BAC Information

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BAC

Clone NameB6Ng01-118D07
Chromosome11 (Build37)
Map Location 96,190,863 - 96,292,993
singlet/doubletdoublet
Overlap geneHoxb3, Hoxb2, Hoxb1, LOC100040242
Upstream gene5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4
Downstream geneOTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118D07.bB6Ng01-118D07.g
ACCDH922746DH922747
length1701,003
definitionDH922746|Mus musculus domesticus DNA, BAC clone: B6Ng01-118D07, 5' end.DH922747|Mus musculus domesticus DNA, BAC clone: B6Ng01-118D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,190,863 - 96,191,032)(96,292,326 - 96,292,993)
sequence
acaccccaggagccttccttcgacctattgaaacaaagaaagtttcttgg
gcagtgagagtcagtctctgtctctccctgtctgtctctctccctctctc
cccctgtctctctttttctcactttctttctcgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgt
gaattctgggagcagtgttagagacactttccttggaatgtattaccttg
caagcggtggcttcctgagtcattacagccagtggatattaggtcttttt
ctttccttaccaattacatttaccatcctactgtggaactgagagaggcc
aagaaacccaagttagaaccccaccttctggtggcgcatgttctgtgtct
tcattcactcattcaacagaattcattaagcacaaactatgtgtcaggct
ttgttaaaggagctggggtaatagttgtaaataaaagagacaaagtctct
gttctgtgaatacatgtctgtctggggaccaaaaatattatatatattaa
tattatattaaattatattaaattaaattatatatattaatattaaaata
ggtgtatatgtttagttcatgtgtgtgtgtattttgcatgtatgtacaca
tgtgtactgtgtgcatgtctgttacccttgaaggccagaagaaggcatca
gaaccccctaaaactagagttacagatggttgtgagccatcatgtgggtg
ttgaaatttgaaccatggtcctctgctatttcagtcagtactcttaacca
ctgagccatctctccagctcgtatggagacaaaagcagaaaatagcaaca
ataataaaaataattatagacagacaaatatctgaagaggaaggcagaca
tagaaaagggtacttctgtgttagggaccaggggacctgagctccagtcc
tgtttgctttgcctaagactcttctgaggtaacacaagttatttaacctc
attcaatttcattttttaatgatttctttttttttttaaattggcattgg
tgatttgcctgcttgtacaagaatgttgccctggaactggagttagacag
ttgtgagctgccatgtggggtgctcagaattggacccagatcctctggag
agcagcagtgcttcttaacttctgagcatctctcagcccccaacttcatt
ctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_96190863_96191032
seq2: B6Ng01-118D07.b_54_223

seq1  ACACCCCAGGAGCCTTCCTTCGACCTATTGAAACAAAGAAAGTTTCTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCAGGAGCCTTCCTTCGACCTATTGAAACAAAGAAAGTTTCTTGG  50

seq1  GCAGTGAGAGTCAGTCTCTGTCTCTCCCTGTCTGTCTCTCTCCCTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGAGAGTCAGTCTCTGTCTCTCCCTGTCTGTCTCTCTCCCTCTCTC  100

seq1  CCCCTGTCTCTCTTTTTCTCACTTTCTTTCTCGTGTGTGTGTGTGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTCTCTCTTTTTCTCACTTTCTTTCTCGTGTGTGTGTGTGTGTGT  150

seq1  GTGTGTGTGTGTGTGTGTGT  170
      ||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGT  170

seq1: chr11_96292326_96292993
seq2: B6Ng01-118D07.g_69_736 (reverse)

seq1  TATAATTATTTTTATTATTGTTGCTATTTTCTGCTTTTGTCTCCATACGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTATTTTTATTATTGTTGCTATTTTCTGCTTTTGTCTCCATACGA  50

seq1  GCTGGAGAGATGGCTCAGTGGTTAAGAGTACTGACTGAAATAGCAGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGAGATGGCTCAGTGGTTAAGAGTACTGACTGAAATAGCAGAGGA  100

seq1  CCATGGTTCAAATTTCAACACCCACATGATGGCTCACAACCATCTGTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTTCAAATTTCAACACCCACATGATGGCTCACAACCATCTGTAAC  150

seq1  TCTAGTTTTAGGGGGTTCTGATGCCTTCTTCTGGCCTTCAAGGGTAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTTTAGGGGGTTCTGATGCCTTCTTCTGGCCTTCAAGGGTAACAG  200

seq1  ACATGCACACAGTACACATGTGTACATACATGCAAAATACACACACACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACACAGTACACATGTGTACATACATGCAAAATACACACACACAT  250

seq1  GAACTAAACATATACACCTATTTTAATATTAATATATATAATTTAATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAACATATACACCTATTTTAATATTAATATATATAATTTAATTTA  300

seq1  ATATAATTTAATATAATATTAATATATATAATATTTTTGGTCCCCAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTTAATATAATATTAATATATATAATATTTTTGGTCCCCAGACA  350

seq1  GACATGTATTCACAGAACAGAGACTTTGTCTCTTTTATTTACAACTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTATTCACAGAACAGAGACTTTGTCTCTTTTATTTACAACTATTA  400

seq1  CCCCAGCTCCTTTAACAAAGCCTGACACATAGTTTGTGCTTAATGAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCTCCTTTAACAAAGCCTGACACATAGTTTGTGCTTAATGAATTC  450

seq1  TGTTGAATGAGTGAATGAAGACACAGAACATGCGCCACCAGAAGGTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAATGAGTGAATGAAGACACAGAACATGCGCCACCAGAAGGTGGGG  500

seq1  TTCTAACTTGGGTTTCTTGGCCTCTCTCAGTTCCACAGTAGGATGGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACTTGGGTTTCTTGGCCTCTCTCAGTTCCACAGTAGGATGGTAAA  550

seq1  TGTAATTGGTAAGGAAAGAAAAAGACCTAATATCCACTGGCTGTAATGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTGGTAAGGAAAGAAAAAGACCTAATATCCACTGGCTGTAATGAC  600

seq1  TCAGGAAGCCACCGCTTGCAAGGTAATACATTCCAAGGAAAGTGTCTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGCCACCGCTTGCAAGGTAATACATTCCAAGGAAAGTGTCTCTA  650

seq1  ACACTGCTCCCAGAATTC  668
      ||||||||||||||||||
seq2  ACACTGCTCCCAGAATTC  668