BAC Information

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BAC

Clone NameB6Ng01-114K20
Chromosome11 (Build37)
Map Location 103,463,738 - 103,639,594
singlet/doubletdoublet
Overlap geneGm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3
Upstream geneFzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a
Downstream geneNsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114K20.bB6Ng01-114K20.g
ACCDH920139DH920140
length7141,005
definitionDH920139|Mus musculus domesticus DNA, BAC clone: B6Ng01-114K20, 5' end.DH920140|Mus musculus domesticus DNA, BAC clone: B6Ng01-114K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,463,738 - 103,464,451)(103,638,579 - 103,639,594)
sequence
gaattcctcttctctcccttggcaacttgcctttggaaaagatgcaagaa
gcttgtatcccaccagagtccatacctgctgccagaacctctgaggccat
gcaggatgccagaaccccacaactctggtagagggcctctgctccaacaa
aggctacctgggtatcagaagtccagccaccaacttgggcaaaaaccctc
tattcaactataggccaccctggccaaaagaccagaaaggaaacagaaac
caaggaacaaaacacccattcaacaaagacaaacacagaaatcagcacct
agatctataatcaccctaaatccagatgcctagacaccagtgtaagaaca
cagccacagcaaaagcaatatgccaccaccagaacccagttatcctacta
tagcaagtcctggatattccagcacagctgaagcacaagaaaatgacctt
aagctgaactttatgaaggcgagcgagtccttaaaaagaaaattaataaa
tcccttaaagaaatcaaggaaaagaatcaaaaataggaggaaatgagtaa
taacccttaaagaaaaccagataagttgaggataccacaagaacacagcc
cacagaatcaactaagcagggatttcagagactgaaatgacagtcacaga
tcctgtgtggatctgagctagtcctctgcatacatgttatggttgtgtag
cttggtgtccttgt
gaattcccccacggcaagatcttctctggaagagcgaccaccctgctaaa
gcttggccatccgatctggtatctcccatctgtctgtctgtctgtctgtc
tgtctgactgactgactgactgtctgtgggatcaacagcctccagccagc
tcggctcaccagccctagccccagccagctgtaattcctgcctgttacaa
gtgttaacacctggcctggggccttcctcccccacagtctccaggtgcct
ccctgggcccagcccactgacccccacgggggtttgactgaacacgttcc
ttagttcccaagcctcggagagaaggctgttgggtgggcgttgagcaggg
gaggcagcaggatgtgacacatagagaaactgaggcagggcttaagatag
gtgcttgggtggaggatgggctctggagtggtgcaatgagaacccaggcg
ccctaacaggcttggagccctcagcaaaacatttcccctctaaactgcaa
ggttgggtaaaaagtgagaaaagtgacccccaaaagggggggtggggagg
aatcaccagtcctcagccacacagtgtgaagtgagctgccaaacaccacc
cagccaaccaggcctcctttttcagggcacttccaatggagcacagatgg
cacagggcaaggccgtagaacgatcttattcctcaagaaagagaaagaca
gatttctttactaggagctaactagtactatgaaaggagagttctagaaa
gcaggctggttgtcactgggtctgctccaatggagccactgccaggctgg
gaggctctggagcacagggcttccttttagagtaagaggcccctcagagc
cccttcctcatcaccttgtctcagagtgggggcccttgcaaggaaagcag
gatggctactgggagtaggggtctttctgaagtgatgtggacagaaatcc
agctagccatttcccctgtaatctctgggtaacgtgaaactggtgggcca
aagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_103463738_103464451
seq2: B6Ng01-114K20.b_45_758

seq1  GAATTCCTCTTCTCTCCCTTGGCAACTTGCCTTTGGAAAAGATGCAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTCTCTCCCTTGGCAACTTGCCTTTGGAAAAGATGCAAGAA  50

seq1  GCTTGTATCCCACCAGAGTCCATACCTGCTGCCAGAACCTCTGAGGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTATCCCACCAGAGTCCATACCTGCTGCCAGAACCTCTGAGGCCAT  100

seq1  GCAGGATGCCAGAACCCCACAACTCTGGTAGAGGGCCTCTGCTCCAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATGCCAGAACCCCACAACTCTGGTAGAGGGCCTCTGCTCCAACAA  150

seq1  AGGCTACCTGGGTATCAGAAGTCCAGCCACCAACTTGGGCAAAAACCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACCTGGGTATCAGAAGTCCAGCCACCAACTTGGGCAAAAACCCTC  200

seq1  TATTCAACTATAGGCCACCCTGGCCAAAAGACCAGAAAGGAAACAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAACTATAGGCCACCCTGGCCAAAAGACCAGAAAGGAAACAGAAAC  250

seq1  CAAGGAACAAAACACCCATTCAACAAAGACAAACACAGAAATCAGCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAACAAAACACCCATTCAACAAAGACAAACACAGAAATCAGCACCT  300

seq1  AGATCTATAATCACCCTAAATCCAGATGCCTAGACACCAGTGTAAGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTATAATCACCCTAAATCCAGATGCCTAGACACCAGTGTAAGAACA  350

seq1  CAGCCACAGCAAAAGCAATATGCCACCACCAGAACCCAGTTATCCTACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACAGCAAAAGCAATATGCCACCACCAGAACCCAGTTATCCTACTA  400

seq1  TAGCAAGTCCTGGATATTCCAGCACAGCTGAAGCACAAGAAAATGACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGTCCTGGATATTCCAGCACAGCTGAAGCACAAGAAAATGACCTT  450

seq1  AAGCTGAACTTTATGAAGGCGAGCGAGTCCTTAAAAAGAAAATTAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAACTTTATGAAGGCGAGCGAGTCCTTAAAAAGAAAATTAATAAA  500

seq1  TCCCTTAAAGAAATCAAGGAAAAGAATCAAAAATAGGAGGAAATGAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAAAGAAATCAAGGAAAAGAATCAAAAATAGGAGGAAATGAGTAA  550

seq1  TAACCCTTAAAGAAAACCAGATAAGTTGAGGATACCACAAGAACACAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTTAAAGAAAACCAGATAAGTTGAGGATACCACAAGAACACAGCC  600

seq1  CACAGAATCAACTAAGCAGGGATTTCAGAGACTGAAATGACAGTCACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATCAACTAAGCAGGGATTTCAGAGACTGAAATGACAGTCACAGA  650

seq1  TCCTGTGTGGATCTGAGCTAGTCCTCTGCATACATGTTATGGTTGTGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTGGATCTGAGCTAGTCCTCTGCATACATGTTATGGTTGTGTAG  700

seq1  CTTGGTGTCCTTGT  714
      ||||||||||||||
seq2  CTTGGTGTCCTTGT  714

seq1: chr11_103638579_103639594
seq2: B6Ng01-114K20.g_69_1073 (reverse)

seq1  CTCTTTGGCCCACCCGGCTCTCACGTTCACCCAGAGGATTTACAGGGGAA  50
      |||||||||||||| |  | ||||||| ||||||||   |||||||||||
seq2  CTCTTTGGCCCACCAG--TTTCACGTT-ACCCAGAG--ATTACAGGGGAA  45

seq1  ATGGCTTAGCTGGGATTTCTGTCCACATCACCTTCAGAAAGGACCCCTAC  100
      ||||| ||||| |||||||||||||||||| ||||||||| |||||||||
seq2  ATGGC-TAGCT-GGATTTCTGTCCACATCA-CTTCAGAAA-GACCCCTAC  91

seq1  TCCCAGTAGCCCATCCCTGCTTTTCCTTGCAAGGGCCCCAACTCTGAGAC  150
      ||||||||| |||| ||||| |||||||||||||||||| ||||||||||
seq2  TCCCAGTAG-CCAT-CCTGC-TTTCCTTGCAAGGGCCCCCACTCTGAGAC  138

seq1  AAGGTGATGAGGAAGGGGCTCTGAGGGGCCTCTTACTCTAAAAGGAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGATGAGGAAGGGGCTCTGAGGGGCCTCTTACTCTAAAAGGAAGCC  188

seq1  CTGTGCTCCAGAGCCTCCCAGCCTGGCAGTGGCTCCATTGGAGCAGGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  CTGTGCTCCAGAGCCTCCCAGCCTGGCAGTGGCTCCATTGGAGCAGACCC  238

seq1  AGTGACAACCAGCCTGCTTTCTAGAACTCTCC-TTCATAGTACTAGTTAG  299
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGTGACAACCAGCCTGCTTTCTAGAACTCTCCTTTCATAGTACTAGTTAG  288

seq1  CTCCTAGTAAAGAAATCTGTCTTTCTCTTTCTTGAGGAATAAGATCGTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGTAAAGAAATCTGTCTTTCTCTTTCTTGAGGAATAAGATCGTTC  338

seq1  TACGGCCTTGCCCTGTGCCATCTGTGCTCCATTGGAAGTGCCCTGAAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGCCTTGCCCTGTGCCATCTGTGCTCCATTGGAAGTGCCCTGAAAAA  388

seq1  GGAGGCCTGGTTGGCTGGGTGGTGTTTGGCAGCTCACTTCACACTGTGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCTGGTTGGCTGGGTGGTGTTTGGCAGCTCACTTCACACTGTGTG  438

seq1  GCTGAGGACTGGTGATTCCTCCCCACCCCCCCTTTTGGGGGTCACTTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGACTGGTGATTCCTCCCCACCCCCCCTTTTGGGGGTCACTTTTC  488

seq1  TCACTTTTTACCCAACCTTGCAGTTTAGAGGGGAAATGTTTTGCTGAGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTTTACCCAACCTTGCAGTTTAGAGGGGAAATGTTTTGCTGAGGG  538

seq1  CTCCAAGCCTGTTAGGGCGCCTGGGTTCTCATTGCACCACTCCAGAGCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGCCTGTTAGGGCGCCTGGGTTCTCATTGCACCACTCCAGAGCCC  588

seq1  ATCCTCCACCCAAGCACCTATCTTAAGCCCTGCCTCAGTTTCTCTATGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCACCCAAGCACCTATCTTAAGCCCTGCCTCAGTTTCTCTATGTG  638

seq1  TCACATCCTGCTGCCTCCCCTGCTCAACGCCCACCCAACAGCCTTCTCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCCTGCTGCCTCCCCTGCTCAACGCCCACCCAACAGCCTTCTCTC  688

seq1  CGAGGCTTGGGAACTAAGGAACGTGTTCAGTCAAACCCCCGTGGGGGTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCTTGGGAACTAAGGAACGTGTTCAGTCAAACCCCCGTGGGGGTCA  738

seq1  GTGGGCTGGGCCCAGGGAGGCACCTGGAGACTGTGGGGGAGGAAGGCCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGGGCCCAGGGAGGCACCTGGAGACTGTGGGGGAGGAAGGCCCC  788

seq1  AGGCCAGGTGTTAACACTTGTAACAGGCAGGAATTACAGCTGGCTGGGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGGTGTTAACACTTGTAACAGGCAGGAATTACAGCTGGCTGGGGC  838

seq1  TAGGGCTGGTGAGCCGAGCTGGCTGGAGGCTGTTGATCCCACAGACAGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTGGTGAGCCGAGCTGGCTGGAGGCTGTTGATCCCACAGACAGTC  888

seq1  AGTCAGTCAGTCAGACAGACAGACAGACAGACAGACAGATGGGAGATACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTCAGTCAGACAGACAGACAGACAGACAGACAGATGGGAGATACC  938

seq1  AGATCGGATGGCCAAGCTTTAGCAGGGTGGTCGCTCTTCCAGAGAAGATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGGATGGCCAAGCTTTAGCAGGGTGGTCGCTCTTCCAGAGAAGATC  988

seq1  TTGCCGTGGGGGAATTC  1016
      |||||||||||||||||
seq2  TTGCCGTGGGGGAATTC  1005