BAC Information

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BAC

Clone NameB6Ng01-115M24
Chromosome11 (Build37)
Map Location 97,711,182 - 97,829,683
singlet/doubletdoublet
Overlap geneFbxo47, Plxdc1
Upstream geneCopz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik
Downstream geneArl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115M24.bB6Ng01-115M24.g
ACCDH920980DH920981
length1,1081,146
definitionDH920980|Mus musculus domesticus DNA, BAC clone: B6Ng01-115M24, 5' end.DH920981|Mus musculus domesticus DNA, BAC clone: B6Ng01-115M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,828,563 - 97,829,683)(97,711,182 - 97,712,314)
sequence
gaattcctccttccactatatggttcttgggaattgaacgtccacctcag
gctcagtgcctttacccactgagccgtctggctagctcagatccagaaca
gacagagggagccacctgcctaaggtcacgcatctaatgagtggcagagt
ccagacaagaaggccagttctgtttcactgcttcactggccaggtctcag
ccaccatctccttaaggatgggtgatgtgctggcaaagccttttttttct
ccttttaaatctgcctttaaaaaaaccttcccagcacaagtagccagaac
caagtaccactggttttgtgcagatgcaggctcaggttctgcaggtctgg
ggttaacccaggacgatgcactttctttcttttttagtttatttaagagt
ttctctctttagctctggctgtcctggaactcactctgtagcttaagctg
gccttgagctggtagcaaccctcctgtctcagcttcccaagtactaagat
tatacaataagccctccgtatatggcttatttatttatttatctatttat
ttatttatttttggagacaggatctcactgtgtagtcttggccagcatga
aatttaacatgtagcctagacttccttgaactcacagagatctatctacc
tcagcctcctgaagccctgtctgccacagaactcactttgtagaccaggc
tagcctgaactcagagatctgcctacctctgcctcccaagtgttgaaggc
atgtgccaccatgcccagcagagctctgcacttgtaacagtgcttctaag
tgactttgttgctgctgttccaggaatgtttcaaatagctggatctaaaa
tacattctgggtgtttttgtaacccttgctgacaggggcaattgggagac
cctttgagcagcacttactggttggccccagctgcctaaatgctgtctga
cagcctggccagtcaagctctctgtcagctcagctctgcggtgcccctgg
ttgcttgtccagcatgcatacagcactggctggcaggttatagactgatt
gtgaggctcagctggggtttctttccagaaacattctagctcagctagta
aatacagc
gaattctatatcttcatccaaaggctgctagtggaagactgacttccagg
cacctagggtgagagtattaagcccacacccacagtggcacacctactcc
aaccaggtcacacctatattccaacagggccacacctccaaatggtgcca
ctccctggtacaagaatataaaaaccatcacacagcttaaataaatataa
gtacactgcaaaagttcaatgaatggaacaagaaactctgaacacattag
aaatatttccagaaagccgggaatggtggcgcacacctttaatcccagca
ctcaggaggcagaggcagacggatttctcagttcgaggccagcctggtct
acaaagtgagttccaggacagccagggcctcacagagaaaccctgtctcg
aaaaaaaaaaaaaaaaaagaaaagaaatatttccagattaaacttaattt
taacttaattttattagaatgaataagatattaaagttgaacaaatacaa
tattagttttcaaagatgtttagcacaacacaatgcgcttgagataacac
tgcccacagctagtggggtgctaatgcagtttccagtacgaaaggaggct
gtcaagggcaagtacaaatctgcaatcacgtgactgagtactattcccag
gaggtttgttgaccttgaagctaaccacacacagagggtagtgtttactt
ttcagacatgaactggttctgtcattacaccttctactgggcaccttcct
gcttgctctgttctccaaaggtgaacagtttcccctaagcaataaactgt
ttattaacaaagacctaggagtgcaaacagagtcgaccaggcgcacagga
taaaggaacttctaagctggtgccggatgaacagtgctgaactttgccac
tgggaacacacacgccaccacttagggactaggaggacagaatggcatca
ccacaacagtggtgctgctacaggtgcatcattttacattaactagctca
tcacagatataaacttcagttcctaaaatgagtggcaacatggtatgttg
gtggttacgagaatataccataaacagcagtgcagtgaattctcatttgg
cttttccctcctagtaaagtaatccactcacagaggtaaaggacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_97828563_97829683
seq2: B6Ng01-115M24.b_48_1155 (reverse)

seq1  GCTGTATTTACCTTGGCTGAGCTTAGGATGTTTCTGGAAAAGAAACCCCA  50
      |||||||||||  | ||||||| ||| |||||||||| ||||||||||||
seq2  GCTGTATTTAC--TAGCTGAGC-TAGAATGTTTCTGG-AAAGAAACCCCA  46

seq1  GCTGAGCCCTCACAATCAGTCTATTACCTGCCAGCCAGTTGGCTGGTATG  100
      |||||| ||||||||||||||||| ||||||||||||||  ||| |||||
seq2  GCTGAG-CCTCACAATCAGTCTATAACCTGCCAGCCAGT--GCT-GTATG  92

seq1  CATGCTGGGCAAGCAACCAGGGGCACCCGCAGAGCTGAGCTGACAGGAGA  150
      |||||||| |||||||||||||||| ||||||||||||||||||| ||||
seq2  CATGCTGGACAAGCAACCAGGGGCA-CCGCAGAGCTGAGCTGACA-GAGA  140

seq1  GCTTGACTGGCCAGGCTTGTCAGGACAGCATTTAGGCAGCTGGGGCCAAC  200
      |||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  GCTTGACTGGCCAGGC-TGTCA-GACAGCATTTAGGCAGCTGGGGCCAAC  188

seq1  CAGTAAAGTGCTGCTCAAAGGGTCTCCCAATTGCCCCTGTCAGCAAGGGT  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGT-AAGTGCTGCTCAAAGGGTCTCCCAATTGCCCCTGTCAGCAAGGGT  237

seq1  TACAAAAACACCCAGAATGTATTTTAGATCCAGCTATTTGAAACATTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAACACCCAGAATGTATTTTAGATCCAGCTATTTGAAACATTCCT  287

seq1  GGAACAGCAGCAACAAAGTCACTTAGAAGCACTGTTACAAGTGCAGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGCAGCAACAAAGTCACTTAGAAGCACTGTTACAAGTGCAGAGCT  337

seq1  CTGCTGGGCATGGTGGCACATGCCTTCAACACTTGGGAGGCAGAGGTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGGCATGGTGGCACATGCCTTCAACACTTGGGAGGCAGAGGTAGG  387

seq1  CAGATCTCTGAGTTCAGGCTAGCCTGGTCTACAAAGTGAGTTCTGTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCTGAGTTCAGGCTAGCCTGGTCTACAAAGTGAGTTCTGTGGCA  437

seq1  GACAGGGCTTCAGGAGGCTGAGGTAGATAGATCTCTGTGAGTTCAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGCTTCAGGAGGCTGAGGTAGATAGATCTCTGTGAGTTCAAGGAA  487

seq1  GTCTAGGCTACATGTTAAATTTCATGCTGGCCAAGACTACACAGTGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGGCTACATGTTAAATTTCATGCTGGCCAAGACTACACAGTGAGAT  537

seq1  CCTGTCTCCAAAAATAAATAAATAAATAGATAAATAAATAAATAAGCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCCAAAAATAAATAAATAAATAGATAAATAAATAAATAAGCCAT  587

seq1  ATACGGAGGGCTTATTGTATAATCTTAGTACTTGGGAAGCTGAGACAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGGAGGGCTTATTGTATAATCTTAGTACTTGGGAAGCTGAGACAGGA  637

seq1  GGGTTGCTACCAGCTCAAGGCCAGCTTAAGCTACAGAGTGAGTTCCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCTACCAGCTCAAGGCCAGCTTAAGCTACAGAGTGAGTTCCAGGA  687

seq1  CAGCCAGAGCTAAAGAGAGAAACTCTTAAATAAACTAAAAAAGAAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGAGCTAAAGAGAGAAACTCTTAAATAAACTAAAAAAGAAAGAAA  737

seq1  GTGCATCGTCCTGGGTTAACCCCAGACCTGCAGAACCTGAGCCTGCATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATCGTCCTGGGTTAACCCCAGACCTGCAGAACCTGAGCCTGCATCT  787

seq1  GCACAAAACCAGTGGTACTTGGTTCTGGCTACTTGTGCTGGGAAGGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAACCAGTGGTACTTGGTTCTGGCTACTTGTGCTGGGAAGGTTTT  837

seq1  TTTAAAGGCAGATTTAAAAGGAGAAAAAAAAGGCTTTGCCAGCACATCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGGCAGATTTAAAAGGAGAAAAAAAAGGCTTTGCCAGCACATCAC  887

seq1  CCATCCTTAAGGAGATGGTGGCTGAGACCTGGCCAGTGAAGCAGTGAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTAAGGAGATGGTGGCTGAGACCTGGCCAGTGAAGCAGTGAAAC  937

seq1  AGAACTGGCCTTCTTGTCTGGACTCTGCCACTCATTAGATGCGTGACCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGGCCTTCTTGTCTGGACTCTGCCACTCATTAGATGCGTGACCTT  987

seq1  AGGCAGGTGGCTCCCTCTGTCTGTTCTGGATCTGAGCTAGCCAGACGGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTGGCTCCCTCTGTCTGTTCTGGATCTGAGCTAGCCAGACGGCT  1037

seq1  CAGTGGGTAAAGGCACTGAGCCTGAGGTGGACGTTCAATTCCCAAGAACC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGTAAAGGCACTGAGCCTGAGGTGGACGTTCAATTCCCAAGAACC  1087

seq1  ATATAGTGGAAGGAGGAATTC  1121
      |||||||||||||||||||||
seq2  ATATAGTGGAAGGAGGAATTC  1108

seq1: chr11_97711182_97712314
seq2: B6Ng01-115M24.g_70_1215

seq1  GAATTCTATATCTTCATCCAAAGGCTGCTAGTGGAAGACTGACTTCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATCTTCATCCAAAGGCTGCTAGTGGAAGACTGACTTCCAGG  50

seq1  CACCTAGGGTGAGAGTATTAAGCCCACACCCACAGTGGCACACCTACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGGGTGAGAGTATTAAGCCCACACCCACAGTGGCACACCTACTCC  100

seq1  AACCAGGTCACACCTATATTCCAACAGGGCCACACCTCCAAATGGTGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGTCACACCTATATTCCAACAGGGCCACACCTCCAAATGGTGCCA  150

seq1  CTCCCTGGTACAAGAATATAAAAACCATCACACAGCTTAAATAAATATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGGTACAAGAATATAAAAACCATCACACAGCTTAAATAAATATAA  200

seq1  GTACACTGCAAAAGTTCAATGAATGGAACAAGAAACTCTGAACACATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTGCAAAAGTTCAATGAATGGAACAAGAAACTCTGAACACATTAG  250

seq1  AAATATTTCCAGAAAGCCGGGAATGGTGGCGCACACCTTTAATCCCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTCCAGAAAGCCGGGAATGGTGGCGCACACCTTTAATCCCAGCA  300

seq1  CTCAGGAGGCAGAGGCAGACGGATTTCTCAGTTCGAGGCCAGCCTGGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGGCAGAGGCAGACGGATTTCTCAGTTCGAGGCCAGCCTGGTCT  350

seq1  ACAAAGTGAGTTCCAGGACAGCCAGGGCCTCACAGAGAAACCCTGTCTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGAGTTCCAGGACAGCCAGGGCCTCACAGAGAAACCCTGTCTCG  400

seq1  AAAAAAAAAAAAAAAAAAGAAAAGAAATATTTCCAGATTAAACTTAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAGAAAAGAAATATTTCCAGATTAAACTTAATTT  450

seq1  TAACTTAATTTTATTAGAATGAATAAGATATTAAAGTTGAACAAATACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAATTTTATTAGAATGAATAAGATATTAAAGTTGAACAAATACAA  500

seq1  TATTAGTTTTCAAAGATGTTTAGCACAACACAATGCGCTTGAGATAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTTTTCAAAGATGTTTAGCACAACACAATGCGCTTGAGATAACAC  550

seq1  TGCCCACAGCTAGTGGGGTGCTAATGCAGTTTCCAGTACGAAAGGAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACAGCTAGTGGGGTGCTAATGCAGTTTCCAGTACGAAAGGAGGCT  600

seq1  GTCAAGGGCAAGTACAAATCTGCAATCACGTGACTGAGTACTATTCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGGCAAGTACAAATCTGCAATCACGTGACTGAGTACTATTCCCAG  650

seq1  GAGG-TTGTTGACCTTGAAGCTAACCACACACAGAGGGTAGTGTTTACTT  699
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTGTTGACCTTGAAGCTAACCACACACAGAGGGTAGTGTTTACTT  700

seq1  TTCAGACATGAACTGGTTCTGTCATTACACCTTCTACTGGGCACC-TCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCAGACATGAACTGGTTCTGTCATTACACCTTCTACTGGGCACCTTCCT  750

seq1  GCTTGCTCTGTTCTCCAAAGGTGAACAG-TTCCCCT-AGCAATAAACTG-  795
      |||||||||||||||||||||||||||| ||||||| |||||||||||| 
seq2  GCTTGCTCTGTTCTCCAAAGGTGAACAGTTTCCCCTAAGCAATAAACTGT  800

seq1  TTATTAACAAAGACCTAGGAGTGCAAACAGAGTCGACCAGGCGCACAGGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAACAAAGACCTAGGAGTGCAAACAGAGTCGACCAGGCGCACAGGA  850

seq1  T-AAGGAACTTCTAAGCTGGTGCCGGATGAACAGTGCTGAACTTTGCCAC  894
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAACTTCTAAGCTGGTGCCGGATGAACAGTGCTGAACTTTGCCAC  900

seq1  T-GGAACACACACGCCACCACTTAGGGACTAAGAGGACAG-ATGGCATCA  942
      | ||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  TGGGAACACACACGCCACCACTTAGGGACTAGGAGGACAGAATGGCATCA  950

seq1  CCACAACAGT-GTGCTGCTACAAGTGCATCATTTCACAGTTAACATAG-T  990
      |||||||||| ||||||||||| ||||||||||| ||| ||||| ||| |
seq2  CCACAACAGTGGTGCTGCTACAGGTGCATCATTTTACA-TTAAC-TAGCT  998

seq1  CATCACAAGATATAAACTTCAGTTCCTAAAATGAGTGGCAACATGGTATG  1040
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAC-AGATATAAACTTCAGTTCCTAAAATGAGTGGCAACATGGTATG  1047

seq1  TT-GTGTGTAC-AGAA-ATAACAATAACAGCAGTGCAGTGA--TGTCA-T  1084
      || |||  ||| |||| ||| ||  ||||||||||||||||  | ||| |
seq2  TTGGTGGTTACGAGAATATACCATAAACAGCAGTGCAGTGAATTCTCATT  1097

seq1  TGGC-TTTCCCTTCTAGTAAAAGGAGATCCACACACAGAGG-AAAAGACA  1132
      |||| ||||||| ||||||||  |  |||||| |||||||| ||| ||||
seq2  TGGCTTTTCCCTCCTAGTAAA--GTAATCCACTCACAGAGGTAAAGGACA  1145

seq1  T  1133
      |
seq2  T  1146