BAC Information

Click to search

BAC

Clone NameB6Ng01-125B03
Chromosome11 (Build37)
Map Location 11,092,961 - 11,094,070
singlet/doubletsinglet
Overlap geneVwc2
Upstream geneLOC382483
Downstream geneZpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1, Fignl1, Ddc, Grb10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125B03.bB6Ng01-125B03.g
ACCDH927813DH927814
length1,0851,268
definitionDH927813|Mus musculus domesticus DNA, BAC clone: B6Ng01-125B03, 5' end.DH927814|Mus musculus domesticus DNA, BAC clone: B6Ng01-125B03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaactaggaacccagttcccaggcttgtgaggtaggtactttt
atggctgagctatctccacagcctgtttgttaccaggtgttttctcttct
ttctacagtgtaggaacagtaatactttaatacagtaatatttttcttca
gattgggtggagggagttgcccaatgctatccaattatttacttgcgttg
aatgaagatgatttctttagtttctgccgttgttaccatcctgccttgtt
gatggaaattactgtgtatgaggtttgctttgtacaaagaaggattttga
accttctgtaatagtcatttgcttcaggactctcttctggggaacattta
cagccagaacattagggcagcctcttttgaacatccctttacttccttat
atattggaattagagatcaaactagagtctcaagcatcaaagtatcttaa
ttgaattcaatcctcaattaaataagatgtagttcttattccaccctgtt
tcttcaatatacactttttttgagagcaaagtttttcttcttcttcttcc
tccttttgattaaacttttgtttttgatgtatgggttaacaaagcattct
tgttaacacatacaaaaccacccatccataggcacacagatacaaacaca
aaggaagctgcaaatcgtttgcaaattgacagatttataaaactttaaac
aaggttactcataagttactccttagtgtttgcttaggatcaatagaagc
cagcatgaaaatattcactgagatttatttattattgacgtggactggaa
tggaactggacatccatcaacagcaggatggatttacaaattgtggttat
ttgtaaatagaacgaaaaatcattaaagggaaacaaaatccaatacaaca
acaacagggatgaagctcaatatcattatattggatgaaaacagacacac
tttgagggattacatttaaatgatattttagaacagaaaaataccctatg
ggatagaattgacagtgagtgatgcaaattgagtcatctcattaataaga
tgcagtctacactagcctgtctattactttgtttt
gaattctcatgtctttttgtaacaccattattgctttttaattccctttg
tccctccttctgtatttatcttatcctcttcccccaaagtaacaccctct
cttttcccatttgcccagtcatatcctttgtaccctgttgtttccctctc
tattcctcccaatgattgttctcttttactttcctgggttctgcagtaac
tccaagatatgtactcatatatgaagagctggtgctaagatcctctgata
tgaggaccatgtgacatttgtcattctgggtatgaattatcatacttaat
atgatcttttctagttctatgcatttaacaacaaagttcatgatttcatt
ttctttacagctaaacagtatttcacagtactagatgtaccatattttca
ttgcccatccatctctttaaagacattttgattattaccatttcctagcc
attgtgaataaagcagtagcaaacacagatgagtaagtatctatgcatta
ggatgtggagtcctttggccatgtgtcaggaagtctctggctgtatcata
tggtagctctgcctttgctttttgagattttttccatgctggttttgctg
ctatagcagtttgtaatcctaataacacgaaagagggttccatttccctc
catccactccataattttttgttagttgttttgttgatttttgccattct
tactggggtgaaatcaaatctcagaggtgtttgaatttacatttttgata
actgttaggggtcataaaatttttttgagttatttcttggtcacatatta
ttttttcttttttacatcattatttttattaaactaataaaatttatttt
aaaatatacaactcagtattgacatttttaagtcatcaaaataacttata
atagttaaatgcctattaatatatattatctactgaaactaaagtaatat
gcactcaccagttttcaactatttggaacattaagcatgatagaagtaga
aaaaaatttcttatgaaggtctcctttgaaaggaaattggtgaacaagtt
cctgattaaacagaattgttccattctccaagggaagaatacctcagaat
aactggtgggaattcatagaatgacctggatggttgctcctgtttcttgt
ttgtgcaatgtgaaagaatatggccatagggtcctcttgagagtatacaa
actggctaacctatctggcctggctctttcattgtgggagagcctctatg
acccactactccagtcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_11092961_11094070
seq2: B6Ng01-125B03.b_49_1133

seq1  GAATTCCAAACTAGGAACCCAGTTCCCAGGCTTGTGAGGTAGGTACTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACTAGGAACCCAGTTCCCAGGCTTGTGAGGTAGGTACTTTT  50

seq1  ATGGCTGAGCTATCTCCACAGCCTGTTTGTTACCAGGTGTTTTCTCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGAGCTATCTCCACAGCCTGTTTGTTACCAGGTGTTTTCTCTTCT  100

seq1  TTCTACAGTGTAGGAACAGTAATACTTTAATACAGTAATATTTTTCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAGTGTAGGAACAGTAATACTTTAATACAGTAATATTTTTCTTCA  150

seq1  GATTGGGTGGAGGGAGTTGCCCAATGCTATCCAATTATTTACTTGCGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGTGGAGGGAGTTGCCCAATGCTATCCAATTATTTACTTGCGTTG  200

seq1  AATGAAGATGATTTCTTTAGTTTCTGCCGTTGTTACCATCCTGCCTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGATGATTTCTTTAGTTTCTGCCGTTGTTACCATCCTGCCTTGTT  250

seq1  GATGGAAATTACTGTGTATGAGGTTTGCTTTGTACAAAGAAGGATTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAATTACTGTGTATGAGGTTTGCTTTGTACAAAGAAGGATTTTGA  300

seq1  ACCTTCTGTAATAGTCATTTGCTTCAGGACTCTCTTCTGGGGAACATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTGTAATAGTCATTTGCTTCAGGACTCTCTTCTGGGGAACATTTA  350

seq1  CAGCCAGAACATTAGGGCAGCCTCTTTTGAACATCCCTTTACTTCCTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGAACATTAGGGCAGCCTCTTTTGAACATCCCTTTACTTCCTTAT  400

seq1  ATATTGGAATTAGAGATCAAACTAGAGTCTCAAGCATCAAAGTATCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGAATTAGAGATCAAACTAGAGTCTCAAGCATCAAAGTATCTTAA  450

seq1  TTGAATTCAATCCTCAATTAAATAAGATGTAGTTCTTATTCCACCCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTCAATCCTCAATTAAATAAGATGTAGTTCTTATTCCACCCTGTT  500

seq1  TCTTCAATATACACTTTTTTTGAGAGCAAAGTTTTTCTTCTTCTTCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAATATACACTTTTTTTGAGAGCAAAGTTTTTCTTCTTCTTCTTCC  550

seq1  TCCTTTTGATTAAACTTTTGTTTTTGATGTATGGGTTAACAAAGCATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGATTAAACTTTTGTTTTTGATGTATGGGTTAACAAAGCATTCT  600

seq1  TGTTAACACATACAAAACCACCCATCCATAGGCACACAGATACAAACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACACATACAAAACCACCCATCCATAGGCACACAGATACAAACACA  650

seq1  AAGGAAGCTGCAAATCGTTTGCAAATTGACAGATTTATAAAACTTTAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGCTGCAAATCGTTTGCAAATTGACAGATTTATAAAACTTTAAAC  700

seq1  AAGGTTACTCATAAGTTACTCCTTAGTGTTTGCTTAGGATCAATAGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTACTCATAAGTTACTCCTTAGTGTTTGCTTAGGATCAATAGAAGC  750

seq1  CAGCATGAAAATATTCACTGAGATTTATTTATTATTGACGTGGACTGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGAAAATATTCACTGAGATTTATTTATTATTGACGTGGACTGGAA  800

seq1  TGGAACTGGACATCCATCAACAGCAGGATGGATTTACAAATTGTGGTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTGGACATCCATCAACAGCAGGATGGATTTACAAATTGTGGTTAT  850

seq1  TTGTAAAATAGAACGAAAAATCATTAAAGGGAAACAAAATCCAATACAAA  900
      |||| |||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGT-AAATAGAACGAAAAATCATTAAAGGGAAACAAAATCCAATAC-AA  898

seq1  CAACAACAGGGATGAAGCTCAATATCATTATATTGGATGAAAACAGACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAGGGATGAAGCTCAATATCATTATATTGGATGAAAACAGACAC  948

seq1  AACTTTGAGGGGATTACATTTAAATGATATTTAGAAACAAGAAAAATAAC  1000
       ||||||| |||||||||||||||||||||||   ||| ||||||||| |
seq2  -ACTTTGA-GGGATTACATTTAAATGATATTTTAGAAC-AGAAAAATACC  995

seq1  CTATGGGGATAGAAATTGACAGGTAGAGTTGAATGCAAATTGAGTTCAAT  1050
      |||| ||||||| |||||||||  || |    |||||||||||| |||  
seq2  CTAT-GGGATAG-AATTGACAGTGAGTG----ATGCAAATTGAG-TCA--  1036

seq1  CCTCAATTAAATAAGATGCAGGTCTTACACTAGCCTGTTTCTTTAATATA  1100
       ||||  | ||||||||||| ||| ||||||||||||| | |      ||
seq2  TCTCA--TTAATAAGATGCA-GTC-TACACTAGCCTGTCTAT------TA  1076

seq1  CTTTTGTTTT  1110
      | ||||||||
seq2  C-TTTGTTTT  1085