BAC Information

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BAC

Clone NameB6Ng01-123E15
Chromosome11 (Build37)
Map Location 101,532,475 - 101,664,239
singlet/doubletdoublet
Overlap geneDhx8, Etv4
Upstream geneD11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842
Downstream geneMeox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123E15.bB6Ng01-123E15.g
ACCDH926495DH926496
length913774
definitionDH926495|Mus musculus domesticus DNA, BAC clone: B6Ng01-123E15, 5' end.DH926496|Mus musculus domesticus DNA, BAC clone: B6Ng01-123E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,532,475 - 101,533,390)(101,663,474 - 101,664,239)
sequence
gaattccatgtcaaactcaccctaggaccaggtactcatgtatcgcacac
atacacacataagaaaaaaaaagttttactgaccatcgtccatgacagag
gtgatagatctaatctaaacataggaaatgctggctgtggtggtgcatgc
atgccgtcaattttaggactggagaggcaggtggatttctgagttcgagg
ccctcctggtctatagagtgagttccaagacagccagagctacacagaga
aacactatctcaaaaaacaaaacaagataagaaaaaaaaaagaggaagat
gaatgtagaaaaacaccctaatttaaacttacgtgctaaacattctgaac
aagttttaaatctattcttctgcttgtctttctttgcatatggataaaaa
gatgtgtctctctgaccatacaagggcttacataaggtgtcctgtttagc
tttgccgttttcatttatatcttggacatgattcattgctgacacctttg
agttttcttactctttttgatgacgacatgaaatttcattatgtgactgc
atcatcattttattaatgaatttattattgaactcaccatgggaatgaac
taagaacctccttgcatggtttttgttttttggttttttgtttgtttgtt
ggttggttggtttgttttgtacacttgaggaaaattccttgtgccaaagg
gatttacatggacaagttcaaggtggcttagaaggtagagtcacctgctg
ctgaccctgacaacctgggtgtgacccccacatgagggagaaaggggact
ggcccctgaaatgtatcccttgactccctgaaacgtgtctcagactccat
aattataccaaggctcactcgcagacgcacgaatgcacatacaaaaaggg
tcttatagacagg
gaattctgccccaacactgcaccccatgctacacagtgaattgtgggtat
cctcagaagaccctgaaacaaatcccaggcacagctgtaaacatctgtgt
gctcactcgaattaaaacaacaacaacaacaaccaaaacagagcagttct
aacaccaacaaaggttatttgtgtctcttctcagcccataaactattctc
tttcccacaagagacttattattcccgatcctgtcaccacccattggtta
aatctgtccctttgctgtagtttttcgggggggggggatagtgaaacagc
atttcatgtagcccaggctagtctcctactcactatgtagacaaagctgt
ccacgaaaccaccaatccttgcctccgtctcccagtgtaatcctgggagt
ttctggcatgtgccaccatgcccagtttgagtttgttctagaacttcatc
tataggacatcatagccaactccttcctagttcatatcttgcctctttcc
atcagtcggcctaggagaagtttctaagtgatggtcacgggcagctgtag
ttttggggccctaaaactttggggtacctctgcacgaggctctgccatca
cttttcttgtgctgtccgctggcatcccaaagtatccacctgcctggctg
gttccctgttctagggagggttcctcacctggccaaccacatctttacct
tccttatgaagctgcgtccctatttcgctgggatgaaaagctagaaacag
agatggggggggggcgcataggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101532475_101533390
seq2: B6Ng01-123E15.b_46_958

seq1  GAATTCCATGTCAAACTCACCCTAGGACCAGGTACTCATGTATCGCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTCAAACTCACCCTAGGACCAGGTACTCATGTATCGCACAC  50

seq1  ATACACACATAAGAAAAAAAAAGTTTTACTGACCATCGTCCATGACAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACATAAGAAAAAAAAAGTTTTACTGACCATCGTCCATGACAGAG  100

seq1  GTGATAGATCTAATCTAAACATAGGAAATGCTGGCTGTGGTGGTGCATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGATCTAATCTAAACATAGGAAATGCTGGCTGTGGTGGTGCATGC  150

seq1  ATGCCGTCAATTTTAGGACTGGAGAGGCAGGTGGATTTCTGAGTTCGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCGTCAATTTTAGGACTGGAGAGGCAGGTGGATTTCTGAGTTCGAGG  200

seq1  CCCTCCTGGTCTATAGAGTGAGTTCCAAGACAGCCAGAGCTACACAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTGGTCTATAGAGTGAGTTCCAAGACAGCCAGAGCTACACAGAGA  250

seq1  AACACTATCTCAAAAAACAAAACAAGATAAGAAAAAAAAAAGAGGAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTATCTCAAAAAACAAAACAAGATAAGAAAAAAAAAAGAGGAAGAT  300

seq1  GAATGTAGAAAAACACCCTAATTTAAACTTACGTGCTAAACATTCTGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAGAAAAACACCCTAATTTAAACTTACGTGCTAAACATTCTGAAC  350

seq1  AAGTTTTAAATCTATTCTTCTGCTTGTCTTTCTTTGCATATGGATAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTAAATCTATTCTTCTGCTTGTCTTTCTTTGCATATGGATAAAAA  400

seq1  GATGTGTCTCTCTGACCATACAAGGGCTTACATAAGGTGTCCTGTTTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTCTCTCTGACCATACAAGGGCTTACATAAGGTGTCCTGTTTAGC  450

seq1  TTTGCCGTTTTCATTTATATCTTGGACATGATTCATTGCTGACACCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCGTTTTCATTTATATCTTGGACATGATTCATTGCTGACACCTTTG  500

seq1  AGTTTTCTTACTCTTTTTGATGACGACATGAAATTTCATTATGTGACTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTTACTCTTTTTGATGACGACATGAAATTTCATTATGTGACTGC  550

seq1  ATCATCATTTTATTAATGAATTTATTATTGAACTCACCATGGGAATGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCATTTTATTAATGAATTTATTATTGAACTCACCATGGGAATGAAC  600

seq1  TAAGAACCTCCTTGCATGGTTTTTGTTTTTTGGTTTTTTGTTTGTTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACCTCCTTGCATGGTTTTTGTTTTTTGGTTTTTTGTTTGTTTGTT  650

seq1  GGTTGGTTGGTTTGTTTTGTACACTTGAGGAAAATTCCTTGTGCCAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTTGGTTTGTTTTGTACACTTGAGGAAAATTCCTTGTGCCAAAGG  700

seq1  GATTTACATGGACAAGTTCAAGGTGGCTTAGAAGGTAGAGTCACCTGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACATGGACAAGTTCAAGGTGGCTTAGAAGGTAGAGTCACCTGCTG  750

seq1  CTGACCCTGACAACCTGGGTGTGACCCCCACATGAGGGAGAAAGGGGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCTGACAACCTGGGTGTGACCCCCACATGAGGGAGAAAGGGGACT  800

seq1  GGCCCCTGAAATGTATCCCTTGAC-CCCTGAAACGTGTCCTCAGACTTCC  849
      |||||||||||||||||||||||| ||||||||||||| ||||||| |||
seq2  GGCCCCTGAAATGTATCCCTTGACTCCCTGAAACGTGT-CTCAGAC-TCC  848

seq1  ATAATTATACCAAGGCTCACTCGCAGACACACACATGCACATACAAAAAA  899
      |||||||||||||||||||||||||||| |||  ||||||||||||||| 
seq2  ATAATTATACCAAGGCTCACTCGCAGACGCACGAATGCACATACAAAAA-  897

seq1  GGGTTTTTATAGACAGG  916
       || | |||||||||||
seq2  -GGGTCTTATAGACAGG  913

seq1: chr11_101663474_101664239
seq2: B6Ng01-123E15.g_68_841 (reverse)

seq1  TTCCTGTGCGCCCCCCCCCCATCTCTGTTTCTAGCTATTCATCCCAGCGA  50
      ||||| |||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCCTATGCGCCCCCCCCCCATCTCTGTTTCTAGCTTTTCATCCCAGCGA  50

seq1  AATAGGGACGCAGCTTCATAAGG-AGGTAAAGATGTGGTTGGCCAGCTGA  99
      ||||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  AATAGGGACGCAGCTTCATAAGGAAGGTAAAGATGTGGTTGGCCAGGTGA  100

seq1  GGAACCCTCCCTAGAACA-GGAACCAGCCAGGCAGGTGGATACTTTGGGA  148
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGAACCCTCCCTAGAACAGGGAACCAGCCAGGCAGGTGGATACTTTGGGA  150

seq1  TG-CAGCGGACAGCACA--GAAAGTGATGGCAGAGCCTCGTGCAGAGGTA  195
      || ||||||||||||||   ||||||||||||||||||||||||||||||
seq2  TGCCAGCGGACAGCACAAGAAAAGTGATGGCAGAGCCTCGTGCAGAGGTA  200

seq1  CCCCAA--GTTTAGGGCCCC-AAACTACAGCTGCCCGTGACCATCACTTA  242
      ||||||   ||||||||||| |||||||||||||||||||||||||||||
seq2  CCCCAAAGTTTTAGGGCCCCAAAACTACAGCTGCCCGTGACCATCACTTA  250

seq1  GAAACTTCTCCTAGGCCGACTGATGGAAAGAGGCAAGATATGAACTAGGA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTCTCCTAGGCCGACTGATGGAAAGAGGCAAGATATGAACTAGGA  300

seq1  AGGAGTTGGCTATGATGTCCTATAGATGAAGTTCTAGAACAAACTCAAAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTGGCTATGATGTCCTATAGATGAAGTTCTAGAACAAACTCAAAC  350

seq1  TGGGCATGGTGGCACATGCCAGAAACTCCCAGGATTACACTGGGAGACGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATGGTGGCACATGCCAGAAACTCCCAGGATTACACTGGGAGACGG  400

seq1  AGGCAAGGATTGGTGGTTTCGTGGACAGCTTTGTCTACATAGTGAGTAGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGGATTGGTGGTTTCGTGGACAGCTTTGTCTACATAGTGAGTAGG  450

seq1  AGACTAGCCTGGGCTACATGAAATGCTGTTTCACTATCCCCCCCCCCCGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGCCTGGGCTACATGAAATGCTGTTTCACTATCCCCCCCCCCCGA  500

seq1  AAAACTACAGCAAAGGGACAGATTTAACCAATGGGTGGTGACAGGATCGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACAGCAAAGGGACAGATTTAACCAATGGGTGGTGACAGGATCGG  550

seq1  GAATAATAAGTCTCTTGTGGGAAAGAGAATAGTTTATGGGCTGAGAAGAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATAAGTCTCTTGTGGGAAAGAGAATAGTTTATGGGCTGAGAAGAG  600

seq1  ACACAAATAACCTTTGTTGGTGTTAGAACTGCTCTGTTTTGGTTGTTGTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATAACCTTTGTTGGTGTTAGAACTGCTCTGTTTTGGTTGTTGTT  650

seq1  GTTGTTGTTTTAATTCGAGTGAGCACACAGATGTTTACAGCTGTGCCTGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTTTAATTCGAGTGAGCACACAGATGTTTACAGCTGTGCCTGG  700

seq1  GATTTGTTTCAGGGTCTTCTGAGGATACCCACAATTCACTGTGTAGCATG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTTTCAGGGTCTTCTGAGGATACCCACAATTCACTGTGTAGCATG  750

seq1  GGGTGCAGTGTTGGGGCAGAATTC  766
      ||||||||||||||||||||||||
seq2  GGGTGCAGTGTTGGGGCAGAATTC  774