BAC Information

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BAC

Clone NameB6Ng01-112D05
Chromosome11 (Build37)
Map Location 28,974,731 - 29,094,325
singlet/doubletdoublet
Overlap genePnpt1, A630052C17Rik, Smek2
Upstream geneEG626571, Ccdc85a, Efemp1, LOC382504
Downstream geneLOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik, Spnb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112D05.bB6Ng01-112D05.g
ACCDH918330DH918331
length4461,056
definitionDH918330|Mus musculus domesticus DNA, BAC clone: B6Ng01-112D05, 5' end.DH918331|Mus musculus domesticus DNA, BAC clone: B6Ng01-112D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,093,874 - 29,094,325)(28,974,731 - 28,975,785)
sequence
atttacttgccattcggagcacttttctaactcaatctttacttactctt
aatttgaacatatctcaaataaatctgaggatatcactgtcagttcatat
agtaccaaaaaaaaaaaaaaaaagaaaaaaagaaaataacacgatggggc
ttaagtagtatatcagtgaagggagctggactatggcagcaggtacaaag
tcttaaggtgggaatttacagagcactttaatccacggccgaggataaac
taaaatgacaaatcaccatggtaattgtattttgataactccgatctgtc
tatctcggtcttttgatggcaggtgttaatttctctaagtgctcattaaa
agaatacatagagcatgggatcaaacccacatcattgtgcatgctaggca
agcaatctaccactgacctacagatccagaccaagtatgtgtgtgt
gaattccactgtgctactccagagcagatgtgagacaaggcaagcttgaa
aaaaaaaaaatcgggattgactagagatcacaacttaagagtcagaagca
ggacatctctgtctcctttaccctgaatcttggaactattggatcagtag
ctggcaactgcaaattaaaaatcataacagctggatgaggtgacacttac
aaaagggccaccccaatagtcaggaataaaaaaatgccagaggaagaaac
acaaggaaatccctcaggacagtatatctggccagtgggtgggtaccggc
attgtgtcatacttggtgcatactagaactgtctttctatgaaataaaat
ttgttttctcattctagaagctatctgctcctgagttttgctccattctt
gatgggctttttcttactaggtgggtgtgagactaatttcctgatctaga
gtaagaaacattccatatttagggtcactgagtcaacaggatgaagaaaa
cggtaaataattttttctctttaccaggaacattttgtttgttaattttg
attttacttatttgtttatctgtttctttattcccttctttatttatcca
cagcatcaattaacctgaaaggccgatcaccagtgagtgtctcttggtag
gagaacagtggcaacctgtcttcattttgtcacttttcaacccctcagtc
tacttagatttattcctcctgatgtttcagcagccaaagtccagtcatcg
ttctcttaaagtgacatcctggggggggggggattgctatgtgcatgcac
acacatgcacatgtacacacataccctattttctgcacgcgagtggtgac
taagtttgaccctgtttatatacttgtgctcccaggtatctaatggcttt
ctttcactgtgcacatgactggctacaatttcatcttatggggaaaagag
tgaaaattataaatcacaaaatgggggaatctaaccagagccaggtgata
caagctctgaatgtaattttttaattttatttttattgatattattatat
ttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_29093874_29094325
seq2: B6Ng01-112D05.b_49_500 (reverse)

seq1  ACACACACATACTTGGTCTGGATCTGTAGGTCAGTGGTAGATTGCTTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATACTTGGTCTGGATCTGTAGGTCAGTGGTAGATTGCTTGCC  50

seq1  TAGCATGCACAATGATGTGGGTTTGATCCCATGCTCTATGTATTCTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGCACAATGATGTGGGTTTGATCCCATGCTCTATGTATTCTTTTA  100

seq1  ATGAGCACTTAGAGAAATTAACACCTGCCATCAAAAGACCGAGATAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCACTTAGAGAAATTAACACCTGCCATCAAAAGACCGAGATAGACA  150

seq1  GATCGGAGTTATCAAAATACAATTACCATGGTGATTTGTCATTTTAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGGAGTTATCAAAATACAATTACCATGGTGATTTGTCATTTTAGTTT  200

seq1  ATCCTCGGCCGTGGATTAAAGTGCTCTGTAAATTCCCACCTTAAGACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCGGCCGTGGATTAAAGTGCTCTGTAAATTCCCACCTTAAGACTTT  250

seq1  GTACCTGCTGCCATAGTCCAGCTCCCTTCACTGATATACTACTTAAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGCTGCCATAGTCCAGCTCCCTTCACTGATATACTACTTAAGCCC  300

seq1  CATCGTGTTATTTTCTTTTTTTCTTTTTTTTTTTTTTTTTGGTACTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTGTTATTTTCTTTTTTTCTTTTTTTTTTTTTTTTTGGTACTATAT  350

seq1  GAACTGACAGTGATATCCTCAGATTTATTTGAGATATGTTCAAATTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGACAGTGATATCCTCAGATTTATTTGAGATATGTTCAAATTAAGA  400

seq1  GTAAGTAAAGATTGAGTTAGAAAAGTGCTCCGAATGGCAAGTAAATGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTAAAGATTGAGTTAGAAAAGTGCTCCGAATGGCAAGTAAATGAAT  450

seq1  TC  452
      ||
seq2  TC  452

seq1: chr11_28974731_28975785
seq2: B6Ng01-112D05.g_69_1124

seq1  GAATTCCACTGTGCTACTCCAGAGCAGATGTGAGACAAGGCAAGCTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGTGCTACTCCAGAGCAGATGTGAGACAAGGCAAGCTTGAA  50

seq1  AAAAAAAAAATCGGGATTGACTAGAGATCACAACTTAAGAGTCAGAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATCGGGATTGACTAGAGATCACAACTTAAGAGTCAGAAGCA  100

seq1  GGACATCTCTGTCTCCTTTACCCTGAATCTTGGAACTATTGGATCAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCTCTGTCTCCTTTACCCTGAATCTTGGAACTATTGGATCAGTAG  150

seq1  CTGGCAACTGCAAATTAAAAATCATAACAGCTGGATGAGGTGACACTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAACTGCAAATTAAAAATCATAACAGCTGGATGAGGTGACACTTAC  200

seq1  AAAAGGGCCACCCCAATAGTCAGGAATAAAAAAATGCCAGAGGAAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGCCACCCCAATAGTCAGGAATAAAAAAATGCCAGAGGAAGAAAC  250

seq1  ACAAGGAAATCCCTCAGGACAGTATATCTGGCCAGTGGGTGGGTACCGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAAATCCCTCAGGACAGTATATCTGGCCAGTGGGTGGGTACCGGC  300

seq1  ATTGTGTCATACTTGGTGCATACTAGAACTGTCTTTCTATGAAATAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTCATACTTGGTGCATACTAGAACTGTCTTTCTATGAAATAAAAT  350

seq1  TTGTTTTCTCATTCTAGAAGCTATCTGCTCCTGAGTTTTGCTCCATTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCTCATTCTAGAAGCTATCTGCTCCTGAGTTTTGCTCCATTCTT  400

seq1  GATGGGCTTTTTCTTACTAGGTGGGTGTGAGACTAATTTCCTGATCTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGCTTTTTCTTACTAGGTGGGTGTGAGACTAATTTCCTGATCTAGA  450

seq1  GTAAGAAACATTCCATATTTAGGGTCACTGAGTCAACAGGATGAAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAACATTCCATATTTAGGGTCACTGAGTCAACAGGATGAAGAAAA  500

seq1  CGGTAAATAATTTTTTCTCTTTACCAGGAACATTTTGTTTGTTAATTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAAATAATTTTTTCTCTTTACCAGGAACATTTTGTTTGTTAATTTTG  550

seq1  ATTTTACTTATTTGTTTATCTGTTTCTTTATTCCCTTCTTTATTTATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTTATTTGTTTATCTGTTTCTTTATTCCCTTCTTTATTTATCCA  600

seq1  CAGCATCAATTAACCTGAAAGGCCGATCACCAGTGAGTGTCTCTTGGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCAATTAACCTGAAAGGCCGATCACCAGTGAGTGTCTCTTGGTAG  650

seq1  GAGAACAGTGGCAACCTGTCTTCATTTTGTCACTTTTCAACCCCTCAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGTGGCAACCTGTCTTCATTTTGTCACTTTTCAACCCCTCAGTC  700

seq1  TACTTAGATTTATTCCTCCTGATGTTTCAGCAGCCAAAGTCCAGTCATCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGATTTATTCCTCCTGATGTTTCAGCAGCCAAAGTCCAGTCATCG  750

seq1  TTCTCTTAAAGTGACATCCT-GGGGGGGGGGGATTGCTATGTGCATGCAC  799
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTCTCTTAAAGTGACATCCTGGGGGGGGGGGGATTGCTATGTGCATGCAC  800

seq1  ACACATGCACATGTACACACATACCCTA-TTTCTGCACGCGAGTGGTGAA  848
      |||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  ACACATGCACATGTACACACATACCCTATTTTCTGCACGCGAGTGGTG-A  849

seq1  CTAAGTTTGACCCTGTTTATATACTTGTGCTCACAGGTATCTAATGGCCT  898
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  CTAAGTTTGACCCTGTTTATATACTTGTGCTCCCAGGTATCTAATGGCTT  899

seq1  TCTTTCCACTGT-CACATGACTGGCTACAATTTCATCTTAT-GGGAAAAG  946
      ||||| |||||| |||||||||||||||||||||||||||| ||||||||
seq2  TCTTT-CACTGTGCACATGACTGGCTACAATTTCATCTTATGGGGAAAAG  948

seq1  AGTGGAAATTTATAAATCACAAAAAGGTGGGAATCTAACCCAGAGCCAGG  996
      ||| |||| ||||||||||||||| || |||||||||| |||||||||||
seq2  AGT-GAAAATTATAAATCACAAAATGG-GGGAATCTAA-CCAGAGCCAGG  995

seq1  TGGTAACAAGCTCTGGAATGTAAATTTTTTAATTATTATTTTTATTGGAT  1046
      || | ||||||||| |||||| |||||||||||| ||||||||||| |||
seq2  TGAT-ACAAGCTCT-GAATGT-AATTTTTTAATT-TTATTTTTATT-GAT  1040

seq1  AT-------TTTCTTT  1055
      ||       |||||||
seq2  ATTATTATATTTCTTT  1056