAACTGAAACATCATTTGTGTGGTTATTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCCAAATAACCTTGTTAACTGAAACATCATTTGTGTGGTTATTGT  588

seq1  ATGACATTATTTTCTTGGGAAGACACAACACATATCTATCCACCCAGAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTATTTTCTTGGGAAGACACAACACATATCTATCCACCCAGAAG  638

seq1  GGAAACACAACAGATCAAAGTAATGATTGCAACAGAGTTAGTTTGTTGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACAACAGATCAAAGTAATGATTGCAACAGAGTTAGTTTGTTGAT  688

seq1  GTAATAAGTTTTTAAATGGGATTCCTAAAAGGAGTATGGGTTAGGGGTAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAGTTTTTAAATGGGATTCCTAAAAGGAGTATGGGTTAGGGGTAC  738

seq1  TTATAGGAGCAGGGATGACTCAAAAAGAATATCTGCATCACCAGAAAGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGAGCAGGGATGACTCAAAAAGAATATCTGCATCACCAGAAAGCA  788

seq1  CAGCTTAACATGGGTGATGATTTATGAAAAACCCATCCTAGAGTTCTCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAACATGGGTGATGATTTATGAAAAACCCATCCTAGAGTTCTCTG  838

seq1  TAAACTCCGCTGGGCAGACTGAGGATCTCTCAGTGGCTTGGCTATCCAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCCGCTGGGCAGACTGAGGATCTCTCAGTGGCTTGGCTATCCAGG  888

seq1  CTCCTCCTAGCAGGTCTATGGCTCCTCCAGGCTCCTCCTAGCAGGTCTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTAGCAGGTCTATGGCTCCTCCAGGCTCCTCCTAGCAGGTCTAT  938

seq1  GGTTCCTCCAGGCTCCTCCTAGCAGGTCTATGGTTCCTCCAGGATCCTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTCCAGGCTCCTCCTAGCAGGTCTATGGTTCCTCCAGGATCCTGC  988

seq1  TAGCAGGTCTCTGAGATGCTGCAAGGTTTTGCTTTCCCAGATAATTCTGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGTCTCTGAGATGCTGCAAGGTTTTGCTTTCCCAGATAATTCTGG  1038

seq1  ACTGCAGCCTCCTTACTGGAATGAGAACAGGTAAAAAACTCCT  1091
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGCCTCCTTACTGGAATGAGAACAGGTAAAAAACTCCT  1081

seq1: chr11_121514144_121515233
seq2: B6Ng01-108F06.g_70_1153

seq1  GAATTCTTCC-TGGAAGAGAGCCGACCAACACCTGAATCACATCACCAGA  49
      |||||||||| | |||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTTGAAGAGAGCCGACCAACACCTGAATCACATCACCAGA  50

seq1  GAGTTACAGTCTTGATGCCACTGAGAAAATCACACAAAGCAAAATGGATG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACAGTCTTGATGCCACTGAGAAAATCACACAAAGCAAAATGGATG  100

seq1  TGAACAGAGTTGAAACAATAAATCTCTTTGGTATTTGAAGTTGAGACCGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGAGTTGAAACAATAAATCTCTTTGGTATTTGAAGTTGAGACCGG  150

seq1  CTTAGGAAAGTTGTCAGTCCTGAGGGAACCAGCCAAATGTGAGAATACAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAAAGTTGTCAGTCCTGAGGGAACCAGCCAAATGTGAGAATACAC  200

seq1  ACACACACACACACACACACACACACACACACACACAATCACGAGGGGGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACAATCACGAGGGGGG  250

seq1  GGGGCGCACTTGGGGAAGACAGAGACACCAGGGGGCAGGAGGAGCAATGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGCACTTGGGGAAGACAGAGACACCAGGGGGCAGGAGGAGCAATGC  300

seq1  TATGACTGAAAACAGAAAAGCAAGACACAAGACAATGCGAGGCTGCCCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTGAAAACAGAAAAGCAAGACACAAGACAATGCGAGGCTGCCCTA  350

seq1  TTTGCTCATGCTCCTAAGATCCACCCCAAACCTGATCCTCCTGCCAGGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCATGCTCCTAAGATCCACCCCAAACCTGATCCTCCTGCCAGGTT  400

seq1  CGTAAGAAGTAGCAGTTTAATTTCCAGCACTAATCTCTAGAACTTGGCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGAAGTAGCAGTTTAATTTCCAGCACTAATCTCTAGAACTTGGCCA  450

seq1  GTCCAAACCAGTTAACAAAGGCCAGATTTTGAAAAACCATTAGCATAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAACCAGTTAACAAAGGCCAGATTTTGAAAAACCATTAGCATAAAC  500

seq1  AAAAGCAAAGGAGGAGATGACCAAGAAAGGTCATGTGATACCTCCTACCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAAGGAGGAGATGACCAAGAAAGGTCATGTGATACCTCCTACCC  550

seq1  TGAGATAGATCTGCAACAATGTGATACCTCCTACCCTGAGACAGATCTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAGATCTGCAACAATGTGATACCTCCTACCCTGAGACAGATCTGC  600

seq1  AACCACCAGGAAACCCCAGGGCCATCCCTGCAGAGCAAGGCAAGCATGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCAGGAAACCCCAGGGCCATCCCTGCAGAGCAAGGCAAGCATGAG  650

seq1  AATAAACCCCTCCTCAGAACCTCACCAACAAAAACAACAAGTCCTTCTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCCCTCCTCAGAACCTCACCAACAAAAACAACAAGTCCTTCTTC  700

seq1  ATAAGCACGCTAAAATT-AACAGAATTCTGTTACAAACGTTGCTTATGGA  748
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATAAGCACGCTAAAATTAAACAGAATTCTGTTACAAACGTTGCTTATGGA  750

seq1  AAGTCAGATTTTAAGAGAGAGACTGAATCCACGAATCTGTAATGAAGGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGATTTTAAGAGAGAGACTGAATCCACGAATCTGTAATGAAGGGG  800

seq1  GTCCTAGCCCACTGAGGATGCTGGAAGTTTCTCACAATGAATCTTGTGTT  848
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTCCTAGCCCACTGAGGGTGCTGGAAGTTTCTCACAATGAATCTTGTGTT  850

seq1  TGGCAAAGACAAGGGATTTGCTCTAATATTACTGCCTTGAAGAAAGTCAA  898
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGG-AAAGACAAGGGATTTGCTCTAATATTACTGCCTTGAAGAAAGTCAA  899

seq1  TGTTTGTGCGGGGGCTCCATGTTTGGGGAGGCCAGTCC-TTTTGTGAGGG  947
      |||||||||||||||||||||||||||||||||||||| ||||| |||| 
seq2  TGTTTGTGCGGGGGCTCCATGTTTGGGGAGGCCAGTCCTTTTTGGGAGGA  949

seq1  TAGTCGGTTGCTATGGTTCCAACAGGAAAAACCTAGCTCCATGGAGATAC  997
      |||| ||||||||||||||| ||||||||| ||||||| |||||||||||
seq2  TAGTTGGTTGCTATGGTTCC-ACAGGAAAATCCTAGCTTCATGGAGATAC  998

seq1  TAACATTCCTCACTCCTGGAGAGGAGCAGTAGGCTGTGTGGTTCACACTG  1047
      |||||||| |||||||||||||||||||| |||||||||||||| || ||
seq2  TAACATTCTTCACTCCTGGAGAGGAGCAG-AGGCTGTGTGGTTC-CATTG  1046

seq1  CCTTTGCAAAAAGCCACACGACAAAATCTATTTCTGTTGTTAT  1090
       |||||||||    ||||| ||||| |||||||||||||||||
seq2  -CTTTGCAAA---GCACAC-ACAAATTCTATTTCTGTTGTTAT  1084