BAC Information

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BAC

Clone NameB6Ng01-109K21
Chromosome11 (Build37)
Map Location 61,841,211 - 61,979,638
singlet/doubletdoublet
Overlap geneSpecc1
Upstream geneKcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558
Downstream geneAdora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109K21.bB6Ng01-109K21.g
ACCDH916524DH916525
length9301,058
definitionDH916524|Mus musculus domesticus DNA, BAC clone: B6Ng01-109K21, 5' end.DH916525|Mus musculus domesticus DNA, BAC clone: B6Ng01-109K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,841,211 - 61,842,156)(61,978,581 - 61,979,638)
sequence
gaattcctgtgtgtgtgtgtttgtgtgtttgtgtgcacatgcaagtgttt
ctagcagtgccagggatgggacccagggcctagcttacagcaggcacaag
tttgagctgtgctgccgaatctcttaacaaaggatctcatcattagccac
gttgacatagctgcagaacatatcagctaaacagggcacctgtatctagg
agcctaatcactttgcttaaacagaaagaggaactgggtggctctgggag
agacagatattgtctgctgaaatggtttcttctggtcaggaaagggacag
ggatgtgaagtggtggcagcctgatctgggctgcagagctgtgtgtggtt
tatccaggggtcctgggatgctgtgaggcagaggagaccctccattctga
gtaccagcgaccaccccttaagggtggttagtcagagccttgtgtcccat
gagactggttgctggaattgcttgtcacgtgtgggtgttctttgaaagga
tggagcactgtggtttgccataccagacagagctcaagaggatgggcaga
ggcaagatggtggtagaaagattgagccttgtgatgctgttgacagcaga
gactgaggcttgggtgatgagagtgatcatggagaacagttgatggctgg
acctgggatgcccactcttctgtcttgatattcggagttttctccttggt
cttcagctacaatctgctatcatttgtttgtttgttttgttttgttttgt
ttttcgaggcagggtttttccatgtaacagaccccagagccctggctgtc
cttggacttactgtagaccagactgaccttgaactcacaaaatctgcctg
cctctgcctctggagtgctgagataaaggcatgtgccaccatgccttgga
agcaggcatttaaatctttatttttttttt
gaattccacacaatccagatcaatgtcccttggtgaaggaaggcagaagg
aaaggaaacctgtcctcagcccagctggctgctgcactcgtagccatgaa
cctcacaaatatagagcaccccacaaagaaacactgtgggcatcaacaag
acctcaacattctgatgctcaacgcttcttactggctgtcaggcagggac
cctgagccagagaactggtgcttaaaggcttcccttcctcgctgtccatt
tcaactcaacacctggctatgtagaaagactgcaaggtagaaagttattt
gaagtgaaaacccatatggtcttcaaagagattatgaaacatctaaactt
tcaataattggttttgtcttttaaattctgtgagtgtaagtacagagagc
tccagacaccattgtgaacaaactggtctagctaaacactagtttgtgaa
aggtagacacatgtgtgatttataattctttctaaacttacagacactta
acaatgagtgaaaaatattcttcagacatagtaagctgtgggtttcatca
aacaaagtatcctgaaaacttaatccaaggcatttacaaaacaagttttt
gttagcaggaaatatttttctctcaactgactggaaatatactgtcgatc
tcctccctgccatttaattataacaccacaccacaaagggtcagtttctt
ctgaaaactataattgtctttgaactcctcttgtctgtccctggatccac
ttctacagtagagaaatgacagcacccagccagagacgaccgcactgggc
tcagccacagtcgaggctgattgctcttctagtctgttttcttctagttt
caactaccatactttcttgatactaacccccacccctcacacaattggca
ttctcttgcatctcctgcttttccatttcctcagcagcatggctgacaag
tagagagatgctggcatggaaatggtttcaatttgtgagataagttcacc
ctttaaactagggcttatcaagggtaaatagaattggctagagaaataaa
aagagcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_61841211_61842156
seq2: B6Ng01-109K21.b_47_976

seq1  GAATTCCTGTGTGTGTGTGTTTGTGTGTTTGTGTGCACATGCAAGTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGTGTGTGTGTTTGTGTGTTTGTGTGCACATGCAAGTGTTT  50

seq1  CTAGCAGTGCCAGGGATGGGACCCAGGGCCTAGCTTACAGCAGGCACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGTGCCAGGGATGGGACCCAGGGCCTAGCTTACAGCAGGCACAAG  100

seq1  TTTGAGCTGTGCTGCCGAATCTCTTAACAAAGGATCTCATCATTAGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCTGTGCTGCCGAATCTCTTAACAAAGGATCTCATCATTAGCCAC  150

seq1  GTTGACATAGCTGCAGAACATATCAGCTAAACAGGGCACCTGTATCTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACATAGCTGCAGAACATATCAGCTAAACAGGGCACCTGTATCTAGG  200

seq1  AGCCTAATCACTTTGCTTAAACAGAAAGAGGAACTGGGTGGCTCTGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAATCACTTTGCTTAAACAGAAAGAGGAACTGGGTGGCTCTGGGAG  250

seq1  AGACAGATATTGTCTGCTGAAATGGTTTCTTCTGGTCAGGAAAGGGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATATTGTCTGCTGAAATGGTTTCTTCTGGTCAGGAAAGGGACAG  300

seq1  GGATGTGAAGTGGTGGCAGCCTGATCTGGGCTGCAGAGCTGTGTGTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGAAGTGGTGGCAGCCTGATCTGGGCTGCAGAGCTGTGTGTGGTT  350

seq1  TATCCAGGGGTCCTGGGATGCTGTGAGGCAGAGGAGACCCTCCATTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGGGGTCCTGGGATGCTGTGAGGCAGAGGAGACCCTCCATTCTGA  400

seq1  GTACCAGCGACCACCCCTTAAGGGTGGTTAGTCAGAGCCTTGTGTCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGCGACCACCCCTTAAGGGTGGTTAGTCAGAGCCTTGTGTCCCAT  450

seq1  GAGACTGGTTGCTGGAATTGCTTGTCACGTGTGGGTGTTCTTTGAAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGGTTGCTGGAATTGCTTGTCACGTGTGGGTGTTCTTTGAAAGGA  500

seq1  TGGAGCACTGTGGTTTGCCATACCAGACAGAGCTCAAGAGGATGGGCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCACTGTGGTTTGCCATACCAGACAGAGCTCAAGAGGATGGGCAGA  550

seq1  GGCAAGATGGTGGTAGAAAGATTGAGCCTTGTGATGCTGTTGACAGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGATGGTGGTAGAAAGATTGAGCCTTGTGATGCTGTTGACAGCAGA  600

seq1  GACTGAGGCTTGGGTGATGAGAGTGATCATGGAGAACAGTTGATGGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGGCTTGGGTGATGAGAGTGATCATGGAGAACAGTTGATGGCTGG  650

seq1  ACCTGGGATGCCCACTCTTCTGTCTTGATATTCGGAGTTTTCTCCTTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGATGCCCACTCTTCTGTCTTGATATTCGGAGTTTTCTCCTTGGT  700

seq1  CTTCAGCTACAATCTGCTATCATTTGTTTGTTTGTTTTGTTTTGTTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTACAATCTGCTATCATTTGTTTGTTTGTTTTGTTTTGTTTTGT  750

seq1  TTTTCGAGGCAGGGTTTTTCCATGTAACAGACCCCAGAGCCCTGGCTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGAGGCAGGGTTTTTCCATGTAACAGACCCCAGAGCCCTGGCTGTC  800

seq1  C-TGGACTTACTGTAGACCAGACTGACCTTGAACTCACAAAAATCTGCCT  849
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTGGACTTACTGTAGACCAGACTGACCTTGAACTCAC-AAAATCTGCCT  849

seq1  GCCTCTGCCTCTGGAGTGCTGAGATTAAAGGCATGTGCCACCATGCCTTG  899
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCCTCTGCCTCTGGAGTGCTGAGA-TAAAGGCATGTGCCACCATGCCTTG  898

seq1  GAAGCAGGCATTTAAATCTTTTTTTTTTTTTTTTTTATTTTTTTTTT  946
      ||||||||||||||||||||| ||||||||||               
seq2  GAAGCAGGCATTTAAATCTTTATTTTTTTTTT---------------  930

seq1: chr11_61978581_61979638
seq2: B6Ng01-109K21.g_66_1123 (reverse)

seq1  TAGCTCATTTTTATTCTCTTAGCCATTTCTATTTACCCTTGATAAGCCCT  50
      |||||| ||||  ||||| |||||| ||||||||||||||||||||||||
seq2  TAGCTCTTTTTATTTCTC-TAGCCAATTCTATTTACCCTTGATAAGCCCT  49

seq1  AGTCTAAGGGATGAAC-TATCTCACAAATGGAAACCATTTCCATGCCAGC  99
      ||| ||| || ||||| |||||||||||| ||||||||||||||||||||
seq2  AGTTTAAAGGGTGAACTTATCTCACAAATTGAAACCATTTCCATGCCAGC  99

seq1  ATCTCTCTACTTGTCAGCCATGCTGCTGAGGAAATGGAAAAGCAGGAGAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTACTTGTCAGCCATGCTGCTGAGGAAATGGAAAAGCAGGAGAT  149

seq1  GCAAGAGAATGCCAATTGTGTGAGGGGTGGGGGTTAGTATCAAGAAAGTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGAATGCCAATTGTGTGAGGGGTGGGGGTTAGTATCAAGAAAGTA  199

seq1  TGGTAGTTGAAACTAGAAGAAAACAGACTAGAAGAGCAATCAGCCTCGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTTGAAACTAGAAGAAAACAGACTAGAAGAGCAATCAGCCTCGAC  249

seq1  TGTGGCTGAGCCCAGTGCGGTCGTCTCTGGCTGGGTGCTGTCATTTCTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTGAGCCCAGTGCGGTCGTCTCTGGCTGGGTGCTGTCATTTCTCT  299

seq1  ACTGTAGAAGTGGATCCAGGGACAGACAAGAGGAGTTCAAAGACAATTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGAAGTGGATCCAGGGACAGACAAGAGGAGTTCAAAGACAATTAT  349

seq1  AGTTTTCAGAAGAAACTGACCCTTTGTGGTGTGGTGTTATAATTAAATGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCAGAAGAAACTGACCCTTTGTGGTGTGGTGTTATAATTAAATGG  399

seq1  CAGGGAGGAGATCGACAGTATATTTCCAGTCAGTTGAGAGAAAAATATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGGAGATCGACAGTATATTTCCAGTCAGTTGAGAGAAAAATATTT  449

seq1  CCTGCTAACAAAAACTTGTTTTGTAAATGCCTTGGATTAAGTTTTCAGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTAACAAAAACTTGTTTTGTAAATGCCTTGGATTAAGTTTTCAGGA  499

seq1  TACTTTGTTTGATGAAACCCACAGCTTACTATGTCTGAAGAATATTTTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTTTGATGAAACCCACAGCTTACTATGTCTGAAGAATATTTTTC  549

seq1  ACTCATTGTTAAGTGTCTGTAAGTTTAGAAAGAATTATAAATCACACATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTGTTAAGTGTCTGTAAGTTTAGAAAGAATTATAAATCACACATG  599

seq1  TGTCTACCTTTCACAAACTAGTGTTTAGCTAGACCAGTTTGTTCACAATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACCTTTCACAAACTAGTGTTTAGCTAGACCAGTTTGTTCACAATG  649

seq1  GTGTCTGGAGCTCTCTGTACTTACACTCACAGAATTTAAAAGACAAAACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGGAGCTCTCTGTACTTACACTCACAGAATTTAAAAGACAAAACC  699

seq1  AATTATTGAAAGTTTAGATGTTTCATAATCTCTTTGAAGACCATATGGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGAAAGTTTAGATGTTTCATAATCTCTTTGAAGACCATATGGGT  749

seq1  TTTCACTTCAAATAACTTTCTACCTTGCAGTCTTTCTACATAGCCAGGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTCAAATAACTTTCTACCTTGCAGTCTTTCTACATAGCCAGGTG  799

seq1  TTGAGTTGAAATGGACAGCGAGGAAGGGAAGCCTTTAAGCACCAGTTCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTGAAATGGACAGCGAGGAAGGGAAGCCTTTAAGCACCAGTTCTC  849

seq1  TGGCTCAGGGTCCCTGCCTGACAGCCAGTAAGAAGCGTTGAGCATCAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGGGTCCCTGCCTGACAGCCAGTAAGAAGCGTTGAGCATCAGAA  899

seq1  TGTTGAGGTCTTGTTGATGCCCACAGTGTTTCTTTGTGGGGTGCTCTATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGGTCTTGTTGATGCCCACAGTGTTTCTTTGTGGGGTGCTCTATA  949

seq1  TTTGTGAGGTTCATGGCTACGAGTGCAGCAGCCAGCTGGGCTGAGGACAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAGGTTCATGGCTACGAGTGCAGCAGCCAGCTGGGCTGAGGACAG  999

seq1  GTTTCCTTTCCTTCTGCCTTCCTTCACCAAGGGACATTGATCTGGATTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTTCCTTCTGCCTTCCTTCACCAAGGGACATTGATCTGGATTGT  1049

seq1  GTGGAATTC  1058
      |||||||||
seq2  GTGGAATTC  1058