BAC Information

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BAC

Clone NameB6Ng01-119J05
Chromosome10 (Build37)11 (Build37)
Map Location 88,342,864 - 88,342,907109,630,747 - 109,631,874
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneIgf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20
Downstream geneSlc5a8, Tmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119J05.bB6Ng01-119J05.g
ACCDH923752DH923753
length8391,124
definitionDH923752|Mus musculus domesticus DNA, BAC clone: B6Ng01-119J05, 5' end.DH923753|Mus musculus domesticus DNA, BAC clone: B6Ng01-119J05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,342,864 - 88,342,907)(109,630,747 - 109,631,874)
sequence
gaattcagtaagaatgttatctattcagtaacattcgaatttacttcgag
tagagacagtgaaacttattaggcattacaaagtacggagctagaatagc
tcagggctagtctgcagagtgattacttaggacagtagccagtctcaccc
aaacaagggaatacacaatggcctagctaataggtgggtttacaatgtaa
gagttagggaatcccactgagacaggaatcttcactacagccaggtatag
caggctatattgcatattagaagcaagttggtgaattcttctgacaaatg
gagattctccacagatacttaaaagaacagccaagttacactcatataag
aatttatcaaggcctaggaaataggggggttgttatattgcattattcat
gaggtctgctagagcagaaccccctggtgctagctttcacaaggctcaaa
ggagtagcacaaattgtgactaggatgtgaaatccttacctgtcattagc
tgaccctaagcagagctgttttaactttactgtaaatattacctggttcc
tataagtccttttgaagtcattcctttgttctgtgtcaggtaacttcaat
gtactttgcctgctgtgacatcctacccctttgttttctgtattatataa
gactggtgtacactttgtgacagtacattcagattctacacaatctctcc
tgtgattctgtctgtcattcattcgccgactccttgtccacctgcaaaca
gagacctgatctacgcagacagggaccaaaagggtctgcagcacttttct
cctcctcctcctcctcctcctcctcctctacctccttca
gaattccatccccagctcccaggatggagcgcacttgtaatcccagttcc
tggggaggcaaagacaggaggaagcttgtggctttctgggaagcaagtct
agtctaattggtgagcatcaggtcccagtgagaaactgtttcaaaaaaca
aggtgggccgggtgtggtggcacacgcctttaatcccagcacttgagagg
cagaggcaggcggatttctgagttcgaggccagcctggtctacagagtga
gttccaggacagtcggggccacacagagaaaccctgtctcaaaagaacaa
acaaacaaacaaacaaaacacaaaaaaccaaacaccccccccccccaaaa
accaaccaaacaaacaaacaaacaaaaaacaaacaaaaaacaaggtggac
aagttcttaggaacaatttactgtttgacttttggttttctcatgtaggt
gcacacacacacacacacacacacacacacacacacacacacacacgttt
ccagtatgcaaacgtttagggatgcattcaaactgtaagaacaaattatg
ctgtccctaggattctgggggctcaacagaatcaaggggcaatcaaatag
tggaagagaaaagtcaccagcacctttatagagaagacagcattcgagat
gaaactagatcctgagatcaaaaagccctgtgcccaggaaactcctgaca
aagtgaggtgtccctcaggcccaaccgccttcacagagctggccacgtca
gcctgattcctggaccgtcaggactcccgggaaagctgcttggaccttcg
gatgcggagaaatgacaaggcttttctatttaattacgggtttgttgtgg
gcagacccgcacagctgttgtcgaaatcaaagatcagttttttgagatat
tttaccacctgtgtcagggtaaccgctttcggaaaacatctgttcataaa
ttagaaaaatgaagatcctgtccatcccgttggagcataattacctttcg
ggcaccagaccggagtattttagtatcatcatgagaatcaggggggttac
ctcagactgatatattttctttagttctcctaaggtacttgggaagttca
ggggaaagccctacgtatggcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_88342864_88342907
seq2: B6Ng01-119J05.b_844_885 (reverse)

seq1  GAAGGAGAAGAAGGAGAAGAGGAGGAGGAGGAGGAGGAGGAGAA  44
      |||||||  | ||  || ||||||||||||||||||||||||||
seq2  GAAGGAG--GTAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAA  42

seq1: chr11_109630747_109631874
seq2: B6Ng01-119J05.g_69_1192

seq1  GAATTCCATCCCCAGCTCCCAGGATGGAGCGCACTTGTAATCCCAGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCCCAGCTCCCAGGATGGAGCGCACTTGTAATCCCAGTTCC  50

seq1  TGGGGAGGCAAAGACAGGAGGAAGCTTGTGGCTTTCTGGGAAGCAAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGCAAAGACAGGAGGAAGCTTGTGGCTTTCTGGGAAGCAAGTCT  100

seq1  AGTCTAATTGGTGAGCATCAGGTCCCAGTGAGAAACTGTTTCAAAAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAATTGGTGAGCATCAGGTCCCAGTGAGAAACTGTTTCAAAAAACA  150

seq1  AGGTGGGCCGGGTGTGGTGGCACACGCCTTTAATCCCAGCACTTGAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGCCGGGTGTGGTGGCACACGCCTTTAATCCCAGCACTTGAGAGG  200

seq1  CAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGA  250

seq1  GTTCCAGGACAGTCGGGGCCACACAGAGAAACCCTGTCTCAAAAGAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGACAGTCGGGGCCACACAGAGAAACCCTGTCTCAAAAGAACAA  300

seq1  ACAAACAAACAAACAAAACACAAAAAACCAAACACCCCCCCCCCCCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAAACACAAAAAACCAAACACCCCCCCCCCCCAAAA  350

seq1  ACCAACCAAACAAACAAACAAACAAAAAACAAACAAAAAACAAGGTGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCAAACAAACAAACAAACAAAAAACAAACAAAAAACAAGGTGGAC  400

seq1  AAGTTCTTAGGAACAATTTACTGTTTGACTTTTGGTTTTCTCATGTAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTTAGGAACAATTTACTGTTTGACTTTTGGTTTTCTCATGTAGGT  450

seq1  GCACACACACACACACACACACACACACACACACACACACACACACGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACACACACACACACACACACACACACACACACACACACACGTTT  500

seq1  CCAGTATGCAAACGTTTAGGGATGCATTCAAACTGTAAGAACAAATTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATGCAAACGTTTAGGGATGCATTCAAACTGTAAGAACAAATTATG  550

seq1  CTGTCCCTAGGATTCTGGGGGCTCAACAGAATCAAGGGGCAATCAAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCTAGGATTCTGGGGGCTCAACAGAATCAAGGGGCAATCAAATAG  600

seq1  TGGAAGAGAAAAGTCACCAGCACCTTTATAGAGAAGACAGCATTCGAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGAAAAGTCACCAGCACCTTTATAGAGAAGACAGCATTCGAGAT  650

seq1  GAAACTAGATCCTGAGATCAAAAAGCCCTGTGCCCAGGAAACTCCTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAGATCCTGAGATCAAAAAGCCCTGTGCCCAGGAAACTCCTGACA  700

seq1  AAGTGAGGTGTCCCTCAGGCCCAACCGCCTTCACAGAGCTGGCCACGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGGTGTCCCTCAGGCCCAACCGCCTTCACAGAGCTGGCCACGTCA  750

seq1  GCCTGATTCCTGGACCGTCAGGACTCCCGGGAAAGCTGCTTGGACCTTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATTCCTGGACCGTCAGGACTCCCGGGAAAGCTGCTTGGACCTTCG  800

seq1  GATGCGGAGAAATGACAAGGCTTTTCTATTTAAATACGGGTTTGTTGT-G  849
      ||||||||||||||||||||||||||||||||| |||||||||||||| |
seq2  GATGCGGAGAAATGACAAGGCTTTTCTATTTAATTACGGGTTTGTTGTGG  850

seq1  GCAGACCCGCACAGCTGTTGTCGAAATCAAAGATCAGTTTTTTGAGATTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  GCAGACCCGCACAGCTGTTGTCGAAATCAAAGATCAGTTTTTTGAGAT--  898

seq1  TTTTTACAACCTGTGTCAGGGTAACCGCTTCCGGAAAACATCTGTTCTAT  949
       |||||| |||||||||||||||||||||| ||||||||||||||||   
seq2  ATTTTACCACCTGTGTCAGGGTAACCGCTTTCGGAAAACATCTGTTCATA  948

seq1  AATTAG-AAAATGAAGATCTTGTCAAT-CCGTTGGAGCATAATTA-CTTT  996
      |||||| |||||||||||| |||| || ||||||||||||||||| ||||
seq2  AATTAGAAAAATGAAGATCCTGTCCATCCCGTTGGAGCATAATTACCTTT  998

seq1  CGGGCACCAGA-CGGAGGATTTTAGTATCATCATGAGAATTCAGGGGGGT  1045
      ||||||||||| ||||| ||||||||||||||||||||| ||||||||||
seq2  CGGGCACCAGACCGGAGTATTTTAGTATCATCATGAGAA-TCAGGGGGGT  1047

seq1  TA-CTCAGACGAGTATATTTTTCTTTTAGTTTCTTCTAAGGTAACTGGGA  1094
      || |||||||   ||||||||   ||||| |||| ||||||||  |||||
seq2  TACCTCAGACTGATATATTTT--CTTTAG-TTCTCCTAAGGTACTTGGGA  1094

seq1  GAGTTCAGGGGGAAAGCCCCTACGTATTTGCATT  1128
       |||||| |||||||| ||||||||| | |||||
seq2  -AGTTCA-GGGGAAAG-CCCTACGTA-TGGCATT  1124