MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-111M19
Chromosome	4 (Build37)	11 (Build37)
Map Location	105,176,158 - 105,177,029	79,058,319 - 79,059,261
singlet/doublet	singlet	singlet
Overlap gene	none
Upstream gene	Dab1, C8b, C8a, 1700024P16Rik, Prkaa2, LOC100039513, Ppap2b, LOC433742
Downstream gene	LOC665518, LOC434381, Ppia-ps4_954.1, Map1lc3, LOC384039, Usp24, LOC100039616, Pcsk9, Bsnd, Tmem61
Link	Open Mouse BAC browser

Click to get alignment info.

name	Dab1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13131 MGI:108554
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	C8b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110382 MGI:88236
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C8a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230558 MGI:2668347
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700024P16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242594 MGI:2685466
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 1 Protein

name	Prkaa2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108079 MGI:1336173
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039513 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039513
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Ppap2b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67916 MGI:1915166
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC433742 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433742
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 39 ESTs, 13 Proteins pseudo : _no_value

name	LOC665518 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665518
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC434381 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:434381
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 20 mRNAs, 651 ESTs pseudo : _no_value

name	Ppia-ps4_954.1 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:269569
definition	note : peptidyl-prolyl cis-trans isomerase A pseudogene 4_954.1 pseudo : _no_value

name	Map1lc3 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:384038
definition	note : similar to microtubule-associated protein 1 light chain 3 beta pseudo : _no_value

name	LOC384039 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:384039
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 15 Proteins pseudo : _no_value

name	Usp24 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329908 MGI:1919936
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 166 ESTs, 2 Proteins

name	LOC100039616 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039616
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 100 ESTs, 1 Protein

name	Pcsk9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100102 MGI:2140260
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bsnd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:140475 MGI:2153465
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem61 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329909 MGI:3041156
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 1 Protein

name	Dab1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70909365 GeneID:13131 MGI:108554
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : disabled homolog 1 (Drosophila) transcript_id : NM_010014.2

name	Dab1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70909360 GeneID:13131 MGI:108554
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : disabled homolog 1 (Drosophila) transcript_id : NM_177259.3

name	C8b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381481 GeneID:110382 MGI:88236
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : complement component 8, beta subunit transcript_id : NM_133882.2

name	C8a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22122666 GeneID:230558 MGI:2668347
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : complement component 8, alpha polypeptide transcript_id : NM_146148.1

name	1700024P16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94372162 GeneID:242594 MGI:2685466
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 1 Protein product : RIKEN cDNA 1700024P16 gene transcript_id : XM_161350.7

name	Prkaa2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:54792085 GeneID:108079 MGI:1336173
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase, AMP-activated, alpha 2 catalytic subunit transcript_id : NM_178143.1

name	LOC100039513 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252809 GeneID:100039513
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : hypothetical protein LOC100039513 transcript_id : XM_001473391.1

name	Ppap2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:86262159 GeneID:67916 MGI:1915166
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidic acid phosphatase type 2B transcript_id : NM_080555.2

name	Usp24 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149252835 GeneID:329908 MGI:1919936
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 166 ESTs, 2 Proteins product : ubiquitin specific peptidase 24 transcript_id : XM_001481281.1

name	LOC100039616 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252812 GeneID:100039616
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 100 ESTs, 1 Protein product : similar to Usp24 protein transcript_id : XM_001473472.1

name	Pcsk9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956351 GeneID:100102 MGI:2140260
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : proprotein convertase subtilisin/kexin type 9 transcript_id : NM_153565.1

name	Bsnd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:91598893 GeneID:140475 MGI:2153465
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Bartter syndrome, infantile, with sensorineural deafness (Barttin) transcript_id : NM_080458.2

name	Tmem61 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149252837 GeneID:329909 MGI:3041156
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 1 Protein product : transmembrane protein 61 transcript_id : XM_001474114.1

name	Dab1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70909361 CCDS:CCDS18413.1 GeneID:13131 MGI:108554
definition	GO_component : GO:0005622 - intracellular [Evidence TAS] GO_function : GO:0005543 - phospholipid binding [Evidence TAS]; GO:0005515 - protein binding [Evidence IPI]; GO:0042169 - SH2 domain binding [Evidence TAS] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007417 - central nervous system development [Evidence TAS]; GO:0007275 - development [Evidence IEA]; GO:0007162 - negative regulation of cell adhesion [Evidence IMP]; GO:0007399 - nervous system development [Evidence IEA]; GO:0001764 - neuron migration [Evidence IMP]; GO:0045860 - positive regulation of protein kinase activity [Evidence IGI]; GO:0007243 - protein kinase cascade [Evidence TAS]; GO:0007264 - small GTPase mediated signal transduction [Evidence IMP] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; yotari product : disabled homolog 1 isoform 2 protein_id : NP_796233.2

name	Dab1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753596 GeneID:13131 MGI:108554
definition	GO_component : GO:0005622 - intracellular [Evidence TAS] GO_function : GO:0005543 - phospholipid binding [Evidence TAS]; GO:0005515 - protein binding [Evidence IPI]; GO:0042169 - SH2 domain binding [Evidence TAS] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007417 - central nervous system development [Evidence TAS]; GO:0007275 - development [Evidence IEA]; GO:0007162 - negative regulation of cell adhesion [Evidence IMP]; GO:0007399 - nervous system development [Evidence IEA]; GO:0001764 - neuron migration [Evidence IMP]; GO:0045860 - positive regulation of protein kinase activity [Evidence IGI]; GO:0007243 - protein kinase cascade [Evidence TAS]; GO:0007264 - small GTPase mediated signal transduction [Evidence IMP] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; yotari product : disabled homolog 1 isoform 1 protein_id : NP_034144.1

name	C8b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33563297 CCDS:CCDS18414.1 GeneID:110382 MGI:88236
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_process : GO:0006956 - complement activation [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA] codon_start : 1 product : complement component 8, beta subunit protein_id : NP_598643.1

name	C8a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122667 CCDS:CCDS18415.1 GeneID:230558 MGI:2668347
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005579 - membrane attack complex [Evidence IEA] [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0006956 - complement activation [Evidence ISS]; GO:0006957 - complement activation, alternative pathway [Evidence IEA]; GO:0006958 - complement activation, classical pathway [Evidence IEA]; GO:0019835 - cytolysis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA] codon_start : 1 note : complement component 8 alpha subunit product : complement component 8, alpha polypeptide protein_id : NP_666260.1

name	1700024P16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51709364 GeneID:242594 MGI:2685466
definition	codon_start : 1 product : hypothetical protein protein_id : XP_161350.5

name	Prkaa2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54792086 CCDS:CCDS18416.1 GeneID:108079 MGI:1336173
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0004679 - AMP-activated protein kinase activity [Evidence TAS]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0006950 - response to stress [Evidence TAS] codon_start : 1 exception : mismatches in translation product : AMP-activated protein kinase alpha 2 catalytic subunit protein_id : NP_835279.1

name	LOC100039513 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252810 GeneID:100039513
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473441.1

name	Ppap2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18017590 CCDS:CCDS18417.1 GeneID:67916 MGI:1915166
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0042577 - lipid phosphatase activity [Evidence IMP]; GO:0008195 - phosphatidate phosphatase activity [Evidence IEA] GO_process : GO:0001568 - blood vessel development [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0010003 - gastrulation (sensu Mammalia) [Evidence IMP]; GO:0006644 - phospholipid metabolism [Evidence IMP]; GO:0030111 - regulation of Wnt receptor signaling pathway [Evidence IDA] codon_start : 1 product : phosphatidic acid phosphatase type 2B protein_id : NP_542122.1

name	Usp24 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149252836 GeneID:329908 MGI:1919936
definition	codon_start : 1 exception : unclassified translation discrepancy note : overriding stop codons product : similar to ubiquitin specific protease 24 protein_id : XP_001481331.1 transl_except : (pos:106036879..106036881,aa:OTHER) transl_except : (pos:106036897..106036899,aa:OTHER) transl_except : (pos:106036948..106036950,aa:OTHER) transl_except : (pos:106040711..106040713,aa:OTHER) transl_except : (pos:106041344..106041346,aa:OTHER) transl_except : (pos:106041362..106041364,aa:OTHER) transl_except : (pos:106041374..106041376,aa:OTHER) transl_except : (pos:106041434..106041436,aa:OTHER) transl_except : (pos:106041443..106041445,aa:OTHER) transl_except : (pos:106042678..106042680,aa:OTHER) transl_except : (pos:106042690..106042692,aa:OTHER) transl_except : (pos:106042771..106042773,aa:OTHER) transl_except : (pos:106042795..106042797,aa:OTHER) transl_except : (pos:106043668..106043670,aa:OTHER) transl_except : (pos:106043695..106043697,aa:OTHER) transl_except : (pos:106045326..106045328,aa:OTHER) transl_except : (pos:106045347..106045349,aa:OTHER) transl_except : (pos:106046268..106046270,aa:OTHER) transl_except : (pos:106046286..106046288,aa:OTHER) transl_except : (pos:106046358..106046360,aa:OTHER) transl_except : (pos:106046364..106046366,aa:OTHER) transl_except : (pos:106046385..106046387,aa:OTHER) transl_except : (pos:106046397..106046399,aa:OTHER) transl_except : (pos:106046645..106046647,aa:OTHER) transl_except : (pos:106048283..106048285,aa:OTHER) transl_except : (pos:106048295..106048297,aa:OTHER) transl_except : (pos:106048340..106048342,aa:OTHER) transl_except : (pos:106049948..106049950,aa:OTHER) transl_except : (pos:106049951..106049953,aa:OTHER) transl_except : (pos:106049987..106049989,aa:OTHER) transl_except : (pos:106049996..106049998,aa:OTHER) transl_except : (pos:106050175..106050177,aa:OTHER) transl_except : (pos:106050220..106050222,aa:OTHER) transl_except : (pos:106051663..106051665,aa:OTHER) transl_except : (pos:106051684..106051686,aa:OTHER) transl_except : (pos:106051835..106051837,aa:OTHER) transl_except : (pos:106051841..106051843,aa:OTHER) transl_except : (pos:106051901..106051903,aa:OTHER) transl_except : (pos:106052696..106052698,aa:OTHER) transl_except : (pos:106053035..106053037,aa:OTHER) transl_except : (pos:106053065..106053067,aa:OTHER) transl_except : (pos:106053116..106053118,aa:OTHER) transl_except : (pos:106058032..106058034,aa:OTHER) transl_except : (pos:106058122..106058124,aa:OTHER) transl_except : (pos:106060092..106060094,aa:OTHER) transl_except : (pos:106060330..106060332,aa:OTHER) transl_except : (pos:106060357..106060359,aa:OTHER) transl_except : (pos:106061137..106061139,aa:OTHER) transl_except : (pos:106061149..106061151,aa:OTHER) transl_except : (pos:106062891..106062893,aa:OTHER) transl_except : (pos:106069865..106069867,aa:OTHER) transl_except : (pos:106069916..106069918,aa:OTHER) transl_except : (pos:106071702..106071704,aa:OTHER) transl_except : (pos:106071711..106071713,aa:OTHER) transl_except : (pos:106073594..106073596,aa:OTHER) transl_except : (pos:106074654..106074656,aa:OTHER) transl_except : (pos:106074669..106074671,aa:OTHER) transl_except : (pos:106074705..106074707,aa:OTHER) transl_except : (pos:106076540..106076542,aa:OTHER) transl_except : (pos:106076573..106076575,aa:OTHER) transl_except : (pos:106076579..106076581,aa:OTHER) transl_except : (pos:106079042..106079044,aa:OTHER) transl_except : (pos:106079069..106079071,aa:OTHER) transl_except : (pos:106079697..106079699,aa:OTHER) transl_except : (pos:106080573..106080575,aa:OTHER) transl_except : (pos:106081924..106081926,aa:OTHER) transl_except : (pos:106081987..106081989,aa:OTHER) transl_except : (pos:106082220..106082222,aa:OTHER) transl_except : (pos:106082226..106082228,aa:OTHER) transl_except : (pos:106082265..106082267,aa:OTHER) transl_except : (pos:106082274..106082276,aa:OTHER) transl_except : (pos:106082277..106082279,aa:OTHER) transl_except : (pos:106082750..106082752,aa:OTHER) transl_except : (pos:106083448..106083450,aa:OTHER) transl_except : (pos:106084010..106084012,aa:OTHER) transl_except : (pos:106084019..106084021,aa:OTHER) transl_except : (pos:106084777..106084779,aa:OTHER) transl_except : (pos:106086212..106086214,aa:OTHER) transl_except : (pos:106086263..106086265,aa:OTHER) transl_except : (pos:106086272..106086274,aa:OTHER) transl_except : (pos:106086987..106086989,aa:OTHER) transl_except : (pos:106087020..106087022,aa:OTHER) transl_except : (pos:106088683..106088685,aa:OTHER) transl_except : (pos:106090820..106090822,aa:OTHER) transl_except : (pos:106090865..106090867,aa:OTHER) transl_except : (pos:106093040..106093042,aa:OTHER) transl_except : (pos:106093616..106093618,aa:OTHER) transl_except : (pos:106097985..106097987,aa:OTHER) transl_except : (pos:106098027..106098029,aa:OTHER) transl_except : (pos:106101100..106101102,aa:OTHER) transl_except : (pos:106101124..106101126,aa:OTHER) transl_except : (pos:106103152..106103154,aa:OTHER) transl_except : (pos:106103194..106103196,aa:OTHER) transl_except : (pos:106104222..106104224,aa:OTHER) transl_except : (pos:106109357..106109359,aa:OTHER) transl_except : (pos:106109378..106109380,aa:OTHER) transl_except : (pos:106111398..106111400,aa:OTHER) transl_except : (pos:106111401..106111403,aa:OTHER) transl_except : (pos:106111413..106111415,aa:OTHER)

name	LOC100039616 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252813 GeneID:100039616
definition	codon_start : 1 product : similar to Usp24 protein protein_id : XP_001473522.1

name	Pcsk9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956352 CCDS:CCDS18418.1 GeneID:100102 MGI:2140260
definition	GO_component : GO:0005576 - extracellular region [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0042802 - identical protein binding [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO:0004289 - subtilase activity [Evidence IDA] GO_process : GO:0008203 - cholesterol metabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0043086 - negative regulation of enzyme activity [Evidence IEA]; GO:0030182 - neuron differentiation [Evidence IDA]; GO:0006508 - proteolysis [Evidence IEA]; GO:0008202 - steroid metabolism [Evidence IEA] codon_start : 1 note : convertase subtilisin; neural apoptosis regulated convertase 1 product : proprotein convertase subtilisin/kexin type 9 protein_id : NP_705793.1

name	Bsnd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:91598894 CCDS:CCDS18419.1 GeneID:140475 MGI:2153465
definition	GO_component : GO:0016323 - basolateral plasma membrane [Evidence IDA]; GO:0016021 - integral to membrane [Evidence ISS]; GO:0005887 - integral to plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0043234 - protein complex [Evidence IDA] GO_function : GO:0005254 - chloride channel activity [Evidence IDA]; GO:0003674 - molecular_function [Evidence ND]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006873 - cell ion homeostasis [Evidence ISS]; GO:0030644 - chloride ion homeostasis [Evidence NAS]; GO:0030007 - potassium ion homeostasis [Evidence NAS]; GO:0007605 - sensory perception of sound [Evidence NAS] codon_start : 1 note : barttin product : Bartter syndrome, infantile, with sensorineural deafness (Barttin) protein_id : NP_536706.2

name	Tmem61 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149252838 GeneID:329909 MGI:3041156
definition	codon_start : 1 product : similar to Transmembrane protein 61 protein_id : XP_001474164.1

name	LOC665518 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665518
definition	number : 1 pseudo : _no_value

name	LOC433742 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252831 GeneID:433742
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 39 ESTs, 13 Proteins product : similar to ubiquitin-conjugating enzyme UbcH6 pseudo : _no_value transcript_id : XR_031474.1

name	LOC434381 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252811 GeneID:434381
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 20 mRNAs, 651 ESTs product : hypothetical LOC434381 pseudo : _no_value transcript_id : XR_031223.1

name	LOC384039 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252834 GeneID:384039
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 15 Proteins product : similar to Heat shock protein 1 (chaperonin) pseudo : _no_value transcript_id : XR_031555.1

clone name	MSMg01-458I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-190I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105A04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-112B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-171M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-107F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-309O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132H12
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-089N22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-159K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-065A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-049N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-216F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-469E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-107L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167H24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100M09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191O07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311M06
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-111M19.b	B6Ng01-111M19.g
ACC	DH918044	DH918045
length	873	1,000
definition	DH918044\|Mus musculus domesticus DNA, BAC clone: B6Ng01-111M19, 5' end.	DH918045\|Mus musculus domesticus DNA, BAC clone: B6Ng01-111M19, 3' end.
singlet/doublet	singlet	singlet
BLAST hit	unique	unique
Map location.	(105,176,158 - 105,177,029)	(79,058,319 - 79,059,261)
sequence	gaattcctgagcaaacatggcagggggtctatatgaatggattccatgag agaacagggcatggtggatgtaaagactaattccctgagagaacccttca ggggctatgtgaggagaggcaccctcttggaactatagaaatcccacatc aaaaccagaaaggccaaccaaaatgctaataggccaaagtgaagtgatga aaatataaattaaaatgtgacagttggaccaaatgaacaaaatcaaaata tactatgggggttcattctgtagcgatcactagttgatagagcatggcca tttcagtgcccctttggtctgcctcctagtcattagctattttgacaact ttggtcttctttgagtatcataaaaaagcatgttacatggattaggaaac aaactcagaagccaccggcctagtcacgtatcttggagcagccagctgga tcggaagcttatgtctcttgagcagcagctcccagttcctctcagggcat caggctgttatagactaacagttgtataattgtacgatggtctcacctca gtttttccaggaccaagatgcacttgatcttgcttaaatatttatccaac aaaaatttacagttttgcatttcctaaaagagggatgtacgcatttctgt tagcaacagtaaagttgataatagtgatagtctgataatactgtgtccag ctactgcacacaagcatcctacatctaagctggctctgtcaccacaaagt acacatgtttttcagcttcaccatttttcctgattatttttataaaattt ggtagttttattaatttatttagtgggtatctatttcattttacaattcc gatgctatccccaagtcctctac	gaattcaataaatgtggtatggtgtgtgtgtgtgtgtgggtgtgattgtg cttgataaaattacacagggctggagacacacctcagtagtcaagagcac actctgcttgcagaggacctgagtttggtccccagcactttattgctcca tgggaatctaacactctgacctcctcagacacccatacataaccacatgt agacaaacatgaatatagagaactaaaaataatacaatttagaatataaa agccaggcatgctaatgtatacacctttaatctcagtatttaggagataa agacatttgtttctatgaagtaaaatacatcaatacaccacacgtctcag aaagaaactgagtacaccaacatacttttccatgagggttagaggataaa acatctcgtatattttatgaaagaatttatgatctatgcttgccagcatt taaccacattacaaatcctgatttgtaaatcaggctatataatctaaatt ctattgggtgactagatttgttgttttaaataaaattttaaaaatagggc tttttaaaaaagatttatttattatatgtaagtacactgtagctgttttt cagataccccagaagagggcatcagttttcattatagatggttgtgagcc accatgtggttgctgggattttgaattcaggaccttcggcagaacagttc agtgctcttaaattctgagccatctctctagccccaaaataatgtttttg attttaaaattcatgtattttatatgtgagtattattttgctttgcatat atgtctgtgtagcaacctgcatgcagttatccagaggggccaagaggatg ttgaattccttagacctagaagtcataagttctgtgtgggttggtctgag cagtgtcaaactgtttgatatagaaactgctggttctgtttcagcttact tactaagctgggctttgttggatctacataggaaagggaccgagtatata
quality values	Open. Hide. 53 26 35 43 38 31 10 8 22 22 33 17 9 13 11 17 11 35 49 25 25 12 16 16 14 11 7 7 10 17 9 11 16 28 24 27 16 23 36 24 24 35 23 28 15 11 19 24 19 14 37 23 33 19 19 13 13 32 24 11 19 16 15 23 28 36 19 27 12 19 28 13 12 19 12 23 31 18 13 23 19 23 31 36 19 23 26 27 12 20 12 23 13 19 12 27 13 12 15 13 12 38 23 36 23 24 30 32 19 18 19 24 13 27 27 29 37 19 28 12 11 13 19 28 19 30 18 13 23 12 18 13 19 24 19 24 15 12 27 25 31 29 23 23 28 15 23 26 39 20 12 12 36 19 28 24 16 30 28 34 24 25 43 15 25 10 18 24 28 19 23 24 24 28 39 28 28 20 28 28 33 13 36 19 28 24 43 27 19 13 19 23 19 13 25 52 49 32 49 31 28 36 30 23 31 23 33 27 37 31 27 31 18 13 13 12 27 11 13 19 23 30 25 61 61 36 30 31 28 24 21 24 29 36 39 27 19 19 13 18 19 24 24 28 18 19 24 39 23 39 15 32 35 28 35 27 30 39 31 19 19 15 13 13 13 52 33 25 27 35 28 18 13 23 23 38 24 19 13 19 19 19 17 26 24 20 22 18 13 20 23 9 12 11 14 18 24 15 24 19 31 23 27 15 25 20 23 23 12 13 13 18 13 29 27 36 28 19 24 28 43 23 36 33 23 25 16 37 23 30 43 24 43 31 30 35 27 43 34 39 28 39 17 17 21 16 11 28 36 36 28 26 37 19 26 26 24 24 31 34 28 34 34 34 15 17 17 17 21 34 18 16 13 24 31 22 26 18 23 32 35 41 22 22 24 29 34 23 32 25 24 24 17 25 15 15 19 15 15 11 12 14 18 24 27 13 7 9 26 16 10 23 23 13 24 26 19 23 15 24 26 19 10 14 13 15 19 14 20 14 21 15 22 17 24 13 24 12 27 24 22 22 32 13 14 17 24 20 23 20 22 27 17 21 31 35 18 20 17 15 16 17 21 21 35 23 24 28 28 33 22 20 25 19 28 14 24 14 15 24 17 23 16 17 10 21 26 18 15 25 18 23 17 14 7 31 22 17 15 25 33 17 11 35 24 24 28 21 12 24 36 17 9 27 23 14 14 19 15 12 8 10 21 34 17 12 24 14 21 24 24 38 30 24 8 17 28 19 24 19 19 14 23 24 30 21 32 27 34 18 10 19 23 30 12 14 14 12 11 8 13 30 16 18 14 27 11 39 33 14 11 7 20 24 43 20 19 21 14 13 10 16 13 16 9 17 21 10 20 16 28 14 20 38 42 25 26 14 20 17 21 12 32 34 28 57 23 23 22 33 42 24 35 27 23 17 30 24 17 15 13 10 10 16 21 9 9 37 24 12 37 7 30 28 24 17 31 36 19 12 27 20 32 31 32 21 28 14 32 9 30 29 12 30 33 18 15 12 14 16 17 28 28 14 30 18 20 37 33 21 23 14 16 10 10 24 27 15 24 14 5 10 21 17 38 25 32 25 23 15 21 13 24 23 15 12 8 13 21 14 20 24 19 21 18 27 20 13 21 17 18 14 12 30 24 9 31 20 23 24 28 41 37 18 10 5 5 8 6 6 23 31 25 13 32 26 27 30 12 15 14 22 24 11 24 35 34 7 33 29 37 27 35 37 20 13 23 16 14 17 12 25 15 16 10 29 17 27 15 12 33 30 11 9 21 24 8 17 28 16 9 22 30 29 28 16 25 17 29 30 14 7 15 27 31 30 5 13 8 7 10 10 21 11 24 20 18 15 20 21 18 13 14 12 20 12 13 10 14 19 12 16 12 28 21 20 21 28 11 24 6 22 10 14 5 7 8 7 15 12 22 29 7 17 10 5 14 25 10 14 10 17 21 15 29 14 7 18 16 27 29 15 18 24 14 13 14 14 6 14 13 9 7	Open. Hide. 50 61 33 39 9 8 8 10 12 12 9 6 5 7 8 15 13 10 14 14 24 14 12 26 11 19 12 28 18 24 18 28 21 24 17 24 13 41 11 33 20 20 18 16 11 13 17 12 13 11 11 10 30 29 24 13 15 20 18 36 52 59 59 61 59 61 59 59 59 59 59 61 61 59 59 61 61 61 59 61 59 61 52 52 45 43 32 43 52 52 59 59 52 59 52 61 52 59 52 59 59 59 61 61 59 55 59 59 59 61 59 59 37 59 49 59 59 49 59 59 61 59 30 22 23 18 26 23 18 33 49 61 61 59 49 59 59 59 61 61 59 59 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 59 59 59 59 59 59 59 59 59 59 61 59 61 59 61 59 52 59 52 45 61 61 59 61 61 61 59 59 59 59 59 59 59 61 61 61 59 61 59 61 61 61 59 52 61 59 52 59 59 61 59 61 59 55 61 61 61 61 59 59 59 49 59 59 59 59 59 61 59 61 59 61 59 61 61 61 61 61 59 61 61 59 59 38 61 59 59 59 61 61 61 61 61 59 61 61 61 52 52 49 49 59 61 59 59 52 59 61 61 59 59 59 59 61 59 61 59 61 61 59 61 61 61 61 61 61 59 59 61 61 61 61 52 49 45 59 61 43 59 59 52 61 59 59 59 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 59 59 59 59 59 59 59 59 43 61 59 59 52 59 59 59 52 49 59 59 37 52 59 61 59 61 61 52 52 55 52 55 52 61 55 55 55 55 55 55 49 55 52 55 37 55 43 52 52 55 52 61 55 61 61 55 55 61 61 52 55 52 55 55 52 61 52 55 61 55 61 61 61 61 49 49 61 61 61 61 61 61 61 40 61 47 35 55 61 61 61 61 61 61 55 61 61 61 55 55 61 61 61 39 43 55 50 55 55 55 50 55 55 43 35 61 61 61 55 55 55 55 61 61 55 61 61 55 61 61 61 61 61 53 50 53 50 61 53 61 50 47 61 52 61 61 53 43 61 53 61 15 23 10 10 14 23 47 61 61 47 39 52 53 61 50 52 25 61 53 40 61 61 52 43 14 61 61 43 35 61 43 28 53 61 61 61 61 43 53 42 61 61 61 61 61 53 39 31 61 53 53 61 52 52 39 61 61 50 61 61 61 61 14 33 61 61 39 31 47 38 53 30 50 47 38 52 57 53 43 24 31 53 27 50 47 42 39 40 57 53 43 42 52 22 52 45 47 27 36 36 53 50 53 53 47 52 39 53 38 33 30 36 22 35 40 53 57 36 30 20 47 14 16 57 42 47 47 42 50 53 53 8 7 5 7 8 52 35 21 34 42 30 45 40 21 35 13 30 47 28 52 52 28 28 47 21 23 52 42 50 42 26 36 38 20 36 25 21 17 23 23 27 38 45 17 12 6 57 57 41 47 37 52 19 36 30 25 18 31 37 19 22 11 12 24 41 38 23 28 17 36 37 23 30 18 13 14 28 30 22 39 43 37 40 36 29 52 53 39 10 37 35 35 23 23 50 17 28 33 14 29 32 44 50 37 27 38 33 31 30 53 46 33 30 39 39 40 28 25 28 29 53 23 53 57 57 37 28 32 16 52 52 40 18 44 28 25 11 16 33 35 30 28 16 36 31 48 37 11 33 7 24 33 57 22 33 48 19 34 32 20 40 33 12 53 44 53 33 30 24 53 7 26 20 10 12 23 24 25 18 40 23 39 20 32 21 29 9 16 15 21 12 5 39 27 32 37 29 24 36 29 19 26 8 15 13 8 10 17 24 24 9 15 7 48 46 30 18 24 21 16 22 9 5 6 30 19 30 47 19 5 32 26 25 28 25 48 25 29 29 9 25 13 32 29 29 12 18 18 28 31 28 22 16 6 8 9 6 7 16 12 34 17 20 17 30 29 29 29 29 33 30 12 18 21 26 9 6 14 18 18 29 31 26 6 14 14 29 12 28 33 17 21 34 20 5 29 23 11 11 18 7 27 14 24 21 29 25 28 28 36 28 11 17 6 27 6 28 11 29 21 22 33 20 14 24 23 21 26 29 28 43 43 31 9 21 18 28 29 16 13 14 41 20 34 12 20 15 8 16 23 34 13 12 8 5 5 9 9 15 11 36 9 18 41 24 11 7 36 12 24 8 12 7 18 6 20 28

Alignment Information

BAC End 1

BAC End 2

seq1: chr4_105176158_105177029
seq2: B6Ng01-111M19.b_46_918 (reverse)

seq1  GTAGGGGACTTTTGGGATAGCATCGGAAATGT-AAATGAAATAAATACCC  49
      |||| |||| || ||||||||||||||| ||| |||||||||| ||||||
seq2  GTAGAGGAC-TTGGGGATAGCATCGGAATTGTAAAATGAAATAGATACCC  49

seq1  AATAAAAAAATAAATAAAAC-AACATAATTTAAAAAAATAATCAGGAAAA  98
      | |||| |||| |||||||| | || | |||| |||||||||||||||||
seq2  ACTAAATAAATTAATAAAACTACCAAATTTTATAAAAATAATCAGGAAAA  99

seq1  ATGGTGAAGCTGAAAAACATGTGTACCTTGTGGTGACAGAGCCAGCTGGG  148
      |||||||||||||||||||||||||| ||||||||||||||||||||  |
seq2  ATGGTGAAGCTGAAAAACATGTGTACTTTGTGGTGACAGAGCCAGCTTAG  149

seq1  ATGTAGGATGCTTGTGTGCAGTAGCTGGAAACAGTATTATCAGACTATCA  198
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGTAGGATGCTTGTGTGCAGTAGCTGGACACAGTATTATCAGACTATCA  199

seq1  CTATTATCAAC-TTACTGTTGCTAACAGAAATGCCTACATCCCTCTTCTA  247
      ||||||||||| |||||||||||||||||||||| |||||||||||| ||
seq2  CTATTATCAACTTTACTGTTGCTAACAGAAATGCGTACATCCCTCTTTTA  249

seq1  GGAAATGCAAAACTGTAAATTTTTGTTGGATAAATATATAAGCAAGATCA  297
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGAAATGCAAAACTGTAAATTTTTGTTGGATAAATATTTAAGCAAGATCA  299

seq1  AGGGCATCTTGGTCCTGGAAAAACTGAGGTGAGACCATCCTACAATTAAA  347
      || |||||||||||||||||||||||||||||||||||| |||||||| |
seq2  AGTGCATCTTGGTCCTGGAAAAACTGAGGTGAGACCATCGTACAATTATA  349

seq1  CAACTGTTAGTCTATAACAGCCTGATGCCCTGAGAGGAACTGGGAGCTGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTTAGTCTATAACAGCCTGATGCCCTGAGAGGAACTGGGAGCTGC  399

seq1  TGCTCAAGAGACATAAGCTTCCGATCCAGCTGGCTGCTCCAAGATACGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAGAGACATAAGCTTCCGATCCAGCTGGCTGCTCCAAGATACGTG  449

seq1  ACTAGGCCGGTGGCTTCTGAGTTTGTTTCCTAATCCATGTAACATGCTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCCGGTGGCTTCTGAGTTTGTTTCCTAATCCATGTAACATGCTTT  499

seq1  TTTATGATACTCAAAGAAGACCAAAGTTGTCAAAATAGCTAATGACTAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGATACTCAAAGAAGACCAAAGTTGTCAAAATAGCTAATGACTAGG  549

seq1  AGGCAGACCAAAGGGGCACTGAAATGGCCATGCTCTATCAACTAGTGATC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGACCAAAGGGGCACTGAAATGGCCATGCTCTATCAACTAGTGATC  599

seq1  GCTACAGAATGAACCCCCATAGTCTATTTTGATTTTGTTCATTTGGTCCA  647
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCTACAGAATGAACCCCCATAGTATATTTTGATTTTGTTCATTTGGTCCA  649

seq1  ACTGTCACATTTTAATTTATATTTTCATCACTTCACTTTGGCCTATTAGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCACATTTTAATTTATATTTTCATCACTTCACTTTGGCCTATTAGC  699

seq1  ATTTTGGTTGGCCTTTCTGGTTCTGATGTGGGATTTCTATAGTTCCAAGA  747
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTTTGGTTGGCCTTTCTGGTTTTGATGTGGGATTTCTATAGTTCCAAGA  749

seq1  GGGTGCCTCTCCTCACATAGCCCCTGCTGTGTTCTCTCAGGGAATTAGTC  797
      ||||||||||||||||||||||||||  | ||||||||||||||||||||
seq2  GGGTGCCTCTCCTCACATAGCCCCTGAAGGGTTCTCTCAGGGAATTAGTC  799

seq1  TTTACATCCACACTGCCCTGTTCTCTCATGGAATCCATTCATATAGACCC  847
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  TTTACATCCACCATGCCCTGTTCTCTCATGGAATCCATTCATATAGACCC  849

seq1  CTTGCCATGTTTGCTCATGGAATTC  872
      | ||||||||||||||| |||||||
seq2  CCTGCCATGTTTGCTCA-GGAATTC  873

seq1: chr11_79058319_79059261
seq2: B6Ng01-111M19.g_118_1066

seq1  TGCTTGATAAAATTACACAGGGCTGGAGACACACCTCAGTAGTCAAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGATAAAATTACACAGGGCTGGAGACACACCTCAGTAGTCAAGAGC  50

seq1  ACACTCTGCTTGCAGAGGACCTGAGTTTGGTCCCCAGCACTTTATTGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTGCTTGCAGAGGACCTGAGTTTGGTCCCCAGCACTTTATTGCTC  100

seq1  CATGGGAATCTAACACTCTGACCTCCTCAGACACCCATACATAACCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAATCTAACACTCTGACCTCCTCAGACACCCATACATAACCACAT  150

seq1  GTAGACAAACATGAATATAGAGAACTAAAAATAATACAATTTAGAATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAAACATGAATATAGAGAACTAAAAATAATACAATTTAGAATATA  200

seq1  AAAGCCAGGCATGCTAATGTATACACCTTTAATCTCAGTATTTAGGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGGCATGCTAATGTATACACCTTTAATCTCAGTATTTAGGAGAT  250

seq1  AAAGACATTTGTTTCTATGAAGTAAAATACATCAATACACCACACGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATTTGTTTCTATGAAGTAAAATACATCAATACACCACACGTCTC  300

seq1  AGAAAGAAACTGAGTACACCAACATACTTTTCCATGAGGGTTAGAGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAACTGAGTACACCAACATACTTTTCCATGAGGGTTAGAGGATA  350

seq1  AAACATCTCGTATATTTTATGAAAGAATTTATGATCTATGCTTGCCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCTCGTATATTTTATGAAAGAATTTATGATCTATGCTTGCCAGCA  400

seq1  TTTAACCACATTACAAATCCTGATTTGTAAATCAGGCTATATAATCTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCACATTACAAATCCTGATTTGTAAATCAGGCTATATAATCTAAA  450

seq1  TTCTATTGGGTGACTAGATTTGTTGTTTTAAATAAAATTTTAAAAATAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTGGGTGACTAGATTTGTTGTTTTAAATAAAATTTTAAAAATAGG  500

seq1  GCTTTTTAAAAAAGATTTATTTATTATATGTAAGTACACTGTAGCTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTAAAAAAGATTTATTTATTATATGTAAGTACACTGTAGCTGTTT  550

seq1  TTCAGATACCCCAGAAGAGGGCATCAGATTTCATTATAGATGGTTGTGAG  600
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTCAGATACCCCAGAAGAGGGCATCAGTTTTCATTATAGATGGTTGTGAG  600

seq1  CCACCATGTGGTTGCTGGGA-TTTGAATTCAGGACCTTCGGCAGAACAG-  648
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  CCACCATGTGGTTGCTGGGATTTTGAATTCAGGACCTTCGGCAGAACAGT  650

seq1  TCAGTGCTCTTAAATTCTGAGCCATCTCTCTAGCCCCAAAATAATGTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTCTTAAATTCTGAGCCATCTCTCTAGCCCCAAAATAATGTTTT  700

seq1  TGATTTTAAAATTCATGTATTTAATATGTGAGTATTATTTTGC-TTGCAT  747
      |||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  TGATTTTAAAATTCATGTATTTTATATGTGAGTATTATTTTGCTTTGCAT  750

seq1  ATATGTCTGTGTAGC-ACCTGCATGCAG-TATCCAGAGGGGCCAGGA-GA  794
      ||||||||||||||| |||||||||||| ||||||||||||||| || ||
seq2  ATATGTCTGTGTAGCAACCTGCATGCAGTTATCCAGAGGGGCCAAGAGGA  800

seq1  TGTTGAATTCCTTAGACCTAG-AGTCAT-AGGTCTGTGT-GGTTGGTCTG  841
      ||||||||||||||||||||| |||||| || ||||||| ||||||||||
seq2  TGTTGAATTCCTTAGACCTAGAAGTCATAAGTTCTGTGTGGGTTGGTCTG  850

seq1  AGCAGTGTCAGACTGTTTGTTATAGTAACTGCTGGTTCCTGTTCCAGCTT  891
      |||||||||| |||||||| ||||| ||||||||||| ||||| ||||||
seq2  AGCAGTGTCAAACTGTTTGATATAGAAACTGCTGGTT-CTGTTTCAGCTT  899

seq1  ACTTACTTAAGCTGTGCTTTGTTTGATCTACATAGGAAAGGGACCCGAGT  941
      |||||| ||||||| |||||||| ||||||||||||||||||| ||||||
seq2  ACTTAC-TAAGCTGGGCTTTGTTGGATCTACATAGGAAAGGGA-CCGAGT  947

seq1  AT  943
      ||
seq2  AT  949

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information