BAC Information

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BAC

Clone NameB6Ng01-110M10
Chromosome11 (Build37)
Map Location 47,400,041 - 47,401,240
singlet/doubletsinglet
Overlap genenone
Upstream geneBC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd, LOC628753
Downstream geneLOC100039647, LOC192895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110M10.bB6Ng01-110M10.g
ACCDH917304DH917305
length1,1241,186
definitionDH917304|Mus musculus domesticus DNA, BAC clone: B6Ng01-110M10, 5' end.DH917305|Mus musculus domesticus DNA, BAC clone: B6Ng01-110M10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactgtttacctctgtaccccatttttattgggttgcttggtttg
ttaaagtctaacttcttgatttctttaaatattgtgaatattagcactct
gacaggtgtagagttaaggaagatcttttcccaatctggaagtggctgtt
ttgtcctattgatagcattctttgccttacagaaacttttcagtttcata
aagtcccatttatcaattgttgatcttggagccggagccatttgcattct
gttcaggaaattgtctcccataccaatcttttcaaggctatttcccactt
tttcttttattagatttactgtatatggttttgaggtctttgatctactt
ggacttgagttttgtgtaaattgataaatatggatttatttgcattcttc
tacatgcagacatccatttaggccagcaccatttattgaagatagcttat
ttttttcattgtatgattttagcttcgttgtcaaaaataaagtatacatg
ggtgtgtggacttatttctggatctttgattcaattccattgaccaagtt
gtctgtttctgtaccaaaatacaatgcagtttttattactattgctctgt
agtacagcttgagatcagggatggtgattcctctacatggttattttatt
attcgggattgttttggttaccctgtttttttaattttttttcttttttg
tttgtttggtttttttttttttggtactttcttcattcacatctccagtg
ctatcccaaaagaccccccaccccaccccccactcctacttcctggccct
ggcgttcccctgcactgaggcatataaagtctgcacgaccaatgggcctc
tctttccactgatggcctcatacaatgaattaggtagtgtccttctgtcc
tatttgtggaatagtttgcttcctttgttctaagctttaagtgtgctatg
agttgctagtatgaaatctctccattcttattaaagcacctagtcttgga
tttctctagcactggttacattggtccaatagttcgtatgtgtccttcat
ttccatgaactaaaaggttaatccttctattcttccctgaatcaatgaat
tgttgaagaaagaggtggtcaatt
gaattcagcagggctcatcataggaatcgtgtaaataaaatttgagttcc
aatactttgcaatcactagtaaaatagacctccatgataattaacaatgt
gtgctaacattactaaacagagataaattactgagtccttctgatgaaag
tgatacttcacctatgaagctggtgatgaaaccaggaagtagaaatcggc
gaggtgggataggaaaaataatcccaaagaaaagtgaccaatctccactt
tgctaaaatcaggaaatgaccctgtttgaggccagaaacacccaaattgt
ccaaactaaaagtgtcatggcttccaccatgtcaagaggctagagatgcc
agaaagaggggcggggtctggcttccccatatcacttttctcctaaagga
ctacctcatttcaggaggccattttgagggcatgctgaaactcaggagca
cctggaaatgagaattagaccctccctccacacatacacacacactccct
cccttcttgcatccactagagtccctagcttcccagcattggggttcagt
ggtatcccattcccaaggactcctgctgctgtacagaggttctacctttt
ctttcttgtaaacaccctataataaaatactttttctaaaaatcattttt
gtgttgtctgcaaattttattccttgaagttataagaaccccaaaggcac
ttgggcttaaggtggttttggtggccataaattttcaggaccctagctcc
atgaggtcaacacaacaataggcaagaaaggtttcatggcttgcaaggaa
aagcttccataccattccctagaggaagacaaacaagctgaatcaattca
agctgtcagctataaatctctgtttcctaagagtcctggtcacagggatc
acactatgtatgagccatagagatgaattaagttatatcagaccacagac
tttctgtagcacaaacaagctctctcactctatagagaagtctatggaaa
ataatgaacaggtaagactgtggcataaaagttactagaaccctgtagtc
atagtgagtgtgtggccacatattgtgagtggtgtgcatgtggtgtcttt
gtgcatgtgtgctagcatgttgtgaaccatggtaggcatggggtctaggt
aactgttaaacattctgcagttatgcaggtcatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_47400041_47401240
seq2: B6Ng01-110M10.g_69_1254

seq1  GAATTCAGCAGGGCTCATCATAGGAATCGTGTAAATAAAATTTGAGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGGGCTCATCATAGGAATCGTGTAAATAAAATTTGAGTTCC  50

seq1  AATACTTTGCAATCACTAGTAAAATAGACCTCCATGATAATTAACAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTGCAATCACTAGTAAAATAGACCTCCATGATAATTAACAATGT  100

seq1  GTGCTAACATTACTAAACAGAGATAAATTACTGAGTCCTTCTGATGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAACATTACTAAACAGAGATAAATTACTGAGTCCTTCTGATGAAAG  150

seq1  TGATACTTCACCTATGAAGCTGGTGATGAAACCAGGAAGTAGAAATCGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTTCACCTATGAAGCTGGTGATGAAACCAGGAAGTAGAAATCGGC  200

seq1  GAGGTGGGATAGGAAAAATAATCCCAAAGAAAAGTGACCAATCTCCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGGATAGGAAAAATAATCCCAAAGAAAAGTGACCAATCTCCACTT  250

seq1  TGCTAAAATCAGGAAATGACCCTGTTTGAGGCCAGAAACACCCAAATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAATCAGGAAATGACCCTGTTTGAGGCCAGAAACACCCAAATTGT  300

seq1  CCAAACTAAAAGTGTCATGGCTTCCACCATGTCAAGAGGCTAGAGATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTAAAAGTGTCATGGCTTCCACCATGTCAAGAGGCTAGAGATGCC  350

seq1  AGAAAGAGGGGCGGGGTCTGGCTTCCCCATATCACTTTTCTCCTAAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGGGGCGGGGTCTGGCTTCCCCATATCACTTTTCTCCTAAAGGA  400

seq1  CTACCTCATTTCAGGAGGCCATTTTGAGGGCATGCTGAAACTCAGGAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCATTTCAGGAGGCCATTTTGAGGGCATGCTGAAACTCAGGAGCA  450

seq1  CCTGGAAATGAGAATTAGACCCTCCCTCCACACATACACACACACTCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAATGAGAATTAGACCCTCCCTCCACACATACACACACACTCCCT  500

seq1  CCCTTCTTGCATCCACTAGAGTCCCTAGCTTCCCAGCATTGGGGTTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTTGCATCCACTAGAGTCCCTAGCTTCCCAGCATTGGGGTTCAGT  550

seq1  GGTATCCCATTCCCAAGGACTCCTGCTGCTGTACAGAGGTTCTACCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCCCATTCCCAAGGACTCCTGCTGCTGTACAGAGGTTCTACCTTTT  600

seq1  CTTTCTTGTAAACACCCTATAATAAAATACTTTTTCTAAAAATCATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGTAAACACCCTATAATAAAATACTTTTTCTAAAAATCATTTTT  650

seq1  GTGTTGTCTGCAAATTTTATTCCTTGAAGTTATAAGAACCCCAAAGGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTCTGCAAATTTTATTCCTTGAAGTTATAAGAACCCCAAAGGCAC  700

seq1  TTGGGCTTAAGGTGGTTTTGGTGGCCATAAATTTTCAGGACCCTAGCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTTAAGGTGGTTTTGGTGGCCATAAATTTTCAGGACCCTAGCTCC  750

seq1  ATGAGGTCAACACAACAATAGGCAAGAAAGGTTTCATGGCTTGCAAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTCAACACAACAATAGGCAAGAAAGGTTTCATGGCTTGCAAGGAA  800

seq1  AAGCTTCCATACCATTCCCTAGAGGAAGACAAACAAGCTGAATCAATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCCATACCATTCCCTAGAGGAAGACAAACAAGCTGAATCAATTCA  850

seq1  AGCTGTCAGCTATAAATCTCTGTTTCCTAAGAGTCCTGGTCACAGGGATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCAGCTATAAATCTCTGTTTCCTAAGAGTCCTGGTCACAGGGATC  900

seq1  ACACTATGTATGAAGCCATAGAGATGAAATAAGTTATATCAGACCACAAG  950
      |||||||||||| ||||||||||||||| |||||||||||||||||| ||
seq2  ACACTATGTATG-AGCCATAGAGATGAATTAAGTTATATCAGACCAC-AG  948

seq1  ACTTTCTGTAGCACAAACAAGCTCTCTCACTCTTATAGAGAAGTTCTATG  1000
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  ACTTTCTGTAGCACAAACAAGCTCTCTCACTC-TATAGAGAAG-TCTATG  996

seq1  GAATATAATGAACAGGTAAGGAACCTGTGGCATAAAAGGTTTACTAG-AC  1049
      ||| ||||||||||||||||    ||||||||||||||  ||||||| ||
seq2  GAAAATAATGAACAGGTAAG---ACTGTGGCATAAAAG--TTACTAGAAC  1041

seq1  CCTGTAGTCAATTAGTGAGTGTGTG--CACATA-TGTGAGTGTGTGTGCA  1096
      ||||||||||  |||||||||||||  |||||| |||||||| |||||||
seq2  CCTGTAGTCA--TAGTGAGTGTGTGGCCACATATTGTGAGTG-GTGTGCA  1088

seq1  TGTGTGTGTCTTTGTGCATGTGTGTATGCATG-TGTG-AGCATGGTAGGC  1144
      |||| |||||||||||||||||||   ||||| |||| | ||||||||||
seq2  TGTG-GTGTCTTTGTGCATGTGTGCTAGCATGTTGTGAACCATGGTAGGC  1137

seq1  ATGGGGTAGTAGGTTACATGTATAAACATTCTTGCATGTAAATGCAGGTA  1194
      |||||||  ||||| || ||| ||||||||| ||||  |  |||||||| 
seq2  ATGGGGT-CTAGGTAAC-TGT-TAAACATTC-TGCAGTT--ATGCAGGT-  1180

seq1  CATACT  1200
      ||||||
seq2  CATACT  1186