BAC Information

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BAC

Clone NameB6Ng01-119H15
Chromosome11 (Build37)
Map Location 70,193,427 - 70,334,795
singlet/doubletdoublet
Overlap genePelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik
Upstream geneCyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466
Downstream genePsmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119H15.bB6Ng01-119H15.g
ACCDH923678DH923679
length1,1451,108
definitionDH923678|Mus musculus domesticus DNA, BAC clone: B6Ng01-119H15, 5' end.DH923679|Mus musculus domesticus DNA, BAC clone: B6Ng01-119H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,333,637 - 70,334,795)(70,193,427 - 70,194,540)
sequence
gaattccttactgagctaacgtgactatgaaagtactattttagaagaaa
gcattagaaacagtctgaagctgataggtgtgctatgcctagttgacatc
caaatggaaatgccaaatatccagctggatggatagaaatatatagttca
gaaaaaaagtagatttgaggtacgtttgggagttagtctaagttagtcta
ggaaatgctttatgtctttcacattcactagtacggaagtgaccaaggag
acctttgtggagtgcctgtttggtgagaggcatggtgcacgggctttagg
ttggagacagaacacagaaataaatgtacttttggtggagggaagtagca
ctcaggcgggacatgctgcgttggctgtgtggagggcagatctggactga
gacttggtaagcgctggcaactgaagccatggagcagctgaaatgagctc
aggggaatatgagtccttcagatgcaaagagcagggataacaggtcttcc
cacaccctcccccagcccttaagctagctctccagttatcatacataacg
ccggatgtcgacagctactaaagcattctttattcttcattgcttcttcc
agcttccagaggctgaagatgagaggatctcacacatcactgagactgcc
ctgctgggggtgggccttaactgtggtgacttcactaaagaggaccgcta
gctactctcaggccgccggtaaccctgagtatgtacatcccttcccagaa
atgcctttctggtcggtctcttgatgccgcggccatcaagccagctggag
caggccgtggccggccagcaggccctgggtacgattgtacacatcctcca
ggacgccggcggcccgggccagagcaacccgcgcgtccgcctctcctgtt
ccgggacacgccagctggagcaggcgaccgcgactcgggagggccagatc
gccaggcgagcggcctgacgataagccatggatggtgcggggcaagggcg
tgctgtaggcttccccgcactgcatgccgcatctggacctccagcgtcct
gtcgccaccctgtgagcagagctgggacagcgctagcgcgcgatgtcaca
aagtagcgtcgaaagcccgagaccgctgaatgccaggttcggttc
gaattcccaaaagctgaagccaaaatccatagagaactcacaggaaggaa
agagttttacctaacagacacaccagagatccttgcctgcacttggacaa
ggccctggaccttaaactgatgccagtcaggccatgactttgagaaggaa
ttgcacatagtttgcctgtggcagggatgtgatggggtcagagacaggac
tgtgacagatcgttttccatctatgaccacgtatatagcatctgtgtccc
cttacctgatgccgatgcgtctctcactgaggaggctctatctccccttc
ttacccgagtaagaccttttgacttccagccagtatacaacagaaggaat
gctacgtgatttctggggtcagtcagcaatcccctctatcttgttgtctt
attatgttcactcttagaatgaggacattcctagtcatcatgcaatgggg
acacacagactctctatcaggaacatatgaacgttccagctgacaatact
aacttaagatcccagtttaatgccagtatcagtcatcagatctgtgaggt
aggaaccctctgagttgactgtgcccttggctactgtgagcacagcaaca
tgagagtccccaggtgagggaacttagctgagccccaggaccatcagaac
tgtaagacaatgattaaataactgtgaaatttttaagtcattacatttta
ggatgacttatcacaaaataactagaacaggcatacagaagaaaaaaaaa
caggaagcaagagaaaatgtagagagaggagcaaacctgcttcttattgc
aaaggtgtggacataaaccacaggccccttggcttgcaggagacagattc
caaacacaagatatggcagctgcacacagagctgtctgaccaatggtctt
acactctgtgggaggtagcagtatgtgaagcaactcgggtaaagtcaagt
gtgggggtagactgctttcccaggtcaccctttcatgttttccagccccc
acccaacaaaagttagagatttataggttgaacagtagtcatcatggaaa
gatggggtgttggggaacagtttccaaccaccaaaagagcaggaaccgtt
cccaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_70333637_70334795
seq2: B6Ng01-119H15.b_41_1185 (reverse)

seq1  GAACCGAACCTGGGCATTCAGCCGGGTCCTCGGGCTCTCGAACGCTACTT  50
      ||||||||||| ||||||||||  ||| |||||||| ||| ||||||| |
seq2  GAACCGAACCT-GGCATTCAGC--GGT-CTCGGGCTTTCG-ACGCTAC-T  44

seq1  TTGTTGCATCGCGCGCT-GCGCTGGTCCCAGCTCTGCCTCCACAGGGTGG  99
      ||||  ||||||||||| ||||| |||||||||||||   ||||||||||
seq2  TTGTGACATCGCGCGCTAGCGCT-GTCCCAGCTCTGC--TCACAGGGTGG  91

seq1  CGACAGGGACGCTTGGAGGTCCAGATGCGGGCACGCAGTGCGGGGAAGCC  149
      ||||| |||||| ||||||||||||||| |||| ||||||||||||||||
seq2  CGACA-GGACGC-TGGAGGTCCAGATGC-GGCATGCAGTGCGGGGAAGCC  138

seq1  TACAGCACCGCCCTGGCCCCGCACCATCCATGGCTTATCCGTCAGGCCGC  199
      ||||||| |||||| ||||||||||||||||||||||| |||||||||||
seq2  TACAGCA-CGCCCTTGCCCCGCACCATCCATGGCTTAT-CGTCAGGCCGC  186

seq1  TCGCCTGGCGATCTTGGCCCTCCCGAGTCGCGGTCGCCTGCTCCAGCTGG  249
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCGCCTGGCGATC-TGGCCCTCCCGAGTCGCGGTCGCCTGCTCCAGCTGG  235

seq1  CGTGTCCCGGAACAGGAGAGGCGGACGCGCGGGTTGCTCTGGCCCGGGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCCCGGAACAGGAGAGGCGGACGCGCGGGTTGCTCTGGCCCGGGCC  285

seq1  GCCGGCGTCCTGGAGGATGTGTACAATCGTACCCAGGGCCTGCTGGCCGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGCGTCCTGGAGGATGTGTACAATCGTACCCAGGGCCTGCTGGCCGG  335

seq1  CCACGGCCTGCTCCAGCTGGCTTGATGGCCGCGGCATCAAGAGACCGACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGCCTGCTCCAGCTGGCTTGATGGCCGCGGCATCAAGAGACCGACC  385

seq1  AGAAAGGCATTTCTGGGAAGGGATGTACATACTCAGGGTTACCGGCGGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGCATTTCTGGGAAGGGATGTACATACTCAGGGTTACCGGCGGCC  435

seq1  TGAGAGTAGCTAGCGGTCCTCTTTAGTGAAGTCACCACAGTTAAGGCCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTAGCTAGCGGTCCTCTTTAGTGAAGTCACCACAGTTAAGGCCCA  485

seq1  CCCCCAGCAGGGCAGTCTCAGTGATGTGTGAGATCCTCTCATCTTCAGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGCAGGGCAGTCTCAGTGATGTGTGAGATCCTCTCATCTTCAGCC  535

seq1  TCTGGAAGCTGGAAGAAGCAATGAAGAATAAAGAATGCTTTAGTAGCTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGCTGGAAGAAGCAATGAAGAATAAAGAATGCTTTAGTAGCTGT  585

seq1  CGACATCCGGCGTTATGTATGATAACTGGAGAGCTAGCTTAAGGGCTGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACATCCGGCGTTATGTATGATAACTGGAGAGCTAGCTTAAGGGCTGGG  635

seq1  GGAGGGTGTGGGAAGACCTGTTATCCCTGCTCTTTGCATCTGAAGGACTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTGTGGGAAGACCTGTTATCCCTGCTCTTTGCATCTGAAGGACTC  685

seq1  ATATTCCCCTGAGCTCATTTCAGCTGCTCCATGGCTTCAGTTGCCAGCGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCCCTGAGCTCATTTCAGCTGCTCCATGGCTTCAGTTGCCAGCGC  735

seq1  TTACCAAGTCTCAGTCCAGATCTGCCCTCCACACAGCCAACGCAGCATGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAAGTCTCAGTCCAGATCTGCCCTCCACACAGCCAACGCAGCATGT  785

seq1  CCCGCCTGAGTGCTACTTCCCTCCACCAAAAGTACATTTATTTCTGTGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCTGAGTGCTACTTCCCTCCACCAAAAGTACATTTATTTCTGTGTT  835

seq1  CTGTCTCCAACCTAAAGCCCGTGCACCATGCCTCTCACCAAACAGGCACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCAACCTAAAGCCCGTGCACCATGCCTCTCACCAAACAGGCACT  885

seq1  CCACAAAGGTCTCCTTGGTCACTTCCGTACTAGTGAATGTGAAAGACATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAGGTCTCCTTGGTCACTTCCGTACTAGTGAATGTGAAAGACATA  935

seq1  AAGCATTTCCTAGACTAACTTAGACTAACTCCCAAACGTACCTCAAATCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTCCTAGACTAACTTAGACTAACTCCCAAACGTACCTCAAATCT  985

seq1  ACTTTTTTTCTGAACTATATATTTCTATCCATCCAGCTGGATATTTGGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTCTGAACTATATATTTCTATCCATCCAGCTGGATATTTGGCA  1035

seq1  TTTCCATTTGGATGTCAACTAGGCATAGCACACCTATCAGCTTCAGACTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTTGGATGTCAACTAGGCATAGCACACCTATCAGCTTCAGACTG  1085

seq1  TTTCTAATGCTTTCTTCTAAAATAGTACTTTCATAGTCACGTTAGCTCAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATGCTTTCTTCTAAAATAGTACTTTCATAGTCACGTTAGCTCAG  1135

seq1  TAAGGAATTC  1159
      ||||||||||
seq2  TAAGGAATTC  1145

seq1: chr11_70193427_70194540
seq2: B6Ng01-119H15.g_69_1176

seq1  GAATTCCCAAAAGCTGAAGCCAAAATCCATAGAGAACTCACAGGAAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAAAGCTGAAGCCAAAATCCATAGAGAACTCACAGGAAGGAA  50

seq1  AGAGTTTTACCTAACAGACACACCAGAGATCCTTGCCTGCACTTGGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTTACCTAACAGACACACCAGAGATCCTTGCCTGCACTTGGACAA  100

seq1  GGCCCTGGACCTTAAACTGATGCCAGTCAGGCCATGACTTTGAGAAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGGACCTTAAACTGATGCCAGTCAGGCCATGACTTTGAGAAGGAA  150

seq1  TTGCACATAGTTTGCCTGTGGCAGGGATGTGATGGGGTCAGAGACAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACATAGTTTGCCTGTGGCAGGGATGTGATGGGGTCAGAGACAGGAC  200

seq1  TGTGACAGATCGTTTTCCATCTATGACCACGTATATAGCATCTGTGTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAGATCGTTTTCCATCTATGACCACGTATATAGCATCTGTGTCCC  250

seq1  CTTACCTGATGCCGATGCGTCTCTCACTGAGGAGGCTCTATCTCCCCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTGATGCCGATGCGTCTCTCACTGAGGAGGCTCTATCTCCCCTTC  300

seq1  TTACCCGAGTAAGACCTTTTGACTTCCAGCCAGTATACAACAGAAGGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCGAGTAAGACCTTTTGACTTCCAGCCAGTATACAACAGAAGGAAT  350

seq1  GCTACGTGATTTCTGGGGTCAGTCAGCAATCCCCTCTATCTTGTTGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACGTGATTTCTGGGGTCAGTCAGCAATCCCCTCTATCTTGTTGTCTT  400

seq1  ATTATGTTCACTCTTAGAATGAGGACATTCCTAGTCATCATGCAATGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTTCACTCTTAGAATGAGGACATTCCTAGTCATCATGCAATGGGG  450

seq1  ACACACAGACTCTCTATCAGGAACATATGAACGTTCCAGCTGACAATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGACTCTCTATCAGGAACATATGAACGTTCCAGCTGACAATACT  500

seq1  AACTTAAGATCCCAGTTTAATGCCAGTATCAGTCATCAGATCTGTGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAGATCCCAGTTTAATGCCAGTATCAGTCATCAGATCTGTGAGGT  550

seq1  AGGAACCCTCTGAGTTGACTGTGCCCTTGGCTACTGTGAGCACAGCAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCCTCTGAGTTGACTGTGCCCTTGGCTACTGTGAGCACAGCAACA  600

seq1  TGAGAGTCCCCAGGTGAGGGAACTTAGCTGAGCCCCAGGACCATCAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTCCCCAGGTGAGGGAACTTAGCTGAGCCCCAGGACCATCAGAAC  650

seq1  TGTAAGACAATGATTAAATAACTGTGAAATTTTTAAGTCATTACATTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGACAATGATTAAATAACTGTGAAATTTTTAAGTCATTACATTTTA  700

seq1  GGATGACTTATCACAAAATAACTAGAACAGGCATACAGAAGAAAAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACTTATCACAAAATAACTAGAACAGGCATACAGAAGAAAAAAAAA  750

seq1  CAGGAAGCAAGAGAAAATGTAGAGAGAGGAGCAAACCTGCTTCTTATTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGCAAGAGAAAATGTAGAGAGAGGAGCAAACCTGCTTCTTATTGC  800

seq1  AAAGGTGTTGACATAAACCACAGGCCCCTTGGCTTGCAGGAGACAGATTC  850
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTGGACATAAACCACAGGCCCCTTGGCTTGCAGGAGACAGATTC  850

seq1  CAAACACAAGATATGGCAGCTGCACACAGAGCTGTCTGACCAATGGTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACAAGATATGGCAGCTGCACACAGAGCTGTCTGACCAATGGTCTT  900

seq1  ACACTCTGT-GGAGGTAGCAGTATGTGAAGCAAC-CGGGTAAAGTCAAGT  948
      ||||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  ACACTCTGTGGGAGGTAGCAGTATGTGAAGCAACTCGGGTAAAGTCAAGT  950

seq1  GTGGGGGTAGACTGCTTCCCCAGGTCACCCTTCAATGTTTTCCCAGCCCC  998
      ||||||||||||||||| ||||||||||||||  ||||||| ||||||||
seq2  GTGGGGGTAGACTGCTTTCCCAGGTCACCCTTTCATGTTTT-CCAGCCCC  999

seq1  CACCCAACAAAAGTTAGAGATTTTATAGGTTGAACAGTAGTCATCATGGA  1048
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CACCCAACAAAAGTTAGAGA-TTTATAGGTTGAACAGTAGTCATCATGGA  1048

seq1  AAGAATGGGGTG-TGGGGAACAGTTCTCTAAGCAACCAAAAAGAGCCAGG  1097
      ||| |||||||| |||||||||||| || || ||  | ||||||| ||||
seq2  AAG-ATGGGGTGTTGGGGAACAGTT-TCCAACCA--CCAAAAGAG-CAGG  1093

seq1  AACTGTTACTCCAAAGG  1114
      ||| |||   |||||||
seq2  AACCGTT--CCCAAAGG  1108