BAC Information

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BAC

Clone NameB6Ng01-116P04
Chromosome11 (Build37)
Map Location 73,886,701 - 73,887,279
singlet/doubletsinglet
Overlap geneOTTMUSG00000006163
Upstream gene1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399
Downstream geneLOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116P04.bB6Ng01-116P04.g
ACCDH921817DH921818
length1,039637
definitionDH921817|Mus musculus domesticus DNA, BAC clone: B6Ng01-116P04, 5' end.DH921818|Mus musculus domesticus DNA, BAC clone: B6Ng01-116P04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagtcataagattgcaatgcaggcagctctaacttctgcaccat
ttctctggtttacaatacatattgtttaatgccatatggtagactacgat
tatagaagtttcctaacacatgaacatataaaatgctgtttaactgacat
tgccacaaattagaacagacaatacaaagctaaatttcatattccactat
acatagcacgtagtacaagaaatgggttgcaacttttagaattataggcc
aaaagacctatattccactgaaatagcacaggtaattccaaaacacattt
atttgcactccaaacctgaggatatgtggccactgccaaagacaataaat
acataaagcagcagaaatattgagctgcaaattaaactggattttcatgc
ctactgatttacagtcatagtatatttatgtagtacttggccataggagg
acaaaattaattatttgtctcacccagctatttaatctgtgatgtgaaat
gctgaccttactgtaagatatgctcacttattgtaaattataaatgcttt
gataatacctaccactgattggcattttggtggctctccaagttaaaact
atatctgacactgtttctgcagcccacaatctgagactaaacagtttcta
ggtcctatattaaaatctactattatttctacaaataaaatcataataat
aagatacctaaagatatattgcttttccagtagatctgtgcatccctcaa
ccttcaatagagaagcttaatatgtaaggcaacaactgggaaagttcaga
aattgagagacattgtagcattcggtcttatgtagctatctttatcacat
ctctcctatcaatgctcaggggccaatgcagaagatgagacagaaaggat
tgtaaagggcataggtagtgaatgacactagataaacaacatctccacac
acaagagtaatacccatataactcacggagaatgtgacagcacccaccag
atcatacagttcaaagcagataaaaccccagctttgaga
gaattctgtcttgggtattctgaccttctgggctaatacccacttatcag
tgagtgcatatcttgtgtgttcttttgtgattgggttacctcacttagga
tgaaatcctccagatccatccatttgcctaagaatttaataaagtcatta
tttttaatagctgtgtactgcccaacctggggatgcatcccacatacaac
caccaaacccagacactaatgtggatgccaagaagaacttgctgataaga
acctgatatagctgtctcctgagaggcttgccagtgcctgaaaaacagaa
gtggatgctcacagccatccattggatggagcacagggttcccaatgaag
gagctagaaaaagtacccaaggagctgaagggggttgcagccccatagga
agaacaacaatatgaactatccagtaaccccagagcttcctgggactaaa
ccaccaaccaaagaaaacacatggtgggacccatggttctagctgcatat
gtagcagagtatggcttagtgagtcatcaatggaaagagagttccttggt
tctgtgaaggttctatgccccagtatagggaaatgccagggccaggaagc
aggagttggtggattggtgagaaggatgatggggtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_73886701_73887279
seq2: B6Ng01-116P04.b_46_624 (reverse)

seq1  CAAAATGCCAATCAGTGGTAGGTATTATCAAAGCATTTATAATTTACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGCCAATCAGTGGTAGGTATTATCAAAGCATTTATAATTTACAAT  50

seq1  AAGTGAGCATATCTTACAGTAAGGTCAGCATTTCACATCACAGATTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGCATATCTTACAGTAAGGTCAGCATTTCACATCACAGATTAAAT  100

seq1  AGCTGGGTGAGACAAATAATTAATTTTGTCCTCCTATGGCCAAGTACTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGTGAGACAAATAATTAATTTTGTCCTCCTATGGCCAAGTACTAC  150

seq1  ATAAATATACTATGACTGTAAATCAGTAGGCATGAAAATCCAGTTTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATACTATGACTGTAAATCAGTAGGCATGAAAATCCAGTTTAATT  200

seq1  TGCAGCTCAATATTTCTGCTGCTTTATGTATTTATTGTCTTTGGCAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTCAATATTTCTGCTGCTTTATGTATTTATTGTCTTTGGCAGTGG  250

seq1  CCACATATCCTCAGGTTTGGAGTGCAAATAAATGTGTTTTGGAATTACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATATCCTCAGGTTTGGAGTGCAAATAAATGTGTTTTGGAATTACCT  300

seq1  GTGCTATTTCAGTGGAATATAGGTCTTTTGGCCTATAATTCTAAAAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTATTTCAGTGGAATATAGGTCTTTTGGCCTATAATTCTAAAAGTTG  350

seq1  CAACCCATTTCTTGTACTACGTGCTATGTATAGTGGAATATGAAATTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCATTTCTTGTACTACGTGCTATGTATAGTGGAATATGAAATTTAG  400

seq1  CTTTGTATTGTCTGTTCTAATTTGTGGCAATGTCAGTTAAACAGCATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTATTGTCTGTTCTAATTTGTGGCAATGTCAGTTAAACAGCATTTT  450

seq1  ATATGTTCATGTGTTAGGAAACTTCTATAATCGTAGTCTACCATATGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTCATGTGTTAGGAAACTTCTATAATCGTAGTCTACCATATGGCA  500

seq1  TTAAACAATATGTATTGTAAACCAGAGAAATGGTGCAGAAGTTAGAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAATATGTATTGTAAACCAGAGAAATGGTGCAGAAGTTAGAGCTG  550

seq1  CCTGCATTGCAATCTTATGACTTGAATTC  579
      |||||||||||||||||||||||||||||
seq2  CCTGCATTGCAATCTTATGACTTGAATTC  579