BAC Information

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BAC

Clone NameB6Ng01-119N02
Chromosome11 (Build37)
Map Location 28,289,548 - 28,420,957
singlet/doubletdoublet
Overlap geneCcdc85a
Upstream geneLOC100042377, EG626571
Downstream geneEfemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119N02.bB6Ng01-119N02.g
ACCDH923930DH923931
length1,1441,202
definitionDH923930|Mus musculus domesticus DNA, BAC clone: B6Ng01-119N02, 5' end.DH923931|Mus musculus domesticus DNA, BAC clone: B6Ng01-119N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,419,778 - 28,420,957)(28,289,548 - 28,290,793)
sequence
gaattcacttacaaatataagcagtggaaatatttctgatctctgttctg
taactggcacaaaaactgcagtttttaaaccaagcccaagtccatgaaaa
atatttatagaagtcaaaattgagagtgaattacatcattgagaaagttc
agcattgctgtgtcaaggagatgataaagacctgataacgggaaaaaaaa
aggagtaaggataagccccttccccctttatccatcaacatttataggat
agcctgttgatcttgggaagaaagcagataggaaggaggcaagaatgtta
actacaatttgttagtcagtgtgtcttctaggagagtccctcctcctaag
gagacacttttagttcatttggtatcatgaagcagagatgatgagggtga
gtaccaacagtacaaagtttgtttgttcagtagccaatgaatagagaggc
agtaagactaaaacaaaacacaagaagaggggccaggagatcactaggtc
acaagtgcttattatgtacacatgggtagggatttgagtttgatgctcat
cacttatgaaaaaacctgaccacagtgaagtactcttacagtcccagttt
tagtgaggtacaaagccagatttcctggggtttgttggccagagggccta
gccttattggagggctccaagtctcactgagacactctccttgagaaata
aggtaaatagttcctgttgtatgacaccttcacattcacacatgctaatg
tgcatatttgtatatacatataaatatacatacaaaataccaaaaaataa
gcctaaccaaagagataaaagatccctaaaatgaaaacttgaagatacta
agaaaacaaagtgaagaagacactaggaaattggaagaccttttatacat
atgggatcggcagaattaagaagaaaatggctatattactgaaagtaacc
taaacattaatacatctattgtattcatacatggccacaagtttctatat
atctcagtggaaattaaaaaaaactatcctaaatcatatgcaatacaatg
atatggatagcatctaaacacatataagaagtgaggaaaaaaaagaatag
aaagtctatcacagtaataaccaattccactacccagagaaatc
gaattctttcatttctagaagagaaaaaacataaacataggcctaaggaa
attcagaaattattgaaataagatcgagaataacatgagtgtaaaactat
ggaagtcacccaaaatgctaatattcaagcactaactagaataaatacat
gcatgtctatacgcagtagaaccacctaactgccctagactattcactat
gaggacattgttagactgatgaatttcacaaaacagtgttctaacatgaa
cacaaaaacagtttgttcattagtaattgagagactatttctttttattt
tgcgtttagtgagaagtaaattctccagggacgtggactaccatttacaa
tgattcaaagacagccctgcttttcttcatttccaagacaatgaaactaa
gacatcaccactacatgggcaatatcctattacactcaaatggaatttta
gttatgtcctttaaataccaggaatggaattttatagcaatggatagctt
cagctctatacaagaagtcaagaaagtctcaaatgataccatgtgtttcc
catttcttgcccacagatataaccagttctaccaagaatgctattaatgt
ctggttttgaagcaaaggatatatctgaagaccatagaataactgcggct
atttaaaaaaacctggttattgtaattaaacagtggaactcgtgatcagc
tactgaattgtggaacacaaggggccattcccaatattacagtgagggaa
aaggaaactcctgctgaagtcagaactctgaacaaaagcaatgacactag
ggataatatataaataaaaagcagaaatctatgcacaagagtgtgattga
gatcatcaagtattccaactgtcacttggagatttcagaaaacccttaaa
tgacaagggaactaaaatggtgtttatgattctcagagggcgatatattc
atccttagagagaccaacaaaccattcattagcaatgtgacagtctatgg
atacagtctttttggtaagttgatgtactgcttatatctggagatatcag
aaactgacaaatgtcatactgagttctgcagagcttatgagcttatcatg
ccaaatactctgtaacattataaaaggttaggaatcaatagaaattttat
cttgttacctcaggaattttaattgccttatcgctttcttaacttcaccc
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_28419778_28420957
seq2: B6Ng01-119N02.b_50_1193 (reverse)

seq1  GATTTTCCTCTGGTGTAGTGGATTTGTTTTTACATTACTGGTGAATAGAC  50
      |||||  |||||| |||||||| ||| ||    |||||| ||| ||||| 
seq2  GATTT--CTCTGG-GTAGTGGAATTGGTT----ATTACT-GTG-ATAGA-  40

seq1  CTTTCTATTTCTTTTTTTTTTCCTTCACTTTCTTTATTAATGGTGTTTAG  100
      ||||||| |||||||||||   | ||||||  | |||     ||||||||
seq2  CTTTCTA-TTCTTTTTTTT---CCTCACTTCTTATAT-----GTGTTTAG  81

seq1  ATTGGCTATTCATAATCATTTGTATTTGCATATGAATTTTAGGATAGTTT  150
      ||  ||||| ||| |||| ||||| ||||||||||  ||||||||||  |
seq2  AT--GCTATCCAT-ATCA-TTGTA-TTGCATATGA--TTTAGGATAG--T  122

seq1  TTTTTTTAATTTCCACTGAGAATATAATTAGAAACTTGGTGGCCATTGTA  200
      |||||||||||||||||||| |||||  ||||||||| ||||||| ||||
seq2  TTTTTTTAATTTCCACTGAG-ATATA--TAGAAACTT-GTGGCCA-TGTA  167

seq1  TTGAATACAATAAGATTGTATTGAATGTTTAGGTTACTTTCAGTAATATA  250
       |||||||||| ||| |||||| |||||||||||||||||||||||||||
seq2  -TGAATACAAT-AGA-TGTATT-AATGTTTAGGTTACTTTCAGTAATATA  213

seq1  GCCATTTTCTTCTTAATTCTGCCGAT-CCATATGTATAAAAGGTCTTCCA  299
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCCATTTTCTTCTTAATTCTGCCGATCCCATATGTATAAAAGGTCTTCCA  263

seq1  ATTTCCTAGTGTCTTCTTCACTTTGTTTTCTTAGTATCTTCAAGTTTTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTAGTGTCTTCTTCACTTTGTTTTCTTAGTATCTTCAAGTTTTCA  313

seq1  TTTTAGGGATCTTTTATCTCTTTGGTTAGGCTTATTTTTTGGTATTTTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGGATCTTTTATCTCTTTGGTTAGGCTTATTTTTTGGTATTTTGT  363

seq1  ATGTATATTTATATGTATATACAAATATGCACATTAGCATGTGTGAATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATTTATATGTATATACAAATATGCACATTAGCATGTGTGAATGT  413

seq1  GAAGGTGTCATACAACAGGAACTATTTACCTTATTTCTCAAGGAGAGTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGTCATACAACAGGAACTATTTACCTTATTTCTCAAGGAGAGTGT  463

seq1  CTCAGTGAGACTTGGAGCCCTCCAATAAGGCTAGGCCCTCTGGCCAACAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGAGACTTGGAGCCCTCCAATAAGGCTAGGCCCTCTGGCCAACAA  513

seq1  ACCCCAGGAAATCTGGCTTTGTACCTCACTAAAACTGGGACTGTAAGAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGGAAATCTGGCTTTGTACCTCACTAAAACTGGGACTGTAAGAGT  563

seq1  ACTTCACTGTGGTCAGGTTTTTTCATAAGTGATGAGCATCAAACTCAAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACTGTGGTCAGGTTTTTTCATAAGTGATGAGCATCAAACTCAAAT  613

seq1  CCCTACCCATGTGTACATAATAAGCACTTGTGACCTAGTGATCTCCTGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACCCATGTGTACATAATAAGCACTTGTGACCTAGTGATCTCCTGGC  663

seq1  CCCTCTTCTTGTGTTTTGTTTTAGTCTTACTGCCTCTCTATTCATTGGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTTGTGTTTTGTTTTAGTCTTACTGCCTCTCTATTCATTGGCT  713

seq1  ACTGAACAAACAAACTTTGTACTGTTGGTACTCACCCTCATCATCTCTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACAAACAAACTTTGTACTGTTGGTACTCACCCTCATCATCTCTGC  763

seq1  TTCATGATACCAAATGAACTAAAAGTGTCTCCTTAGGAGGAGGGACTCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGATACCAAATGAACTAAAAGTGTCTCCTTAGGAGGAGGGACTCTC  813

seq1  CTAGAAGACACACTGACTAACAAATTGTAGTTAACATTCTTGCCTCCTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGACACACTGACTAACAAATTGTAGTTAACATTCTTGCCTCCTTC  863

seq1  CTATCTGCTTTCTTCCCAAGATCAACAGGCTATCCTATAAATGTTGATGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGCTTTCTTCCCAAGATCAACAGGCTATCCTATAAATGTTGATGG  913

seq1  ATAAAGGGGGAAGGGGCTTATCCTTACTCCTTTTTTTTTCCCGTTATCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGGGGAAGGGGCTTATCCTTACTCCTTTTTTTTTCCCGTTATCAG  963

seq1  GTCTTTATCATCTCCTTGACACAGCAATGCTGAACTTTCTCAATGATGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATCATCTCCTTGACACAGCAATGCTGAACTTTCTCAATGATGTA  1013

seq1  ATTCACTCTCAATTTTGACTTCTATAAATATTTTTCATGGACTTGGGCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTCTCAATTTTGACTTCTATAAATATTTTTCATGGACTTGGGCTT  1063

seq1  GGTTTAAAAACTGCAGTTTTTGTGCCAGTTACAGAACAGAGATCAGAAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAAAACTGCAGTTTTTGTGCCAGTTACAGAACAGAGATCAGAAAT  1113

seq1  ATTTCCACTGCTTATATTTGTAAGTGAATTC  1180
      |||||||||||||||||||||||||||||||
seq2  ATTTCCACTGCTTATATTTGTAAGTGAATTC  1144

seq1: chr11_28289548_28290793
seq2: B6Ng01-119N02.g_67_1268

seq1  GAATTCTTTCATTTCTAGAAGAGAAAAAACATAAACATAGGCCTAAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATTTCTAGAAGAGAAAAAACATAAACATAGGCCTAAGGAA  50

seq1  ATTCAGAAATTATTGAAATAAGATCGAGAATAACATGAGTGTAAAACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAAATTATTGAAATAAGATCGAGAATAACATGAGTGTAAAACTAT  100

seq1  GGAAGTCACCCAAAATGCTAATATTCAAGCACTAACTAGAATAAATACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCACCCAAAATGCTAATATTCAAGCACTAACTAGAATAAATACAT  150

seq1  GCATGTCTATACGCAGTAGAACCACCTAACTGCCCTAGACTATTCACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCTATACGCAGTAGAACCACCTAACTGCCCTAGACTATTCACTAT  200

seq1  GAGGACATTGTTAGACTGATGAATTTCACAAAACAGTGTTCTAACATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACATTGTTAGACTGATGAATTTCACAAAACAGTGTTCTAACATGAA  250

seq1  CACAAAAACAGTTTGTTCATTAGTAATTGAGAGACTATTTCTTTTTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAACAGTTTGTTCATTAGTAATTGAGAGACTATTTCTTTTTATTT  300

seq1  TGCGTTTAGTGAGAAGTAAATTCTCCAGGGACGTGGACTACCATTTACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTTAGTGAGAAGTAAATTCTCCAGGGACGTGGACTACCATTTACAA  350

seq1  TGATTCAAAGACAGCCCTGCTTTTCTTCATTTCCAAGACAATGAAACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAAAGACAGCCCTGCTTTTCTTCATTTCCAAGACAATGAAACTAA  400

seq1  GACATCACCACTACATGGGCAATATCCTATTACACTCAAATGGAATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCACCACTACATGGGCAATATCCTATTACACTCAAATGGAATTTTA  450

seq1  GTTATGTCCTTTAAATACCAGGAATGGAATTTTATAGCAATGGATAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTCCTTTAAATACCAGGAATGGAATTTTATAGCAATGGATAGCTT  500

seq1  CAGCTCTATACAAGAAGTCAAGAAAGTCTCAAATGATACCATGTGTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTATACAAGAAGTCAAGAAAGTCTCAAATGATACCATGTGTTTCC  550

seq1  CATTTCTTGCCCACAGATATAACCAGTTCTACCAAGAATGCTATTAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTGCCCACAGATATAACCAGTTCTACCAAGAATGCTATTAATGT  600

seq1  CTGGTTTTGAAGCAAAGGATATATCTGAAGACCATAGAATAACTGCGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTGAAGCAAAGGATATATCTGAAGACCATAGAATAACTGCGGCT  650

seq1  ATTTAAAAAAACCTGGTTATTGTAATTAAACAGTGGAACTCGTGATCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAAACCTGGTTATTGTAATTAAACAGTGGAACTCGTGATCAGC  700

seq1  TACTGAATTGTGGAACACAAGGGGCCATTCCCAATATTACAGTGAGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAATTGTGGAACACAAGGGGCCATTCCCAATATTACAGTGAGGGAA  750

seq1  AAGGAAACTCCTGCTGAAGTCAGAACTCTGAACAAAAGCAATGACACTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACTCCTGCTGAAGTCAGAACTCTGAACAAAAGCAATGACACTAG  800

seq1  GGATAATATATAAATAAAAAGCAGAAATCTATGCACAAGAGTGTGATTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATATATAAATAAAAAGCAGAAATCTATGCACAAGAGTGTGATTGA  850

seq1  GATCATCAAGTATTCCAACTGTCACTTGGAGATTTCAGAAAAACCTTAAA  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GATCATCAAGTATTCCAACTGTCACTTGGAGATTTCAGAAAACCCTTAAA  900

seq1  TGACAAGGGAACTAAAAATGGTGTTTATGATTCTCAGAGGGCGATATATT  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGGAACT-AAAATGGTGTTTATGATTCTCAGAGGGCGATATATT  949

seq1  CATCCTTAGAAGAGAACCAACAAACCATTCATTAAGCAATGTGACAGTCT  1000
      ||||||||| |||| |||||||||||||||||| ||||||||||||||||
seq2  CATCCTTAG-AGAG-ACCAACAAACCATTCATT-AGCAATGTGACAGTCT  996

seq1  ATGGATAACAGTCTTTTTGGTAAGTTGATGTTACCTGCTTATATCCTGGA  1050
      |||||| ||||||||||||||||||||||||   |||||||||| |||||
seq2  ATGGAT-ACAGTCTTTTTGGTAAGTTGATGT--ACTGCTTATAT-CTGGA  1042

seq1  GGAATATCAGAAACTGACAAAATGTTCATTACCTTGAGTTCTTGCAGAGC  1100
      |  ||||||||||||||| ||||| ||| |||  ||||||| ||||||| 
seq2  G--ATATCAGAAACTGAC-AAATG-TCA-TAC--TGAGTTC-TGCAGAG-  1083

seq1  CTTATGAAGCTTATCATGCCACATATAACTCTGTAACATTATAAAAGTTT  1150
      |||||| |||||||||||||| ||   |||||||||||||||||||| | 
seq2  CTTATG-AGCTTATCATGCCAAAT---ACTCTGTAACATTATAAAAGGT-  1128

seq1  ATAGATATCCAAATAAGGAATATTTTTAATCTTTGTTACCTTCCAGGAAA  1200
       |||  |||  ||||  ||| |||||  ||| |||||||||  |||||| 
seq2  -TAGGAATC--AATA--GAA-ATTTT--ATC-TTGTTACCT--CAGGAA-  1166

seq1  ATTATTTATAATTGCCTTATAATCTGCTTTCTTACTCTCCACCCTG  1246
           || ||||||||||||     |||||||||  || |||||||
seq2  -----TTTTAATTGCCTTAT----CGCTTTCTTA-ACTTCACCCTG  1202