BAC Information

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BAC

Clone NameB6Ng01-122O06
Chromosome11 (Build37)
Map Location 59,934,972 - 60,068,260
singlet/doubletdoublet
Overlap geneRai1, Srebf1, Tom1l2
Upstream geneA230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt
Downstream geneLOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122O06.bB6Ng01-122O06.g
ACCDH926202DH926203
length8811,076
definitionDH926202|Mus musculus domesticus DNA, BAC clone: B6Ng01-122O06, 5' end.DH926203|Mus musculus domesticus DNA, BAC clone: B6Ng01-122O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,934,972 - 59,935,850)(60,067,177 - 60,068,260)
sequence
gaattcattatgtagcccaggttggtcttcaatcatggtcatcttcctgc
cttagtctcccaagtgctgagattacaggcacgaacaaacagctgcttca
tacttatcttgaagtctacccattgggtaggaaatgggggtaaattcttc
agcaattcacctgaactttccaattttaccatcctagatggctgatgctt
tcctcaccacctctcttattgttcctcttggctgtgatccataaatggta
gtagagtttcctggttatgagccctggctgaagttcaaatccttattatg
actttaaagaaagaaaattcacatggtggtggaggtggtggcacacacct
ttattcccagcatttgggaggcagaggcaggtgaatctctgagtttgaga
tcaacctagactacagagctagttctaaggcagctaggactacacgggga
aaattgtctcaaacaaaacaaaacaaacaaacaaaaagatggttcagtgg
gtagggtgctggctaccaagcctgaaaacctacctgaatttgatccctag
aacctacatgatggaaggaaagaactgacccatgcagctgtcctctagct
tgtacaagggtcactcttcccccatatgtaaacaaaacagatgctttttc
tccaccccctcaaccccaccccaccctaccctaccccactgaactccttt
ttgtttactcctagcgctttcttcttccctccttgtctgctacactacct
gagccagaatctccaagcataaacagtccacatagggaaatcctggccga
ggcctgcctctgtgggccaatgtttgggggatcagacagaaactagattc
tgggtactgtcctttttgaaacctgactctt
gaattctctgttcctttgccttgaaaagggtttagaggataaaaagatta
tgttgtgaggtagggatgaaactgtctcttgaagggaagataactgcatc
agggttaacgaggcagcaaagagggtatttgatccagtgttctgactgac
ggcaggcatttgcagaagtgactggctgctgagaaccagagataggagga
tgccagagcggaaggccttggcactgaaggaattcctggcccagagtctg
catggtggaaagaaagacctgcacaagttgctggcctctggcccaggaga
gaatcagtcactgctcctcatggttaagaatagagggggactgaggtatc
tccaacagccttctgtgatggcggtagatgacaccagggaggccatgagg
gtggtcggctggcacagagtggcacaaatcccaaggttatgctccatctc
tttttccttttctttttaaacatgatttttttaaacttttaatgatgtgc
ctgtgtgagggtatgtgcatgtaagtacagacgaagaccagaaggggaca
ccatatctcctggagttgggagttatgtggttttgagccaccctttgtgt
gctaagaactgaactcgggttccctgcaacagcagtgcacattttaacca
ctgagccatctctaaagatgtattattttacgttatgcatataaatgttt
tgtctgtatgtctgtttctcttgtgtgcctggtaccagcagaggtcagga
gagggtgtcatgtcccctggacctggagttacaggcaattgggagccata
agtaaatgcatgttgttctttagaattagaatgcaccactgaatcatgac
acatgaattttagattgctaatatatcctttgtaatgattcatttacata
tatgggatttcatctctttttaccctttttgagacactgtttaaagttga
agtcagaaatgtgcagagaccatgagtcagatgctgaatgtgtgagcctt
tccctggcagattgctgtgacagccctggaggaagtcttccccatggtgg
ccctgtgaaatctctggagagaggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_59934972_59935850
seq2: B6Ng01-122O06.b_50_929

seq1  GAATTCATTATGTAGCCCAGGTTGGTCTTCAATCATGGTCATCTTCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATGTAGCCCAGGTTGGTCTTCAATCATGGTCATCTTCCTGC  50

seq1  CTTAGTCTCCCAAGTGCTGAGATTACAGGCACGAACAAACAGCTGCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCTCCCAAGTGCTGAGATTACAGGCACGAACAAACAGCTGCTTCA  100

seq1  TACTTATCTTGAAGTCTACCCATTGGGTAGGAAATGGGGGTAAATTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATCTTGAAGTCTACCCATTGGGTAGGAAATGGGGGTAAATTCTTC  150

seq1  AGCAATTCACCTGAACTTTCCAATTTTACCATCCTAGATGGCTGATGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTCACCTGAACTTTCCAATTTTACCATCCTAGATGGCTGATGCTT  200

seq1  TCCTCACCACCTCTCTTATTGTTCCTCTTGGCTGTGATCCATAAATGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACCACCTCTCTTATTGTTCCTCTTGGCTGTGATCCATAAATGGTA  250

seq1  GTAGAGTTTCCTGGTTATGAGCCCTGGCTGAAGTTCAAATCCTTATTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGTTTCCTGGTTATGAGCCCTGGCTGAAGTTCAAATCCTTATTATG  300

seq1  ACTTTAAAGAAAGAAAATTCACATGGTGGTGGAGGTGGTGGCACACACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAGAAAGAAAATTCACATGGTGGTGGAGGTGGTGGCACACACCT  350

seq1  TTATTCCCAGCATTTGGGAGGCAGAGGCAGGTGAATCTCTGAGTTTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCCAGCATTTGGGAGGCAGAGGCAGGTGAATCTCTGAGTTTGAGA  400

seq1  TCAACCTAGACTACAGAGCTAGTTCTAAGGCAGCTAGGACTACACGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTAGACTACAGAGCTAGTTCTAAGGCAGCTAGGACTACACGGGGA  450

seq1  AAATTGTCTCAAACAAAACAAAACAAACAAACAAAAAGATGGTTCAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTCTCAAACAAAACAAAACAAACAAACAAAAAGATGGTTCAGTGG  500

seq1  GTAGGGTGCTGGCTACCAAGCCTGAAAACCTACCTGAATTTGATCCCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTGCTGGCTACCAAGCCTGAAAACCTACCTGAATTTGATCCCTAG  550

seq1  AACCTACATGATGGAAGGAAAGAACTGACCCATGCAGCTGTCCTCTAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACATGATGGAAGGAAAGAACTGACCCATGCAGCTGTCCTCTAGCT  600

seq1  TGTACAAGGGTCACTCTTCCCCCATATGTAAACAAAACAGATGCTTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAAGGGTCACTCTTCCCCCATATGTAAACAAAACAGATGCTTTTTC  650

seq1  TCCACCCCCTCAACCCCACCCCACCCTACCCTACCCCACTGAACTCCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCCCTCAACCCCACCCCACCCTACCCTACCCCACTGAACTCCTTT  700

seq1  TTGTTCACTCCTAGCGCATTTCTTCTTCCCTCCTTGTCTGCTACACTACC  750
      ||||| ||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTGTTTACTCCTAGCGC-TTTCTTCTTCCCTCCTTGTCTGCTACACTACC  749

seq1  TGAGCCAGAATCTCCAAGCATAAACAGTCCACATAGGGAAATCCTGGCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAGAATCTCCAAGCATAAACAGTCCACATAGGGAAATCCTGGCCG  799

seq1  AGGCCTGCCTCTGTGGGCCAATG-TTGGGGGAACAGACAGAAGCTAGATT  849
      ||||||||||||||||||||||| |||||||| ||||||||| |||||||
seq2  AGGCCTGCCTCTGTGGGCCAATGTTTGGGGGATCAGACAGAAACTAGATT  849

seq1  CT-GGTACTGTCCTTTTTGAAACCTGGCTCT  879
      || ||||||||||||||||||||||| ||||
seq2  CTGGGTACTGTCCTTTTTGAAACCTGACTCT  880

seq1: chr11_60067177_60068260
seq2: B6Ng01-122O06.g_68_1143 (reverse)

seq1  AACCTCTCTCCAGAG-TCTCACA-GGCCACACTGTGGAAGAC-TCCTCCA  47
      ||||||||||||||| | ||||| ||||||  || ||||||| |||||||
seq2  AACCTCTCTCCAGAGATTTCACAGGGCCACCATGGGGAAGACTTCCTCCA  50

seq1  GGGCTGTCACAAGCACTCTGCCCAGGGACAGGCTCACACATTCCAGCCTT  97
      |||||||||| |||| |||| ||||||| ||||||||||||| ||| | |
seq2  GGGCTGTCAC-AGCAATCTG-CCAGGGAAAGGCTCACACATT-CAG-CAT  96

seq1  CTGACTCATGGTCTCTGCACATTTCCTGACTTCAACTTTTAAACCAGTGT  147
      |||||||||||||||||||||||| ||||||||||||||  || ||||||
seq2  CTGACTCATGGTCTCTGCACATTT-CTGACTTCAACTTT--AAACAGTGT  143

seq1  CTCAAAAAAGGGTAAAAAAGAGATGAAATCCCATATATGTAAAATGAAAT  197
      ||| ||||||||| |||||||||||||||||||||||||| ||||| |||
seq2  CTC-AAAAAGGGT-AAAAAGAGATGAAATCCCATATATGT-AAATG-AAT  189

seq1  CATTACAAAGGATATATTAGCAATCTAAAATTCATGTGTCATGATTCAGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAAAGGATATATTAGCAATCTAAAATTCATGTGTCATGATTCAGT  239

seq1  GGTGCATTCTAATTCTAAAGAACAACATGCATTTACTTATGGCTCCCAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATTCTAATTCTAAAGAACAACATGCATTTACTTATGGCTCCCAAT  289

seq1  TGCCTGTAACTCCAGGTCCAGGGGACATGACACCCTCTCCTGACCTCTGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTAACTCCAGGTCCAGGGGACATGACACCCTCTCCTGACCTCTGC  339

seq1  TGGTACCAGGCACACAAGAGAAACAGACATACAGACAAAACATTTATATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCAGGCACACAAGAGAAACAGACATACAGACAAAACATTTATATG  389

seq1  CATAACGTAAAATAATACATCTTTAGAGATGGCTCAGTGGTTAAAATGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACGTAAAATAATACATCTTTAGAGATGGCTCAGTGGTTAAAATGTG  439

seq1  CACTGCTGTTGCAGGGAACCCGAGTTCAGTTCTTAGCACACAAAGGGTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTGTTGCAGGGAACCCGAGTTCAGTTCTTAGCACACAAAGGGTGG  489

seq1  CTCAAAACCACATAACTCCCAACTCCAGGAGATATGGTGTCCCCTTCTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAACCACATAACTCCCAACTCCAGGAGATATGGTGTCCCCTTCTGG  539

seq1  TCTTCGTCTGTACTTACATGCACATACCCTCACACAGGCACATCATTAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGTCTGTACTTACATGCACATACCCTCACACAGGCACATCATTAAA  589

seq1  AGTTTAAAAAAATCATGTTTAAAAAGAAAAGGAAAAAGAGATGGAGCATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAAAAAATCATGTTTAAAAAGAAAAGGAAAAAGAGATGGAGCATA  639

seq1  ACCTTGGGATTTGTGCCACTCTGTGCCAGCCGACCACCCTCATGGCCTCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGGATTTGTGCCACTCTGTGCCAGCCGACCACCCTCATGGCCTCC  689

seq1  CTGGTGTCATCTACCGCCATCACAGAAGGCTGTTGGAGATACCTCAGTCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTCATCTACCGCCATCACAGAAGGCTGTTGGAGATACCTCAGTCC  739

seq1  CCCTCTATTCTTAACCATGAGGAGCAGTGACTGATTCTCTCCTGGGCCAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTATTCTTAACCATGAGGAGCAGTGACTGATTCTCTCCTGGGCCAG  789

seq1  AGGCCAGCAACTTGTGCAGGTCTTTCTTTCCACCATGCAGACTCTGGGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCAACTTGTGCAGGTCTTTCTTTCCACCATGCAGACTCTGGGCC  839

seq1  AGGAATTCCTTCAGTGCCAAGGCCTTCCGCTCTGGCATCCTCCTATCTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTCCTTCAGTGCCAAGGCCTTCCGCTCTGGCATCCTCCTATCTCT  889

seq1  GGTTCTCAGCAGCCAGTCACTTCTGCAAATGCCTGCCGTCAGTCAGAACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCAGCAGCCAGTCACTTCTGCAAATGCCTGCCGTCAGTCAGAACA  939

seq1  CTGGATCAAATACCCTCTTTGCTGCCTCGTTAACCCTGATGCAGTTATCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCAAATACCCTCTTTGCTGCCTCGTTAACCCTGATGCAGTTATCT  989

seq1  TCCCTTCAAGAGACAGTTTCATCCCTACCTCACAACATAATCTTTTTATC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCAAGAGACAGTTTCATCCCTACCTCACAACATAATCTTTTTATC  1039

seq1  CTCTAAACCCTTTTCAAGGCAAAGGAACAGAGAATTC  1084
      |||||||||||||||||||||||||||||||||||||
seq2  CTCTAAACCCTTTTCAAGGCAAAGGAACAGAGAATTC  1076