BAC Information

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BAC

Clone NameB6Ng01-113N22
Chromosome11 (Build37)
Map Location 114,746,473 - 114,849,604
singlet/doubletdoublet
Overlap geneCd300a, Cd300lb, Cd300c, 4732429D16Rik
Upstream geneSdk2, LOC100041739, LOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c
Downstream geneCd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113N22.bB6Ng01-113N22.g
ACCDH919548DH919549
length912970
definitionDH919548|Mus musculus domesticus DNA, BAC clone: B6Ng01-113N22, 5' end.DH919549|Mus musculus domesticus DNA, BAC clone: B6Ng01-113N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,746,473 - 114,747,373)(114,848,646 - 114,849,604)
sequence
gaattctgtcaagtctatcatggtgaaccagtgaatttcttgtgattact
tacagaggtatgggtgactcaaagatgtaagaccacaggggaagttctcc
tgggtgacttacaggcaactataccactgaggagtcccacccagaccaca
gataacacaagaaaagaagctctggacaactggcaaaacttaaaacagac
ataccaggaaaagacccagagaagtatttcctcttatataaccaaggagg
aaggatatggtgaaggctttcgagcttgcccatccttctgtgaaggattc
tggttaagggtcttgggcaggtatgtgacagtaatgataattcaagatgg
cagccacactcagccttgaaaaaacagcaacacaagaatacctttaccca
tcttctctggggggcttccaatgtacaggagtcagtggccccaatccatc
acctccgtacccttcccaatggcatccacctctcatccattctgagaaga
ggctctgagccagatgagagaactgacttcctaaggaagggcttagccct
atggtcctgagttccccttccaacatctggtccagcgatgggagcttgtg
aaggagtgttgattcctcagtaccccaatgtcctgtggtgattttccatc
atttttgagtctgccttttgtgcctttgggctccttggcaggtttgtttt
gatgggatagaagtgtcagggatggggctcagactaactcctctttgcag
tagtagtttaaggtttctctctggttccaaggaaaataactttcctgggg
gatgattgacaatgcatgctcctccccactgggatctaacttccctatcg
cctgtttactaaaagcagagacactttccgctttggggaagagtctaagg
gcagtggtgaca
gaattcaggacctctggaagagcagcctgtggtcctaaccactgagccat
ctctccagagcctgctttatcattaagcaggtatttggaatttgttgctt
gtgcatgctgtgtaagcccctcaccaacagtgctgcgtcctcagacctac
ccaggagctctgggactcagattccacggatctgaaggacagcacagggt
ctgcgtgctgtgagctctgcaccacatggaggtcagattgcttggtgtca
ttttggtcagcctccaggacatctatcccagagactgctggaatgaccaa
tagtggtttctgtgtggccataggatgtgtcttctacaaatgaccctcct
gagggcattgggtctggaaatgaagctatcagtggacatggtcttctgac
acttcccctattccagacattggtcattgtcaccattgaatcttgtgaga
gctataactgggttcttcagcccttttgtcttagtctttttttcttttgt
tagttttattttcttttgaggctttaaccaataggataaaaatgctgatc
tgccttgggaaaaagggaagcctttttctggttgttatttcagctcatga
actctacttggctcagtaggagatcagtggtctgtttgtgtttttccagg
ctgctgcacggctcaggattcagtcacaggtccagaggaggtgagcgggt
caggagcagggctccttgacagtgcagtgcagatattcctcatactggaa
ggggttacaagaagtactggtgccgaggagttcctcagagatcatgtgat
attcttgttgaaaccgataaatcagagcagctggtgaaagaagaacccgt
gttctcattcagggacaactagagagacttcatcttcacagtgaccatgg
agggatctgaggatgagcgatgctggcatttactggttgtggaattacga
aaaggtggacctgatctcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_114746473_114747373
seq2: B6Ng01-113N22.b_50_961

seq1  GAATTCTGTCAAGTCTATCATGGTGAACCAGTGAATTTCTTGTGATTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCAAGTCTATCATGGTGAACCAGTGAATTTCTTGTGATTACT  50

seq1  TACAGAGGTATGGGTGACTCAAAGATGTAAGACCACAGGGGAAGTTCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGGTATGGGTGACTCAAAGATGTAAGACCACAGGGGAAGTTCTCC  100

seq1  TGGGTGACTTACAGGCAACTATACCACTGAGGAGTCCCACCCAGACCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGACTTACAGGCAACTATACCACTGAGGAGTCCCACCCAGACCACA  150

seq1  GATAACACAAGAAAAGAAGCTCTGGACAACTGGCAAAACTTAAAACAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACACAAGAAAAGAAGCTCTGGACAACTGGCAAAACTTAAAACAGAC  200

seq1  ATACCAGGAAAAGACCCAGAGAAGTATTTCCTCTTATATAACCAAGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGGAAAAGACCCAGAGAAGTATTTCCTCTTATATAACCAAGGAGG  250

seq1  AAGGATATGGTGAAGGCTTTCGAGCTTGCCCATCCTTCTGTGAAGGATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATATGGTGAAGGCTTTCGAGCTTGCCCATCCTTCTGTGAAGGATTC  300

seq1  TGGTTAAGGGTCTTGGGCAGGTATGTGACAGTAATGATAATTCAAGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAGGGTCTTGGGCAGGTATGTGACAGTAATGATAATTCAAGATGG  350

seq1  CAGCCACACTCAGCCTTGAAAAAACAGCAACACAAGAATACCTTTACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACACTCAGCCTTGAAAAAACAGCAACACAAGAATACCTTTACCCA  400

seq1  TCTTCTCTGGGGGGCTTCCAATGTACAGGAGTCAGTGGCCCCAATCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTGGGGGGCTTCCAATGTACAGGAGTCAGTGGCCCCAATCCATC  450

seq1  ACCTCCGTACCCTTCCCAATGGCATCCACCTCTCATCCATTCTGAGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCGTACCCTTCCCAATGGCATCCACCTCTCATCCATTCTGAGAAGA  500

seq1  GGCTCTGAGCCAGATGAGAGAACTGACTTCCTAAGGAAGGGCTTAGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGAGCCAGATGAGAGAACTGACTTCCTAAGGAAGGGCTTAGCCCT  550

seq1  ATGGTCCTGAGTTCCCCTTCCAACATCTGGTCCAGCGATGGGAGCTTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCTGAGTTCCCCTTCCAACATCTGGTCCAGCGATGGGAGCTTGTG  600

seq1  AAGGAGTGTTGATTCCTCAGTACCCCAATGTCCTGTGGTGATTTTCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTGTTGATTCCTCAGTACCCCAATGTCCTGTGGTGATTTTCCATC  650

seq1  A-TTTTGAGTCTGCC-TTTGTGCCTTTGGGCTCCTTGGCAGGTTTG-TTT  697
      | ||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  ATTTTTGAGTCTGCCTTTTGTGCCTTTGGGCTCCTTGGCAGGTTTGTTTT  700

seq1  GATGGGATAGAAGTGTCAGGGAT-GGGCTCAGACTAACTCCTCTTTGCAG  746
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GATGGGATAGAAGTGTCAGGGATGGGGCTCAGACTAACTCCTCTTTGCAG  750

seq1  TAGTAGTTCAAGGTTTCTCTCT-GTTCCAAGGAAAATAAC-TTCCT-GGG  793
      |||||||| ||||||||||||| ||||||||||||||||| ||||| |||
seq2  TAGTAGTTTAAGGTTTCTCTCTGGTTCCAAGGAAAATAACTTTCCTGGGG  800

seq1  GATGATTGACAATGCATGCTCCTCCCCACT-GGATCTAACTTCCCTATCG  842
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GATGATTGACAATGCATGCTCCTCCCCACTGGGATCTAACTTCCCTATCG  850

seq1  CCTGTTTACTAAAAGCAGAGACAC-TTCCGCTT--GGGAAGAGTCT-AGG  888
      |||||||||||||||||||||||| ||||||||  ||||||||||| |||
seq2  CCTGTTTACTAAAAGCAGAGACACTTTCCGCTTTGGGGAAGAGTCTAAGG  900

seq1  GCAGTAGGTGACA  901
      ||||| |||||||
seq2  GCAGT-GGTGACA  912

seq1: chr11_114848646_114849604
seq2: B6Ng01-113N22.g_68_1037 (reverse)

seq1  ATGGGATCAGGTCCACC-TTTCGTAATTCCAC-ACCAGTAAATGCCAGCA  48
      ||| ||||||||||||| |||||||||||||| |||||||||||||||||
seq2  ATGAGATCAGGTCCACCTTTTCGTAATTCCACAACCAGTAAATGCCAGCA  50

seq1  TCGCTCATCCTCAGAT-CCTCCATGGTCACTGTGAAGATGAAGTCTCTCT  97
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCGCTCATCCTCAGATCCCTCCATGGTCACTGTGAAGATGAAGTCTCTCT  100

seq1  GGTTGTCCCTG-ATGGACACAC-GGTTCTTC-TTCACCAGCTGCTCTGAT  144
       |||||||||| |||   |||| |||||||| ||||||||||||||||||
seq2  AGTTGTCCCTGAATGAGAACACGGGTTCTTCTTTCACCAGCTGCTCTGAT  150

seq1  TTATCGGTTTCAACAAGAATATCACATGATCTCTGAGGAACTCCTCGGCA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCGGTTTCAACAAGAATATCACATGATCTCTGAGGAACTCCTCGGCA  200

seq1  CCAGTACTTCTTGTAA-CCCTTCCAGTATGAGGAATATCTGCACTGCACT  243
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCAGTACTTCTTGTAACCCCTTCCAGTATGAGGAATATCTGCACTGCACT  250

seq1  GTCAAGGAGCCCTGCTCCTGA-CCGCTCACCTCCTCTGGACCTGTGACTG  292
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTCAAGGAGCCCTGCTCCTGACCCGCTCACCTCCTCTGGACCTGTGACTG  300

seq1  AATCCTGAGCCGTGCAGCAGCCTGG-AAAACACAAACAGACCACTGATCT  341
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATCCTGAGCCGTGCAGCAGCCTGGAAAAACACAAACAGACCACTGATCT  350

seq1  CCTACTGAGCCAAGTAGAGTTCATGAGCTG-AATAACAACCAGAAAAAGG  390
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTACTGAGCCAAGTAGAGTTCATGAGCTGAAATAACAACCAGAAAAAGG  400

seq1  CTTCCC-TTTTCCCAAGGCAGATCAGCATTTTTATCCTATTGGTTAAAGC  439
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTTTTCCCAAGGCAGATCAGCATTTTTATCCTATTGGTTAAAGC  450

seq1  CTCAAAAGAAAATAAAACTAACAAAAGAAAAAAAGACTAAGACAAAAGGG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGAAAATAAAACTAACAAAAGAAAAAAAGACTAAGACAAAAGGG  500

seq1  CTGAAGAACCCAGTTATAGCTCTCACAAGATTCAATGGTGACAATGACCA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAACCCAGTTATAGCTCTCACAAGATTCAATGGTGACAATGACCA  550

seq1  ATGTCTGGAATAGGGGAAGTGTCAGAAGACCATGTCCACTGATAGCTTCA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGGAATAGGGGAAGTGTCAGAAGACCATGTCCACTGATAGCTTCA  600

seq1  TTTCCAGACCCAATGCCCTCAGGAGGGTCATTTGTAGAAGACACATCCTA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGACCCAATGCCCTCAGGAGGGTCATTTGTAGAAGACACATCCTA  650

seq1  TGGCCACACAGAAACCACTATTGGTCATTCCAGCAGTCTCTGGGATAGAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACACAGAAACCACTATTGGTCATTCCAGCAGTCTCTGGGATAGAT  700

seq1  GTCCTGGAGGCTGACCAAAATGACACCAAGCAATCTGACCTCCATGTGGT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAGGCTGACCAAAATGACACCAAGCAATCTGACCTCCATGTGGT  750

seq1  GCAGAGCTCACAGCACGCAGACCCTGTGCTGTCCTTCAGATCCGTGGAAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTCACAGCACGCAGACCCTGTGCTGTCCTTCAGATCCGTGGAAT  800

seq1  CTGAGTCCCAGAGCTCCTGGGTAGGTCTGAGGACGCAGCACTGTTGGTGA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCCCAGAGCTCCTGGGTAGGTCTGAGGACGCAGCACTGTTGGTGA  850

seq1  GGGGCTTACACAGCATGCACAAGCAACAAATTCCAAATACCTGCTTAATG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTACACAGCATGCACAAGCAACAAATTCCAAATACCTGCTTAATG  900

seq1  ATAAAGCAGGCTCTGGAGAGATGGCTCAGTGGTTAGGACCACAGGCTGCT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCAGGCTCTGGAGAGATGGCTCAGTGGTTAGGACCACAGGCTGCT  950

seq1  CTTCCAGAGGTCCTGAATTC  959
      ||||||||||||||||||||
seq2  CTTCCAGAGGTCCTGAATTC  970