BAC Information

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BAC

Clone NameB6Ng01-115H17
Chromosome11 (Build37)
Map Location 84,808,352 - 84,924,106
singlet/doubletdoublet
Overlap geneUsp32, LOC668794
Upstream geneAp1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4
Downstream geneLOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d, Bcas3, Tbx2, Tbx4, LOC668751, Brip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115H17.bB6Ng01-115H17.g
ACCDH920735DH920736
length957814
definitionDH920735|Mus musculus domesticus DNA, BAC clone: B6Ng01-115H17, 5' end.DH920736|Mus musculus domesticus DNA, BAC clone: B6Ng01-115H17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,808,352 - 84,809,301)(84,923,295 - 84,924,106)
sequence
gaattcactaagataactttgaacttctgatcctcagtttgtttgtgtag
caatttccccagaactgaaatagtctccctgtgaaactaaagagatgatt
cagccattaagagtactggcgagatggctcagagggtaaaagcactgact
gctcttccgaaggtccttagttcaaatcctagcaaccacatgttggctca
caactacttataatgagatctgagggaggccctcttctggtgcgtctgaa
gacagttacagtgtatttatgtatatttatgtataataataaataaatct
ttgggctggagcaagtggggactgagcgagcggggttgaccagagtgagc
agaggtcctaaaattcaattcccaacaaccacatgaaggctcacaaccat
ctgtacagatacagtgtactcatagacatgaaataaataaatcttgagag
agagagagagagaaagagagagagagagagagagaaaagaaaactggctg
ctctttctgaggaactgggtttaatttccagtacccacatgatgtataac
aactagctgaagttctaagtccaaggggatctgatgcccttttctggcct
ctgcaagcatagcacatgtacataatatattccctccaagatgtggtcgc
agaaggcttatgagattcaggttgttaaacttcacataaagctgaaacct
gccaagatcttcaaagtgcccctgccccagctgtatacaacccacaaaca
attgcctgagaagactgaccagccaaaatgctaagagatttttttttttg
acctacccagcttgggcagaagtcagaagagagcagatcctgtagagcca
ccagggtgggtactgggaaattgaacccagggtcctctggaaggagagag
tgctctttaacttctttctagcctctgatagacctgcataattcagtatc
ttgtttc
gaattcccattttccaagattctttcatgaaagtttcttcatctgtattc
cctttgcaccttttacttgttatgttccttattactttgtataaacttga
gttgttatgcatttgaactctagtgcccttcctctggcagacatgtccaa
cccactgctcaagatagctgtgcatgaatcccatcacagacctgtaaatt
tcctataaaaatatgtgttttatgaaaaaaatcttttggcaactctaatg
tgaagttcttaaatatgaactttgtattggttggttggggaaggggtgtt
ggacatgaattctttaaatactccacagtgagtgtagttatagttgagat
cattccacaatgtatgaataactgaagaaaaggggaactactagaccaaa
gagattaaagcctcacagtaactgacttggagcaagactcagattattga
catttatctttttagctcccttagcatccagcacactgttgccagttatg
attgacaaaatgtatttacctattcatttgtgtggtattttatgtagctg
tgtaggctactctgattgtatttagtttcctttttttttttttgggtctt
agatggggtttcactctggctcagaatggccttgaactcctgatccctct
gcttgtatatccccagtgctgggatgacaggaatgcactaccttgaaggg
cttgaataacttttgtagcagaaattgctggactacaagattgtgaagtg
ccttttaggaagcaacaaacaaaaacaaggtcttactatgtagccttggg
ctgttctagaactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_84808352_84809301
seq2: B6Ng01-115H17.b_46_1002

seq1  GAATTCACTAAGATAACTTTGAACTTCTGATCCTCAGTTTGTTTGTGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAGATAACTTTGAACTTCTGATCCTCAGTTTGTTTGTGTAG  50

seq1  CAATTTCCCCAGAACTGAAATAGTCTCCCTGTGAAACTAAAGAGATGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCCCCAGAACTGAAATAGTCTCCCTGTGAAACTAAAGAGATGATT  100

seq1  CAGCCATTAAGAGTACTGGCGAGATGGCTCAGAGGGTAAAAGCACTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATTAAGAGTACTGGCGAGATGGCTCAGAGGGTAAAAGCACTGACT  150

seq1  GCTCTTCCGAAGGTCCTTAGTTCAAATCCTAGCAACCACATGTTGGCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCCGAAGGTCCTTAGTTCAAATCCTAGCAACCACATGTTGGCTCA  200

seq1  CAACTACTTATAATGAGATCTGAGGGAGGCCCTCTTCTGGTGCGTCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTACTTATAATGAGATCTGAGGGAGGCCCTCTTCTGGTGCGTCTGAA  250

seq1  GACAGTTACAGTGTATTTATGTATATTTATGTATAATAATAAATAAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTACAGTGTATTTATGTATATTTATGTATAATAATAAATAAATCT  300

seq1  TTGGGCTGGAGCAAGTGGGGACTGAGCGAGCGGGGTTGACCAGAGTGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTGGAGCAAGTGGGGACTGAGCGAGCGGGGTTGACCAGAGTGAGC  350

seq1  AGAGGTCCTAAAATTCAATTCCCAACAACCACATGAAGGCTCACAACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCCTAAAATTCAATTCCCAACAACCACATGAAGGCTCACAACCAT  400

seq1  CTGTACAGATACAGTGTACTCATAGACATGAAATAAATAAATCTTGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAGATACAGTGTACTCATAGACATGAAATAAATAAATCTTGAGAG  450

seq1  AGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAAAAGAAAACTGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAAAAGAAAACTGGCTG  500

seq1  CTCTTTCTGAGGAACTGGGTTTAATTTCCAGTACCCACATGATGTATAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTGAGGAACTGGGTTTAATTTCCAGTACCCACATGATGTATAAC  550

seq1  AACTAGCTGAAGTTCTAAGTCCAAGGGGATCTGATGCCCTTTTCTGGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCTGAAGTTCTAAGTCCAAGGGGATCTGATGCCCTTTTCTGGCCT  600

seq1  CTGCAAGCATAGCACATGTACATAATATATTCCCTCCAAGATGTGGTCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGCATAGCACATGTACATAATATATTCCCTCCAAGATGTGGTCGC  650

seq1  AGAAGGCTTATGAGATTCAGGTTGTTAAACTTCACATAAAGCTGAAACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTTATGAGATTCAGGTTGTTAAACTTCACATAAAGCTGAAACCT  700

seq1  GCCAAGATCTTCAAAGTGCCCCTGCCCCAGCTGTATACAACCCACAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGATCTTCAAAGTGCCCCTGCCCCAGCTGTATACAACCCACAAACA  750

seq1  ATTGCCTGAGAAGACTGACCAGCCAAAATGCTAAGAGA-TTTTTTTTTTG  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTGCCTGAGAAGACTGACCAGCCAAAATGCTAAGAGATTTTTTTTTTTG  800

seq1  ACCTACCCAGCTTGGGCAGAAGTCAGAAGAGAGCAGATCCTGTAGAGCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCCAGCTTGGGCAGAAGTCAGAAGAGAGCAGATCCTGTAGAGCCA  850

seq1  CCA-GGTGGGTACTGGG-AATTGAA-CCAGGGTCCTCTGGAA-GAGAGTA  895
      ||| ||||||||||||| ||||||| |||||||||||||||| ||||| |
seq2  CCAGGGTGGGTACTGGGAAATTGAACCCAGGGTCCTCTGGAAGGAGAG-A  899

seq1  GTGCTC-TTAACTACTTTCTAG-CTCTGATAGAGCTGCATAATTCAGTA-  942
      |||||| |||||| |||||||| |||||||||| ||||||||||||||| 
seq2  GTGCTCTTTAACTTCTTTCTAGCCTCTGATAGACCTGCATAATTCAGTAT  949

seq1  CCTGTTTC  950
      | ||||||
seq2  CTTGTTTC  957

seq1: chr11_84923295_84924106
seq2: B6Ng01-115H17.g_73_886 (reverse)

seq1  GAGTTCTAGAACAG-CCAAGGCTACATAGTAAGACCTTGTTTTTGTTTGT  49
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAGTTCTAGAACAGCCCAAGGCTACATAGTAAGACCTTGTTTTTGTTTGT  50

seq1  TGCTTCCT-AAAGGCACTTCACAATCTTGTAGTCCAGCAATTTCTGCTAC  98
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTAAAAGGCACTTCACAATCTTGTAGTCCAGCAATTTCTGCTAC  100

seq1  AAAAGTTATTCAAGCCCTTCAAGGTAGTGCATTCCTGTCATCCCAGCACT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTATTCAAGCCCTTCAAGGTAGTGCATTCCTGTCATCCCAGCACT  150

seq1  GGGGATATACAAGCAGAGGGATCAGGAGTTCAAGGCCATTCTGAGCCAGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATATACAAGCAGAGGGATCAGGAGTTCAAGGCCATTCTGAGCCAGA  200

seq1  GTGAAACCCCATCTAAGACCCAAAAAAAAAAAAAGGAAACTAAATACAAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACCCCATCTAAGACCCAAAAAAAAAAAAAGGAAACTAAATACAAT  250

seq1  CAGAGTAGCCTACACAGCTACATAAAATACCACACAAATGAATAGGTAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAGCCTACACAGCTACATAAAATACCACACAAATGAATAGGTAAA  300

seq1  TACATTTTGTCAATCATAACTGGCAACAGTGTGCTGGATGCTAAGGGAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTGTCAATCATAACTGGCAACAGTGTGCTGGATGCTAAGGGAGC  350

seq1  TAAAAAGATAAATGTCAATAATCTGAGTCTTGCTCCAAGTCAGTTACTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGATAAATGTCAATAATCTGAGTCTTGCTCCAAGTCAGTTACTGT  400

seq1  GAGGCTTTAATCTCTTTGGTCTAGTAGTTCCCCTTTTCTTCAGTTATTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTTAATCTCTTTGGTCTAGTAGTTCCCCTTTTCTTCAGTTATTCA  450

seq1  TACATTGTGGAATGATCTCAACTATAACTACACTCACTGTGGAGTATTTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGTGGAATGATCTCAACTATAACTACACTCACTGTGGAGTATTTA  500

seq1  AAGAATTCATGTCCAACACCCCTTCCCCAACCAACCAATACAAAGTTCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCATGTCCAACACCCCTTCCCCAACCAACCAATACAAAGTTCAT  550

seq1  ATTTAAGAACTTCACATTAGAGTTGCCAAAAGATTTTTTTCATAAAACAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGAACTTCACATTAGAGTTGCCAAAAGATTTTTTTCATAAAACAC  600

seq1  ATATTTTTATAGGAAATTTACAGGTCTGTGATGGGATTCATGCACAGCTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTATAGGAAATTTACAGGTCTGTGATGGGATTCATGCACAGCTA  650

seq1  TCTTGAGCAGTGGGTTGGACATGTCTGCCAGAGGAAGGGCACTAGAGTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGCAGTGGGTTGGACATGTCTGCCAGAGGAAGGGCACTAGAGTTC  700

seq1  AAATGCATAACAACTCAAGTTTATACAAAGTAATAAGGAACATAACAAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCATAACAACTCAAGTTTATACAAAGTAATAAGGAACATAACAAGT  750

seq1  AAAAGGTGCAAAGGGAATACAGATGAAGAAACTTTCATGAAAGAATCTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTGCAAAGGGAATACAGATGAAGAAACTTTCATGAAAGAATCTTG  800

seq1  GAAAATGGGAATTC  812
      ||||||||||||||
seq2  GAAAATGGGAATTC  814