BAC Information

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BAC

Clone NameB6Ng01-111M24
Chromosome11 (Build37)11 (Build37)
Map Location 95,996,900 - 95,998,02394,460,501 - 94,460,827
singlet/doubletsingletsinglet
Overlap geneTtll6
Upstream geneDlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52
Downstream geneHoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111M24.bB6Ng01-111M24.g
ACCDH918054DH918055
length1,14895
definitionDH918054|Mus musculus domesticus DNA, BAC clone: B6Ng01-111M24, 5' end.DH918055|Mus musculus domesticus DNA, BAC clone: B6Ng01-111M24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(95,996,900 - 95,998,023)(94,460,501 - 94,460,827)
sequence
gaattctttgcagtgtgaatataattaattctttaaaaattttttttctt
agctgggtgtggtggcatacgcctttaatcctagcactctggaggcagag
gcaggcggatttctgagttcgaggccagcctggtctacagggtgagttcc
aggacagccagtaaaaattctttttactttttttttttttaggtctagat
gtatgtgccatgctgggaaccaggcctggatcgtctgcaagagcagccat
cggtcttagctgctaactcctctctcagtccatttgaatacgattctgag
gtgacgcttccctgtcaccacccttaacatgctctcatcgtaccctctgg
tcacgtgcatgtcatctctgtgttttccttgcaactcggggcaggatctg
gagaactgcacacattgggagtggatgtctacttttgaaagagagggtcg
gctgctgtccatggcattgaatggggcaggctaggcagcctttcctgttc
tgtctctgggtgccaaccactaccttgttctctcctgagcatttcagtaa
ctacacaggcaggcggttggaacaagttcaaactcggcagctttcgggga
gcagagcaaactttcatcctaactgtgggtccaacctccaaggcgcccgg
cccctacctaattgacagctcattttataggtagggcctgtgttttcttc
aaccttggacacacccttagcctttttttcttcctgaacagtaaggggaa
atacagagggccatatgcccaaggggttgtgggcagctgagaaaatcagg
gcaaaagggaaaaaaaagcaaatggggaggttgggcaaaggggcgggcgt
agtggtcactcacttcggcaggaagaacaccaagttcttggggaagaaag
tggaaaattccttagggaaacagctttagcatgcggctcaatattccggg
gccagcaagtccttgcggcagatctcactcatcccaggaaaatgaatgga
ttttctgcaaagggagacggaattcataagcgattccggctgaaaattca
aagcaagactaaggggaggcaagcgagacatacggggctgctactgggcc
agatgcaccaggtccagggagggacgtacctgggtgctcttccatttc
taggacagccagggctacacagaggaatcctgtcttggaaaaagaaagaa
aggagagagagagagagagagaaagggagggagggagggagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_95996900_95998023
seq2: B6Ng01-111M24.b_46_1193 (reverse)

seq1  GAAAT-GAAGAGCTACCAGGTACGTCCCTCCCTGGACCTGTGGCATCTGG  49
      ||||| |||||||  |||||||||||||||||||||||||  ||||||||
seq2  GAAATGGAAGAGCACCCAGGTACGTCCCTCCCTGGACCTGGTGCATCTGG  50

seq1  -CCAGTGGCAGCCCCGTTTGTCTCGC-TGGCTCCCC-TAGCCCTGCTTTG  96
       ||||| |||||||||| |||||||| || |||||| ||| | |||||||
seq2  CCCAGTAGCAGCCCCGTATGTCTCGCTTGCCTCCCCTTAGTCTTGCTTTG  100

seq1  AA-TCTCAGCCGGAATCGCTTATGAATTCCGTCTCCCTTTGCAGAAAAT-  144
      || | |||||||||||||||||||||||||||||||||||||||||||| 
seq2  AATTTTCAGCCGGAATCGCTTATGAATTCCGTCTCCCTTTGCAGAAAATC  150

seq1  CAATCATTTTCCTGGGATGAGTGAGATCTGCCGCAAGGACTTGCTGG-CC  193
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CATTCATTTTCCTGGGATGAGTGAGATCTGCCGCAAGGACTTGCTGGCCC  200

seq1  CGGAATA-TGAGCCGCATGCTAAAGCTGTTT-CCTAAGGA--TTTCCAC-  238
      ||||||| ||||||||||||||||||||||| ||||||||  ||||||| 
seq2  CGGAATATTGAGCCGCATGCTAAAGCTGTTTCCCTAAGGAATTTTCCACT  250

seq1  TTCTTCCCC-AGGACTTGGTG-TCTTCCTGCCG-AGTGAGTGACCACTAC  285
      ||||||||| || |||||||| ||||||||||| ||||||||||||||||
seq2  TTCTTCCCCAAGAACTTGGTGTTCTTCCTGCCGAAGTGAGTGACCACTAC  300

seq1  GCCCGCCCCTTTGCC--AACTCCC--ATTGCTATTTTTTCCCTCTTGCCC  331
      |||||||||||||||  | |||||   ||||| |||||||||| ||||||
seq2  GCCCGCCCCTTTGCCCAACCTCCCCATTTGCTTTTTTTTCCCTTTTGCCC  350

seq1  TGA-TTTCTCAGCTG-CCACAACCCCTT-GGCATATGGCCCTCTGTATTT  378
      ||| ||||||||||| |||||||||||| |||||||||||||||||||||
seq2  TGATTTTCTCAGCTGCCCACAACCCCTTGGGCATATGGCCCTCTGTATTT  400

seq1  CCCCTTACTGTTCAGGAAG-AAAAAAGGCTAAGGGTGTGTCCAAGGTTG-  426
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  CCCCTTACTGTTCAGGAAGAAAAAAAGGCTAAGGGTGTGTCCAAGGTTGA  450

seq1  AGAAAACACAGGCCCTACCTATAAAATGAGCTGTCAATTAGGTAGGGGCC  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACACAGGCCCTACCTATAAAATGAGCTGTCAATTAGGTAGGGGCC  500

seq1  GGGCGCCTTGGAGGTTGGACCCACAGTTAGGATGAAAGTTTGCTCTGCTC  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGCCTTGGAGGTTGGACCCACAGTTAGGATGAAAGTTTGCTCTGCTC  550

seq1  CCCGAAAGCTGCCGAGTTTGAACTTGTTCCAACCGCCTGCCTGTGTAGTT  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAAAGCTGCCGAGTTTGAACTTGTTCCAACCGCCTGCCTGTGTAGTT  600

seq1  ACTGAAATGCTCAGGAGAGAACAAGGTAGTGGTTGGCACCCAGAGACAGA  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATGCTCAGGAGAGAACAAGGTAGTGGTTGGCACCCAGAGACAGA  650

seq1  ACAGGAAAGGCTGCCTAGCCTGCCCCATTCAATGCCATGGACAGCAGCCG  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAGGCTGCCTAGCCTGCCCCATTCAATGCCATGGACAGCAGCCG  700

seq1  ACCCTCTCTTTCAAAAGTAGACATCCACTCCCAATGTGTGCAGTTCTCCA  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTCTTTCAAAAGTAGACATCCACTCCCAATGTGTGCAGTTCTCCA  750

seq1  GATCCTGCCCCGAGTTGCAAGGAAAACACAGAGATGACATGCACGTGACC  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGCCCCGAGTTGCAAGGAAAACACAGAGATGACATGCACGTGACC  800

seq1  AGAGGGTACGATGAGAGCATGTTAAGGGTGGTGACAGGGAAGCGTCACCT  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTACGATGAGAGCATGTTAAGGGTGGTGACAGGGAAGCGTCACCT  850

seq1  CAGAATCGTATTCAAATGGACTGAGAGAGGAGTTAGCAGCTAAGACCGAT  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCGTATTCAAATGGACTGAGAGAGGAGTTAGCAGCTAAGACCGAT  900

seq1  GGCTGCTCTTGCAGACGATCCAGGCCTGGTTCCCAGCATGGCACATACAT  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTCTTGCAGACGATCCAGGCCTGGTTCCCAGCATGGCACATACAT  950

seq1  CTAGACCTAAAAAAAAAAAAAGTAAAAAGAATTTTTACTGGCTGTCCTGG  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCTAAAAAAAAAAAAAGTAAAAAGAATTTTTACTGGCTGTCCTGG  1000

seq1  AACTCACCCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCT  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACCCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCT  1050

seq1  CTGCCTCCAGAGTGCTAGGATTAAAGGCGTATGCCACCACACCCAGCTAA  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCAGAGTGCTAGGATTAAAGGCGTATGCCACCACACCCAGCTAA  1100

seq1  GAAAAAAAATTTTTAAAGAATTAATTATATTCACACTGCAAAGAATTC  1124
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAATTTTTAAAGAATTAATTATATTCACACTGCAAAGAATTC  1148

seq1: chr11_94460501_94460827
seq2: B6Ng01-111M24.g_73_165 (reverse)

seq1  TCTCTCCTTCTCTCTCTCTCTCTTGATAAATAGGTCTCTTCTGGACATAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTTCTCTGAGGCCTGACACTGAAGCCCTCAGAGATCACAGGCCTGAGGGC  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGTAAGTGACCTGCTTTGTTTACACAGAAAAATGCCAAAGATCACAAATG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTGGGGTTAGGGTAGTGGCTCAATCAGTAAAGCGACTGCGGTACAGTCAG  200
                                                        
seq2  --------------------------------------------------  0

seq1  AAGGAACTGAGTTCGGATCCCCAACTTTCTTTTCTT--TTTCTTTTCTTT  248
                                 ||| | | |   | | |  ||||
seq2  ---------------------------TCTCTCCCTCCCTCCCTCCCTTT  23

seq1  CTTTCTTTCT-TTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTCGAGAC  297
      || ||| ||| | ||| | |          ||| ||| ||||| | ||||
seq2  CTCTCTCTCTCTCTCTCTCC----------TTTCTTTCTTTTTCCAAGAC  63

seq1  AGGATTTCTCTGTGTAGTCCTGGCTGTCCT  327
      |||||| |||||||||| ||||||||||||
seq2  AGGATTCCTCTGTGTAGCCCTGGCTGTCCT  93