BAC Information

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BAC

Clone NameB6Ng01-122E02
Chromosome11 (Build37)
Map Location 83,481,635 - 83,635,220
singlet/doubletdoublet
Overlap geneOTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191
Upstream geneCct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4
Downstream geneTcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf, Lhx1, Mrm1, BC022224
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122E02.bB6Ng01-122E02.g
ACCDH925727DH925728
length9021,158
definitionDH925727|Mus musculus domesticus DNA, BAC clone: B6Ng01-122E02, 5' end.DH925728|Mus musculus domesticus DNA, BAC clone: B6Ng01-122E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,634,564 - 83,635,220)(83,481,635 - 83,482,803)
sequence
gaattcctggagttattttgagttatttaccttcctgtttaaggagcttc
cctgaaggataggttgtttcaatctcaaaggaaactgttacacaacatgg
gctaatctaggctgcaaaatcctatctcaaaaacaaaaaaacaaaaaaca
aaaaacaaaacaaaacaaaaccgggtggtgtgtgtgtgtgtgtgtttatt
tgaagtaggggctcactatctagctttggttggccttgaactctccatgt
agttcagcctggccttgaactctcagagatccagttgcctgtttcctgag
tgctgggataaaagttgtgccccaccacatctatcctctaaacacatttc
tgactgacagcagatttcttatcagctactaaagatgccagaacccagtg
ggagtaaacttgaaaatgcacaagaagaacagccactcacatacagattc
atagctaaggtgtagtcaagactgaaaacaatataaagacttttctcaga
tagagaagagcttatctgtcataatccctcagtgagagaattactaaagg
atgtgctttgaagacagctgatcctatatgaagtggcacttaagaaccaa
cacaaacaaaaaataaatacataattgtatagtcatatttaaataatatt
gactataaattatttcatacaataattttgttggattacaaaaataagat
gacaccgaagaactataacatggtacaaactttgggaaggactgaagttt
ctacatctgggggaaagaagttggagatattaacactacactaatatttc
aaagaagttggagatattaataattatactaatatttcaaagaagtttgg
agatattacactacactaatatttcaagggttctttaccttaagtagtga
gg
gaattcttaggtgaagaagaatcaatccatcatctcatgtatcagatggg
gcctagagtagacagggcctgtttgtgtctgcattgttgctgagagagca
aggttagggctggaatcaggatctcctccttcataattaattcctgtccc
attaccaccctgccctgggcaaactggagtagttagttccacagaggtgg
gactgcttcacccaggaacaacaaaggacttcatggagccttacctgtga
gaatccagctgttggatctcccttcagggatctcccttctcttggcatgt
gacctcttttagtctactatgagaaaacttacctacttgcttagctttcc
ccatggatgtcctccaggtttctggttttgcaggaggcagatcaagggaa
gtttcctatgactttcagagtaacatctgagtgccagccagtactgatct
cctcccttcagaaccttcctcccacattctcttctcaataagcataggga
tgcatgtatccctatagtatggtatggtatagaatcctctgagtatatat
gcccagggtcatatatatcaaaatatctggatcattcagtagttcctttt
tttttttttaagaaatctcaatctgatttctgctaatctgtattaattta
caatcccatcaacagtgaataaaggttcctttgtctccacatcctttctt
gcctgtgtgtgcctgcatgtgcatttacacacccacccatacacacacac
acactcacacacacaaatacatatatcctgcaacccttattgtattttgg
gggtccaggagttttctagtagactcagtaaaattgcaaataggacaggt
tgacttctttttctcctactattatccttttaaagtattttttcttgtct
aattttttgtagctcagacttaagagaaatattgagtaagagctaagaga
gctgatatccttgtcatgtcctgattagaggaaagctctcagcctgtctc
ctcctaatataaagttgtctatagctgtataaagccttctcttctggagg
tatgtttgatctaatcctaaggtctccggaacctttatcatgaaggcatg
tgacctcgtcaatgcctttgaatattaattccttgacttaccttatgttc
atagagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_83634564_83635220
seq2: B6Ng01-122E02.b_290_948 (reverse)

seq1  CCTCACTACCTTAGGTAAAGAACCCTTGAAATATTAGTGTAGTGTTAATA  50
      ||||||||| | |||||||||||||||||||||||||||||||| |||||
seq2  CCTCACTACTTAAGGTAAAGAACCCTTGAAATATTAGTGTAGTG-TAATA  49

seq1  TCTCC-AACTTCTTTGAAATATTAGTATAA-TATTAATATCTCCAACTTC  98
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTCCAAACTTCTTTGAAATATTAGTATAATTATTAATATCTCCAACTTC  99

seq1  TTTGAAATATTAGTGTAGTGTTAATATCTCCAACTTCTTTCCCCCAGATG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATATTAGTGTAGTGTTAATATCTCCAACTTCTTTCCCCCAGATG  149

seq1  TAGAAACTTCAGTCCTTCCC-AAGTTTGTACCATGTTATAGTTCTTCGGT  197
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAGAAACTTCAGTCCTTCCCAAAGTTTGTACCATGTTATAGTTCTTCGGT  199

seq1  GTCATCTTATTTTTGTAATCCAACAAAATTATTGTATGAAATAATTTATA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTTATTTTTGTAATCCAACAAAATTATTGTATGAAATAATTTATA  249

seq1  GTCAATATTATTTAAATATGACTATACAATTATGTATTTATTTTTTGTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATATTATTTAAATATGACTATACAATTATGTATTTATTTTTTGTTT  299

seq1  GTGTTGGTTCTTAAGTGCCACTTCATATAGGATCAGCTGTCTTCAAAGCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGTTCTTAAGTGCCACTTCATATAGGATCAGCTGTCTTCAAAGCA  349

seq1  CATCCTTTAGTAATTCTCTCACTGAGGGATTATGACAGATAAGCTCTTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTAGTAATTCTCTCACTGAGGGATTATGACAGATAAGCTCTTCT  399

seq1  CTATCTGAGAAAAGTCTTTATATTGTTTTCAGTCTTGACTACACCTTAGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGAGAAAAGTCTTTATATTGTTTTCAGTCTTGACTACACCTTAGC  449

seq1  TATGAATCTGTATGTGAGTGGCTGTTCTTCTTGTGCATTTTCAAGTTTAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATCTGTATGTGAGTGGCTGTTCTTCTTGTGCATTTTCAAGTTTAC  499

seq1  TCCCACTGGGTTCTGGCATCTTTAGTAGCTGATAAGAAATCTGCTGTCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTGGGTTCTGGCATCTTTAGTAGCTGATAAGAAATCTGCTGTCAG  549

seq1  TCAGAAATGTGTTTAGAGGATAGATGTGGTGGGGCACAACTTTTATCCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATGTGTTTAGAGGATAGATGTGGTGGGGCACAACTTTTATCCCA  599

seq1  GCACTCAGGAAACAGGCAACTGGATCTCTGAGAGTTCAAGGCCAGGCTGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCAGGAAACAGGCAACTGGATCTCTGAGAGTTCAAGGCCAGGCTGA  649

seq1  ACTACATGGA  657
      ||||||||||
seq2  ACTACATGGA  659

seq1: chr11_83481635_83482803
seq2: B6Ng01-122E02.g_66_1223

seq1  GAATTCTTAGGTGAAGAAGAATCAATCCATCATCTCATGTATCAGATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGTGAAGAAGAATCAATCCATCATCTCATGTATCAGATGGG  50

seq1  GCCTAGAGTAGACAGGGCCTGTTTGTGTCTGCATTGTTGCTGAGAGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAGTAGACAGGGCCTGTTTGTGTCTGCATTGTTGCTGAGAGAGCA  100

seq1  AGGTTAGGGCTGGAATCAGGATCTCCTCCTTCATAATTAATTCCTGTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGGGCTGGAATCAGGATCTCCTCCTTCATAATTAATTCCTGTCCC  150

seq1  ATTACCACCCTGCCCTGGGCAAACTGGAGTAGTTAGTTCCACAGAGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCACCCTGCCCTGGGCAAACTGGAGTAGTTAGTTCCACAGAGGTGG  200

seq1  GACTGCTTCACCCAGGAACAACAAAGGACTTCATGGAGCCTTACCTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTTCACCCAGGAACAACAAAGGACTTCATGGAGCCTTACCTGTGA  250

seq1  GAATCCAGCTGTTGGATCTCCCTTCAGGGATCTCCCTTCTCTTGGCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAGCTGTTGGATCTCCCTTCAGGGATCTCCCTTCTCTTGGCATGT  300

seq1  GACCTCTTTTAGTCTACTATGAGAAAACTTACCTACTTGCTTAGCTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTTTTAGTCTACTATGAGAAAACTTACCTACTTGCTTAGCTTTCC  350

seq1  CCATGGATGTCCTCCAGGTTTCTGGTTTTGCAGGAGGCAGATCAAGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGATGTCCTCCAGGTTTCTGGTTTTGCAGGAGGCAGATCAAGGGAA  400

seq1  GTTTCCTATGACTTTCAGAGTAACATCTGAGTGCCAGCCAGTACTGATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTATGACTTTCAGAGTAACATCTGAGTGCCAGCCAGTACTGATCT  450

seq1  CCTCCCTTCAGAACCTTCCTCCCACATTCTCTTCTCAATAAGCATAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTCAGAACCTTCCTCCCACATTCTCTTCTCAATAAGCATAGGGA  500

seq1  TGCATGTATCCCTATAGTATGGTATGGTATAGAATCCTCTGAGTATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTATCCCTATAGTATGGTATGGTATAGAATCCTCTGAGTATATAT  550

seq1  GCCCAGGGTCATATATATCAAAATATCTGGATCATTCAGTAGTTCCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGGTCATATATATCAAAATATCTGGATCATTCAGTAGTTCCTTTT  600

seq1  TTTTTTTTTAAGAAATCTCAATCTGATTTCTGCTAATCTGTATTAATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAAGAAATCTCAATCTGATTTCTGCTAATCTGTATTAATTTA  650

seq1  CAATCCCATCAACAGTGAATAAAGGTTCCTTTGTCTCCACATCCTTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCATCAACAGTGAATAAAGGTTCCTTTGTCTCCACATCCTTTCTT  700

seq1  GCCTGTGTGTGCCTGCATGTGCATTTACACACCCACCCATACACACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTGTGCCTGCATGTGCATTTACACACCCACCCATACACACACAC  750

seq1  ACACTCACACACACAAATACATATATCCTGCAA-CCTTATTGTATTTTGG  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACACTCACACACACAAATACATATATCCTGCAACCCTTATTGTATTTTGG  800

seq1  GGGTCCAGGAGTTTTCTAGTAGACTCAGTAAAATTGCAAATAGGACAGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCAGGAGTTTTCTAGTAGACTCAGTAAAATTGCAAATAGGACAGGT  850

seq1  TGACTTCTTTTTCTCCTACTATTATCCTTTTAAAGTA-TTTTTCTTGTCT  898
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGACTTCTTTTTCTCCTACTATTATCCTTTTAAAGTATTTTTTCTTGTCT  900

seq1  AA-TTTTTGTAGCTCAGACTTAAGAGATATATTGAGTAAGAGCTAAGAGA  947
      || |||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATTTTTTGTAGCTCAGACTTAAGAGAAATATTGAGTAAGAGCTAAGAGA  950

seq1  GCTGATATCCTTGTCATGTTCCTGATTTTAGAGGAAAAGCTCTCAGCCTG  997
      |||||||||||||||||| ||||||  ||||||| |||||||||||||||
seq2  GCTGATATCCTTGTCATG-TCCTGA--TTAGAGG-AAAGCTCTCAGCCTG  996

seq1  TCTCTTCCTAATATAAAGTTGTCTATAAGCTTGTATAAAGCCTTCTTCTT  1047
      |||| ||||||||||||||||||||| ||| |||||||||||||| ||||
seq2  TCTCCTCCTAATATAAAGTTGTCTAT-AGC-TGTATAAAGCCTTC-TCTT  1043

seq1  CT-GAGGTATGTTTGATCTATTCCTAAAGTCTCGGGACCTTTTATCATGA  1096
      || ||||||||||||||||| |||||| ||||| ||| | ||||||||||
seq2  CTGGAGGTATGTTTGATCTAATCCTAAGGTCTCCGGAACCTTTATCATGA  1093

seq1  AGGCATGTTGAACTCTGTCAAATGCCTTTGAAATAATTATGTCCTTGACT  1146
      ||||||| ||| ||| ||| ||||||||||||   ||||  |||||||||
seq2  AGGCATG-TGACCTC-GTC-AATGCCTTTGAA--TATTAATTCCTTGACT  1138

seq1  TTACTTATATGTTCATCAGAGAT  1169
      |  ||  ||||||||| ||||||
seq2  TACCT--TATGTTCAT-AGAGAT  1158