BAC Information

Click to search

BAC

Clone NameB6Ng01-115M08
Chromosome11 (Build37)
Map Location 45,340,363 - 45,491,699
singlet/doubletdoublet
Overlap genenone
Upstream gene3732413I11Rik, Ebf1, LOC382510
Downstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115M08.bB6Ng01-115M08.g
ACCDH920948DH920949
length3171,122
definitionDH920948|Mus musculus domesticus DNA, BAC clone: B6Ng01-115M08, 5' end.DH920949|Mus musculus domesticus DNA, BAC clone: B6Ng01-115M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,491,383 - 45,491,699)(45,340,363 - 45,341,500)
sequence
gaattccatagatgataatggtgtcacctgaaatagcttcctgaatagag
agtaaaggggagagaaacagcaacatccacagccaatgtgcaaccgggga
acagttggttttcttggaagtaatcttacattggttttgggctcattgtc
ctagttttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgctaga
aggtagatttaaaaataatattttatttttaattaaattgtgtgtgtatg
tgtgctcgtgcgcacttcatgtgagtacagattcctgaagaggttagaga
tctcaggtccctaggtg
gaattcattcagcttacaactccaggttataagtccatcattgtagggaa
gccaagggaataacttgaagcaactactcacatccacagtcaaaagcaga
gagagggaatgcacgtgtgcctgccctcagttcttcttctccatttctca
acgggaacccccaactcatggaactgtgccacgatgggcagcttttctct
cctgagttcaatcaaggcaatccctcacagacatgtccataggccaacca
aatcttgatcacctccattgagtcacttttcccaggcggttctccaatgt
gtcaagctggcaattggaactaaccatcacaattatttgcctttctacca
acgggaaacaaataatttcataaatcagggtccaggcaacagcaggaagc
tgcggcatcgtgccgtggttatgaatgcttttactctgaacgacaaagaa
cacaaggtattttcagaaaattactttatctccttgccattacaaattat
tctattaaactatgaaacactcttctctcagactacctactgtgtatttg
ttcataagaagctcacctcataaggagtaagttcaaacaaatatttgaaa
tctccctaagttcataagcgtattaacttctgtcttccaaacaagcttta
gtaactagaaaatgcaaagaatgggttttcacctactaaaaaattgaggg
aaggaaaagttggctcagcaattaagaactcctggatggcactcttcatc
caggggactcaagttcaattctcaacaccctccccaaggagctcacagcc
cacagtaactccagccctataggatgtgacaccccgacgccctcttctgg
tgtctgtgggcactgcactcacatgcacacgcacacaaaataaaaattga
atcttaacaattttaataaatacttgcatttaatgctagcagacttatat
ggtgtaatatggagaacacaccttttctctgtggtcagtaaatgcaaact
gtctgtcccagtgggtgtagctcacttctccacactcctaatgaaacaaa
aatataacttaaaacatctcccatctccacgcaaatgataatcagttgta
agtacatactgcagaactccga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_45491383_45491699
seq2: B6Ng01-115M08.b_42_358 (reverse)

seq1  CACCTAGGGACCTGAGATCACTAGCCTCTTCAGGAATCTGTACTCACATG  50
      ||||||||||||||||||| ||| ||||||||||||||||||||||||||
seq2  CACCTAGGGACCTGAGATCTCTAACCTCTTCAGGAATCTGTACTCACATG  50

seq1  TAGTGCGCACGAGCACACATACACACACAATTTAATTAAAAATAAAATAT  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCGCACGAGCACACATACACACACAATTTAATTAAAAATAAAATAT  100

seq1  TATTTTTAAATCTACCTTCTAGCAACACACACACACACACACACACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAAATCTACCTTCTAGCAACACACACACACACACACACACACAC  150

seq1  ACACACACCAAAACTAGGACAATGAGCCCAAAACCAATGTAAGATTACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACCAAAACTAGGACAATGAGCCCAAAACCAATGTAAGATTACTT  200

seq1  CCAAGAAAACCAACTGTTCCCCGGTTGCACATTGGCTGTGGATGTTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAAACCAACTGTTCCCCGGTTGCACATTGGCTGTGGATGTTGCTG  250

seq1  TTTCTCTCCCCTTTACTCTCTATTCAGGAAGCTATTTCAGGTGACACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCCCCTTTACTCTCTATTCAGGAAGCTATTTCAGGTGACACCAT  300

seq1  TATCATCTATGGAATTC  317
      |||||||||||||||||
seq2  TATCATCTATGGAATTC  317

seq1: chr11_45340363_45341500
seq2: B6Ng01-115M08.g_69_1190

seq1  GAATTCATTCAGCTTACAACTCCAGGTTATAAGTCCATCATTGTAGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAGCTTACAACTCCAGGTTATAAGTCCATCATTGTAGGGAA  50

seq1  GCCAAGGGAATAACTTGAAGCAACTACTCACATCCACAGTCAAAAGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGGAATAACTTGAAGCAACTACTCACATCCACAGTCAAAAGCAGA  100

seq1  GAGAGGGAATGCACGTGTGCCTGCCCTCAGTTCTTCTTCTCCATTTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAATGCACGTGTGCCTGCCCTCAGTTCTTCTTCTCCATTTCTCA  150

seq1  ACGGGAACCCCCAACTCATGGAACTGTGCCACGATGGGCAGCTTTTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGAACCCCCAACTCATGGAACTGTGCCACGATGGGCAGCTTTTCTCT  200

seq1  CCTGAGTTCAATCAAGGCAATCCCTCACAGACATGTCCATAGGCCAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTCAATCAAGGCAATCCCTCACAGACATGTCCATAGGCCAACCA  250

seq1  AATCTTGATCACCTCCATTGAGTCACTTTTCCCAGGCGGTTCTCCAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGATCACCTCCATTGAGTCACTTTTCCCAGGCGGTTCTCCAATGT  300

seq1  GTCAAGCTGGCAATTGGAACTAACCATCACAATTATTTGCCTTTCTACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCTGGCAATTGGAACTAACCATCACAATTATTTGCCTTTCTACCA  350

seq1  ACGGGAAACAAATAATTTCATAAATCAGGGTCCAGGCAACAGCAGGAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGAAACAAATAATTTCATAAATCAGGGTCCAGGCAACAGCAGGAAGC  400

seq1  TGCGGCATCGTGCCGTGGTTATGAATGCTTTTACTCTGAACGACAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGCATCGTGCCGTGGTTATGAATGCTTTTACTCTGAACGACAAAGAA  450

seq1  CACAAGGTATTTTCAGAAAATTACTTTATCTCCTTGCCATTACAAATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGTATTTTCAGAAAATTACTTTATCTCCTTGCCATTACAAATTAT  500

seq1  TCTATTAAACTATGAAACACTCTTCTCTCAGACTACCTACTGTGTATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAAACTATGAAACACTCTTCTCTCAGACTACCTACTGTGTATTTG  550

seq1  TTCATAAGAAGCTCACCTCATAAGGAGTAAGTTCAAACAAATATTTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAGAAGCTCACCTCATAAGGAGTAAGTTCAAACAAATATTTGAAA  600

seq1  TCTCCCTAAGTTCATAAGCGTATTAACTTCTGTCTTCCAAACAAGCTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTAAGTTCATAAGCGTATTAACTTCTGTCTTCCAAACAAGCTTTA  650

seq1  GTAACTAGAAAATGCAAAGAATGGGTTTTCACCTACTAAAAAATTGAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTAGAAAATGCAAAGAATGGGTTTTCACCTACTAAAAAATTGAGGG  700

seq1  AAGGAAAAGTTGGCTCAGCAATTAAGAACTCCTGGATGGCACTCTTCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAGTTGGCTCAGCAATTAAGAACTCCTGGATGGCACTCTTCATC  750

seq1  CAGGGGACTCAAGTTCAATTCTCAACACCCTCCCCAAGGAGCTCACAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGACTCAAGTTCAATTCTCAACACCCTCCCCAAGGAGCTCACAGCC  800

seq1  CACAGTAACTCCAGCCCTATAGGATGTGACACCCCGACGCCCTCTTCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAACTCCAGCCCTATAGGATGTGACACCCCGACGCCCTCTTCTGG  850

seq1  TGTCTGTGGGCACTGCACTCACATGCACACGCACACAAAAATAAAAATTG  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTCTGTGGGCACTGCACTCACATGCACACGCACAC-AAAATAAAAATTG  899

seq1  AATCTTAACAATTTTAATAAATACTTGCATTTAATGCTAGCAGACTTATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AATCTTAACAATTTTAATAAATACTTGCATTTAATGCTAGCAGACTTAT-  948

seq1  ATTGTGTAATATGGAGAACACACCTTTTCTCTGTGGTCAGTAAATGCATA  1000
      || ||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGGTGTAATATGGAGAACACACCTTTTCTCTGTGGTCAGTAAATGCAAA  998

seq1  CTGTCTGTCACAGTGGGTGTAGCTCACCTTCTTCCACACTCCCTAATGAA  1050
      ||||||||| |||||||||||||||| |||| |||||||| |||||||||
seq2  CTGTCTGTCCCAGTGGGTGTAGCTCA-CTTC-TCCACACT-CCTAATGAA  1045

seq1  ACAAAAATAATACTTTAAAACACTCTCCCCATCTCCACGGCAAATGATAA  1100
      |||||||| |||  |||||||| ||| ||||||||||| ||||||||| |
seq2  ACAAAAAT-ATAACTTAAAACA-TCT-CCCATCTCCAC-GCAAATGAT-A  1090

seq1  ATCAGTTGTAATAGGTACATATCTGCCAAGAACTCCGA  1138
      |||||||||||   ||||||| ||||  ||||||||||
seq2  ATCAGTTGTAA---GTACATA-CTGC--AGAACTCCGA  1122