BAC Information

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BAC

Clone NameB6Ng01-111F17
Chromosome11 (Build37)
Map Location 53,057,151 - 53,207,868
singlet/doubletdoublet
Overlap geneHspa4, Zcchc10, Aff4, LOC100040576
Upstream geneSkp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4, LOC623205
Downstream geneLeap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111F17.bB6Ng01-111F17.g
ACCDH917722DH917723
length1,1871,052
definitionDH917722|Mus musculus domesticus DNA, BAC clone: B6Ng01-111F17, 5' end.DH917723|Mus musculus domesticus DNA, BAC clone: B6Ng01-111F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,206,698 - 53,207,868)(53,057,151 - 53,058,216)
sequence
gaattctctcagcccttatgatttaataatggcggctcaatgaacctgtt
tacatatgtgagtatgtcaaagcctttaccacactgttccaggtccagca
tatgttctagtttcctcagcaactgaagtggtatgtccatggtatacttg
gtatatacagaagacatgtattattagtttttgcacacagatatgataaa
aggaatatatgagtttctcagaagtagtgtatttctttctcagtcctcct
tttgttacatgaagaggctattagactggggttaactctgtggtctgtgg
ctatggcacaggaagccacacagtggctactcctttggcacttgctctaa
ccactgtgttaacctgtgatcttaggaggtcatgtgctcactctccagat
gtaatttattaacatctaacagcctaccccaactatgaaacgtttctgat
tctacctacaaaatataataaaaataggaaatcttaaagatagtataaac
aatgttgtttagtgtacagcactcagtaactaaatggaaggattactaag
aagaatactatgtttaacacggtttctttattaaatgtaaactgtgaact
caaaagggtgggtgaacctaggccactaatgttttttcttttccttttgt
tttttgagaggcttgttgttttggaaaaagagtattactatacatagccc
agattggtccaacttgctttgtatgtagctctggctggctttaaactaat
agtaatcctcctgactcagccttctgagtgctaggattaaagacatttta
ttttccatagccagtattctactgctgttttgtaaagaaaatattagcag
actggaagatatttgttcagtagtatgatactttgcctaacatgtacaga
tcctggtgtttcaatctctatcaccatcaaatgagagaaaactggaggaa
taacaacaggtgctatatatatctgacacttggggaggcagaagcaagga
ggatcaggctcaactcatctttgactacagtgggtggagtttgaggacag
gcccagactacatggagacctcagtccaagtttcaaaggaaaaaaacaat
aaatttaggttttttagttctatacaggctttattatttaatggtactag
ggagtgaagtattttaggacaagggctatatggtctt
gaattctgcctgtgaaacgctgagggtccctgccccctagctggttctga
ttggcaaataaagtcgctggcagccgatggctgggcagagagacacaagg
cagaactttaggattctcgggcaaggggactgaggaagaagcagaattac
catgccacaaaagggataacatccacttgagagtggcaggaagagaagca
tactaatcgtgtaagagtcagggaagagcggccccagggagcccccctaa
ttgggtctagggtagcaagaatgggatatagattttagtaaataataact
caggagtattgaaagagagatgttagcaacatggaagtttgggagcggcc
cagctattgagccgtttaaggcatactaaggctgagtatgcatgtctttc
atttgagagtccagaactttggagtgggtagcaaggaactcgaactgccg
ctgccaggtgagttgagcagattaaccaactacagctacagagttaccca
gagcctctcagacaactgggcttggaagtgcagtcttagaggggtcttcg
ctgagaacccagaaccatcccacactcccaagctagtaactgttcaagac
tcctgacaacctggtgccaacctccccagccatacctggacaatacaccc
tacagaccccagccttgtgctgccttaacaagctgcaggtttcctacctg
tcttagtcagggttctattgctgtgaaggggcaccattgccaagtcaact
cttataaaggtaaacatgtaattgggcaggcttacagtttcagaggctta
gtccattatcattgtggtgggaagcatggcggcacacaggcagactggag
gaggagctgagagctgtgcatcttgaacctaaggcagcaggatgagtcta
gattgatactgggtgaagcttgagcataggagactttaagtgaccacttc
ctccaataaagccacacctcctcatagtgctacccaatatggctaagcat
tcaacacatgagtctgtgggggcacgtatcaaaccacacacctcccttgc
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_53206698_53207868
seq2: B6Ng01-111F17.b_48_1234 (reverse)

seq1  AAGACCATATAGCCTCTGTCCT-AAATAC-TCACTTC----TATCATATA  44
      ||||||||||||||  |||||| |||||| ||||| |    || |||  |
seq2  AAGACCATATAGCCCTTGTCCTAAAATACTTCACTCCCTAGTACCATTAA  50

seq1  AT-ATAAAAGCTGTATAG-ACTAAAAACACTAATTTTATTGTTTTTTTCT  92
      || |||||  |||||||| ||||||||  |||| ||||||||||||||| 
seq2  ATAATAAAGCCTGTATAGAACTAAAAAACCTAAATTTATTGTTTTTTTCC  100

seq1  TTTGAAACTGTGACTGA-GTCT-CATGTAGTCTGGG-CTGTCCTCAAACT  139
      |||||||||  |||||| |||| ||||||||||||| |||||||||||||
seq2  TTTGAAACTTGGACTGAGGTCTCCATGTAGTCTGGGCCTGTCCTCAAACT  150

seq1  -CACCACTTGTAGTCAAAGATGAGTTGAGCTTGATCCT-CTTGCTTCTGC  187
       ||||   |||||||||||||||||||||| ||||||| |||||||||||
seq2  CCACCCACTGTAGTCAAAGATGAGTTGAGCCTGATCCTCCTTGCTTCTGC  200

seq1  CT-CCCAAGTGTTCAGATTATATATAGGCACCTGTTGTTATTCCT-CAGT  235
      || |||||||| ||||| |||||||| |||||||||||||||||| ||||
seq2  CTCCCCAAGTG-TCAGA-TATATATA-GCACCTGTTGTTATTCCTCCAGT  247

seq1  TTTCTCTCCTTTTTGATGGTGATAGAGATTG-AACA-CAGGATCTTGTAC  283
      ||||||||   |||||||||||||||||||| |||| ||||||| |||||
seq2  TTTCTCTC--ATTTGATGGTGATAGAGATTGAAACACCAGGATC-TGTAC  294

seq1  ATGTTAGGC-AAGTATCATACTACTGAAC-AATATC-TCCAGTCTGCTAA  330
      ||||||||| ||||||||||||||||||| |||||| |||||||||||||
seq2  ATGTTAGGCAAAGTATCATACTACTGAACAAATATCTTCCAGTCTGCTAA  344

seq1  TATTTTCTTTACAAAACAGCAGTAGAATACTGGCTATGGAAA--TAAATG  378
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  TATTTTCTTTACAAAACAGCAGTAGAATACTGGCTATGGAAAATAAAATG  394

seq1  TCTTTAATCCTAGCACTCAGAAGGCTGAGTCAGGAGGATTACTATTAGTT  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATCCTAGCACTCAGAAGGCTGAGTCAGGAGGATTACTATTAGTT  444

seq1  TAAAGCCAGCCAGAGCTACATACAAAGCAAGTTGGACCAATCTGGGCTAT  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCAGCCAGAGCTACATACAAAGCAAGTTGGACCAATCTGGGCTAT  494

seq1  GTATAGTAATACTCTTTTTCCAAAACAACAAGCCTCTCAAAAAACAAAAG  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTAATACTCTTTTTCCAAAACAACAAGCCTCTCAAAAAACAAAAG  544

seq1  GAAAAGAAAAAACATTAGTGGCCTAGGTTCACCCACCCTTTTGAGTTCAC  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAAAACATTAGTGGCCTAGGTTCACCCACCCTTTTGAGTTCAC  594

seq1  AGTTTACATTTAATAAAGAAACCGTGTTAAACATAGTATTCTTCTTAGTA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACATTTAATAAAGAAACCGTGTTAAACATAGTATTCTTCTTAGTA  644

seq1  ATCCTTCCATTTAGTTACTGAGTGCTGTACACTAAACAACATTGTTTATA  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCCATTTAGTTACTGAGTGCTGTACACTAAACAACATTGTTTATA  694

seq1  CTATCTTTAAGATTTCCTATTTTTATTATATTTTGTAGGTAGAATCAGAA  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTTAAGATTTCCTATTTTTATTATATTTTGTAGGTAGAATCAGAA  744

seq1  ACGTTTCATAGTTGGGGTAGGCTGTTAGATGTTAATAAATTACATCTGGA  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTCATAGTTGGGGTAGGCTGTTAGATGTTAATAAATTACATCTGGA  794

seq1  GAGTGAGCACATGACCTCCTAAGATCACAGGTTAACACAGTGGTTAGAGC  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGCACATGACCTCCTAAGATCACAGGTTAACACAGTGGTTAGAGC  844

seq1  AAGTGCCAAAGGAGTAGCCACTGTGTGGCTTCCTGTGCCATAGCCACAGA  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCAAAGGAGTAGCCACTGTGTGGCTTCCTGTGCCATAGCCACAGA  894

seq1  CCACAGAGTTAACCCCAGTCTAATAGCCTCTTCATGTAACAAAAGGAGGA  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGTTAACCCCAGTCTAATAGCCTCTTCATGTAACAAAAGGAGGA  944

seq1  CTGAGAAAGAAATACACTACTTCTGAGAAACTCATATATTCCTTTTATCA  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAGAAATACACTACTTCTGAGAAACTCATATATTCCTTTTATCA  994

seq1  TATCTGTGTGCAAAAACTAATAATACATGTCTTCTGTATATACCAAGTAT  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGTGCAAAAACTAATAATACATGTCTTCTGTATATACCAAGTAT  1044

seq1  ACCATGGACATACCACTTCAGTTGCTGAGGAAACTAGAACATATGCTGGA  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGACATACCACTTCAGTTGCTGAGGAAACTAGAACATATGCTGGA  1094

seq1  CCTGGAACAGTGTGGTAAAGGCTTTGACATACTCACATATGTAAACAGGT  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACAGTGTGGTAAAGGCTTTGACATACTCACATATGTAAACAGGT  1144

seq1  TCATTGAGCCGCCATTATTAAATCATAAGGGCTGAGAGAATTC  1171
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAGCCGCCATTATTAAATCATAAGGGCTGAGAGAATTC  1187

seq1: chr11_53057151_53058216
seq2: B6Ng01-111F17.g_69_1120

seq1  GAATTCTGCCTGTGAAACGCTGAGGGTCCCTGCCCCCTAGCTGGTTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTGTGAAACGCTGAGGGTCCCTGCCCCCTAGCTGGTTCTGA  50

seq1  TTGGCAAATAAAGTCGCTGGCAGCCGATGGCTGGGCAGAGAGACACAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAATAAAGTCGCTGGCAGCCGATGGCTGGGCAGAGAGACACAAGG  100

seq1  CAGAACTTTAGGATTCTCGGGCAAGGGGACTGAGGAAGAAGCAGAATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTTTAGGATTCTCGGGCAAGGGGACTGAGGAAGAAGCAGAATTAC  150

seq1  CATGCCACAAAAGGGATAACATCCACTTGAGAGTGGCAGGAAGAGAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCACAAAAGGGATAACATCCACTTGAGAGTGGCAGGAAGAGAAGCA  200

seq1  TACTAATCGTGTAAGAGTCAGGGAAGAGCGGCCCCAGGGAGCCCCCCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATCGTGTAAGAGTCAGGGAAGAGCGGCCCCAGGGAGCCCCCCTAA  250

seq1  TTGGGTCTAGGGTAGCAAGAATGGGATATAGATTTTAGTAAATAATAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCTAGGGTAGCAAGAATGGGATATAGATTTTAGTAAATAATAACT  300

seq1  CAGGAGTATTGAAAGAGAGATGTTAGCAACATGGAAGTTTGGGAGCGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTATTGAAAGAGAGATGTTAGCAACATGGAAGTTTGGGAGCGGCC  350

seq1  CAGCTATTGAGCCGTTTAAGGCATACTAAGGCTGAGTATGCATGTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTGAGCCGTTTAAGGCATACTAAGGCTGAGTATGCATGTCTTTC  400

seq1  ATTTGAGAGTCCAGAACTTTGGAGTGGGTAGCAAGGAACTCGAACTGCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGAGTCCAGAACTTTGGAGTGGGTAGCAAGGAACTCGAACTGCCG  450

seq1  CTGCCAGGTGAGTTGAGCAGATTAACCAACTACAGCTACAGAGTTACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGGTGAGTTGAGCAGATTAACCAACTACAGCTACAGAGTTACCCA  500

seq1  GAGCCTCTCAGACAACTGGGCTTGGAAGTGCAGTCTTAGAGGGGTCTTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCTCAGACAACTGGGCTTGGAAGTGCAGTCTTAGAGGGGTCTTCG  550

seq1  CTGAGAACCCAGAACCATCCCACACTCCCAAGCTAGTAACTGTTCAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACCCAGAACCATCCCACACTCCCAAGCTAGTAACTGTTCAAGAC  600

seq1  TCCTGACAACCTGGTGCCAACCTCCCCAGCCATACCTGGACAATACACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACAACCTGGTGCCAACCTCCCCAGCCATACCTGGACAATACACCC  650

seq1  TACAGACCCCAGCCTTGTGCTGCCTTAACAAGCTGCAGGTTTCCTACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACCCCAGCCTTGTGCTGCCTTAACAAGCTGCAGGTTTCCTACCTG  700

seq1  TCTTAGTCAGGGTTCTATTGCTGTGAAGGGGCACCATTGCCAAGTCAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTCAGGGTTCTATTGCTGTGAAGGGGCACCATTGCCAAGTCAACT  750

seq1  CTTATAAAGGTAAACATGTAATTGGGGCAGGCTTACAGTTTCAGAGGCTT  800
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTATAAAGGTAAACATGTAATT-GGGCAGGCTTACAGTTTCAGAGGCTT  799

seq1  AGTCCATTATCATTGTGGTGGGAAGCATGGCGGCACACAGGCAGACTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATTATCATTGTGGTGGGAAGCATGGCGGCACACAGGCAGACTGGA  849

seq1  GGAGGAGCTGAGAGCTGTGCATCTTGAACCTAAGGCAGGCAGGATGAGTC  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGAGGAGCTGAGAGCTGTGCATCTTGAACCTAAGGCA-GCAGGATGAGTC  898

seq1  TAGATTTTGATACTGGGTGAAGCTTGAGCATAGGAGACTTTAAAGTGACA  950
      ||||  ||||||||||||||||||||||||||||||||||| ||||||| 
seq2  TAGA--TTGATACTGGGTGAAGCTTGAGCATAGGAGACTTT-AAGTGAC-  944

seq1  CACTTCCTCCAATAAAGCCACACCTCCTCATAGTGCTACCCCATATGGGC  1000
      ||||||||||||||||||||||||||||||||||||||||| |||| |||
seq2  CACTTCCTCCAATAAAGCCACACCTCCTCATAGTGCTACCCAATAT-GGC  993

seq1  TAAGCATTCAAACACATGAGTCTGTGGGGGGCCAAACGTATTCAAACCAC  1050
      ||||||||| ||||||||||||||||||||     ||||| |||||||| 
seq2  TAAGCATTC-AACACATGAGTCTGTGGGGG----CACGTA-TCAAACCA-  1036

seq1  CACA-CTCCCTCTGCAT  1066
      |||| |||||| |||||
seq2  CACACCTCCCT-TGCAT  1052