BAC Information

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BAC

Clone NameB6Ng01-126N07
Chromosome11 (Build37)
Map Location 119,111,504 - 119,307,364
singlet/doubletdoublet
Overlap geneCcdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511
Upstream geneUsp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16
Downstream geneRnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126N07.bB6Ng01-126N07.g
ACCDH929100DH929101
length1,0061,026
definitionDH929100|Mus musculus domesticus DNA, BAC clone: B6Ng01-126N07, 5' end.DH929101|Mus musculus domesticus DNA, BAC clone: B6Ng01-126N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,111,504 - 119,112,509)(119,306,327 - 119,307,364)
sequence
gaattcaatatgtagaccaaggtgttctcagagtcacggtgatcctcctg
cctctgcctctcacatgctgggattaaggacatgaagcagccaggagcgg
aggcagggggacctctaagtttgaggccagcctggtctacagagcaagtt
ccaggacaaccagggctacacagagaaaccctgtctcaagaaataaacag
gagctggagagatagctcagggaataagagcactgactgctcttccagag
gccctgagttcaactcccagcaaccacatggtggctcacaaccatctata
acaggatctgatgcattcttctggtatgtttgaagaaagtgacagtgtac
gcatataaataaataaaataaataaatacatcttttaaaaaaaagacgtg
tctcaaaaaaataaataaacaaaaaaaccagcattccagcccccaatccg
ttttttgagagagagacaaagagaatgtcttttgtggcccacacttgagc
ctcccatcagctagaatcacaggcatgggccacaacactgctttatttta
tgcacgctgtctccattgggtaagcaggccccttgtgctttgtggtggtc
cttgaaggtccttgagatgcagggccagttagcttcctcctgatggcatg
cagggatctcttcatataccagtcgaatgtcgaggacactgcagtctagc
ccagccaaagacggagaaagctcacacctatgtcccttcgtgccctcagg
tgacacatctttcaaaattgacggcgatatcgcccaggccaccctggaca
tcaccaacaccaactgcaaaatagacatgcataagaagacgctggcagag
atggacaaggaggtaaagaggttcaacgatctcatcaccacagcgagagc
gagatcgcccggcgcaccatcctcatttgagaggaagcagagcctcatca
ccttcttcaacaagcagctggaacagatggtggtcggacttgggggtgag
gggccg
gaattccttgaggcatgggcgaggccagggccacacagaaaaaaacatgc
agagaggtataattctaaatggccagcaaggctgcctgaggagactaagg
accatgctgggaagcttttatgagagggatagagtagtgggtacaggggc
agagcgggacgcctagacacgacccacaacagagtgactcagccttccag
gtcattaaccagttctagttacagctctgccaacgcacctgacaagggtg
agccctaacgaatggagctagcagggcacctcaccggacatccttaagga
acgaatattcagtgtcatattgctgtagtgacagcaccacaggtttcgag
gccagtcctctcagctcagatgctaggacatcacagtcatttccagtcag
cagtctggagaaagtggtgatctgcaaagagggagatgagcgttgacaag
aacgcaatgggaaggcccatcttctcaagacagaacagagaaacatgagg
aggttgggccctgctcatcatgggtgcacatggctcagtgtgcagaaaga
aaacacaggcccagagtatggacaaagacaaggactgagaggttaagaga
agagatatgccctgacagatgacttagtctcctccctgctttgggcccct
ctgtagtctctggatactttaggactcaccacaaatgcctcttcttataa
accagtggttcccaaccttcctaacgctgcgaccctttaatacagcttcc
tcatattgtggtgctcccaactataaaagttatttttgtgatacttcata
atatattttgattctgttacaaatcggaatacgtgacccctgtgaaagga
gctgaggcccacaagttgacatggtgtcagccattgtttctctcttgcct
ccactcattctcatgaatacacctcagcaccacagaactccaatatcctg
gaggtgtgctgacccctgactcagttctacccattgctctgacttcgagc
ttcaacccctctttcatctaccaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_119111504_119112509
seq2: B6Ng01-126N07.b_52_1057

seq1  GAATTCAATATGTAGACCAAGGTGTTCTCAGAGTCACGGTGATCCTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATGTAGACCAAGGTGTTCTCAGAGTCACGGTGATCCTCCTG  50

seq1  CCTCTGCCTCTCACATGCTGGGATTAAGGACATGAAGCAGCCAGGAGCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCTCACATGCTGGGATTAAGGACATGAAGCAGCCAGGAGCGG  100

seq1  AGGCAGGGGGACCTCTAAGTTTGAGGCCAGCCTGGTCTACAGAGCAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGGGACCTCTAAGTTTGAGGCCAGCCTGGTCTACAGAGCAAGTT  150

seq1  CCAGGACAACCAGGGCTACACAGAGAAACCCTGTCTCAAGAAATAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACAACCAGGGCTACACAGAGAAACCCTGTCTCAAGAAATAAACAG  200

seq1  GAGCTGGAGAGATAGCTCAGGGAATAAGAGCACTGACTGCTCTTCCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGAGAGATAGCTCAGGGAATAAGAGCACTGACTGCTCTTCCAGAG  250

seq1  GCCCTGAGTTCAACTCCCAGCAACCACATGGTGGCTCACAACCATCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAGTTCAACTCCCAGCAACCACATGGTGGCTCACAACCATCTATA  300

seq1  ACAGGATCTGATGCATTCTTCTGGTATGTTTGAAGAAAGTGACAGTGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATCTGATGCATTCTTCTGGTATGTTTGAAGAAAGTGACAGTGTAC  350

seq1  GCATATAAATAAATAAAATAAATAAATACATCTTTTAAAAAAAAGACGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATAAATAAATAAAATAAATAAATACATCTTTTAAAAAAAAGACGTG  400

seq1  TCTCAAAAAAATAAATAAACAAAAAAACCAGCATTCCAGCCCCCAATCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAAAATAAATAAACAAAAAAACCAGCATTCCAGCCCCCAATCCG  450

seq1  TTTTTTGAGAGAGAGACAAAGAGAATGTCTTTTGTGGCCCACACTTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGAGAGAGACAAAGAGAATGTCTTTTGTGGCCCACACTTGAGC  500

seq1  CTCCCATCAGCTAGAATCACAGGCATGGGCCACAACACTGCTTTATTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATCAGCTAGAATCACAGGCATGGGCCACAACACTGCTTTATTTTA  550

seq1  TGCACGCTGTCTCCATTGGGTAAGCAGGCCCCTTGTGCTTTGTGGTGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGCTGTCTCCATTGGGTAAGCAGGCCCCTTGTGCTTTGTGGTGGTC  600

seq1  CTTGAAGGTCCTTGAGATGCAGGGCCAGTTAGCTTCCTCCTGATGGCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGTCCTTGAGATGCAGGGCCAGTTAGCTTCCTCCTGATGGCATG  650

seq1  CAGGGATCTCTTCATATACCAGTCGAATGTCGAGGACACTGCAGTCTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATCTCTTCATATACCAGTCGAATGTCGAGGACACTGCAGTCTAGC  700

seq1  CCAGCCAAAGACGGAGAAAGCTCACACCTATGTCCCTTCGTGCCCTCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAAAGACGGAGAAAGCTCACACCTATGTCCCTTCGTGCCCTCAGG  750

seq1  TGACACATCTTTCAAAAATTGACGGCGATATCGCCCAGGCCACCCTGGAC  800
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGACACATCTTTC-AAAATTGACGGCGATATCGCCCAGGCCACCCTGGAC  799

seq1  ATCACCAACACCAACTGCAAAATAGACATGCATAAGAAGACGCTGGCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAACACCAACTGCAAAATAGACATGCATAAGAAGACGCTGGCAGA  849

seq1  GATGGACAAGGAGGTAAAGAGGTTCAACGATCTCATCACCAACAGCGAGA  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GATGGACAAGGAGGTAAAGAGGTTCAACGATCTCATCACC-ACAGCGAGA  898

seq1  GCGAGATCGCCCGGCGCACCATCCTCA-TTGAGAGGAAGCAGAGCCTCAT  949
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCGAGATCGCCCGGCGCACCATCCTCATTTGAGAGGAAGCAGAGCCTCAT  948

seq1  CAACTTCTTCAACAAGCAGCTGGAACAGATGGT-GTCGGAGCTGGGGGTG  998
      || |||||||||||||||||||||||||||||| ||||||  ||||||||
seq2  CACCTTCTTCAACAAGCAGCTGGAACAGATGGTGGTCGGACTTGGGGGTG  998

seq1  AGGCGCCG  1006
      ||| ||||
seq2  AGGGGCCG  1006

seq1: chr11_119306327_119307364
seq2: B6Ng01-126N07.g_69_1094 (reverse)

seq1  GGGTGGTAGGATTGGAAAGGAGGGGATTGGAAGCTCAGAGGTCAGAGCAA  50
      |||||||| |||  |||| ||||||  | ||||||| || ||||||||||
seq2  GGGTGGTA-GAT--GAAA-GAGGGG--TTGAAGCTC-GAAGTCAGAGCAA  43

seq1  TGGGTAAGAACTGGAGTTACAGGGGTCAGCACACCCTCAGGATATTGGAG  100
      ||||| |||||| ||||  ||||||||||||||||  |||||||||||||
seq2  TGGGT-AGAACT-GAGT--CAGGGGTCAGCACACCTCCAGGATATTGGAG  89

seq1  -TCTGTGGTGCTGAGTGTG-ATTCATTGAGAATGAAGTGAGGGCAAGAGA  148
       |||||||||||||| ||| ||||| |||||||| ||||  |||||||||
seq2  TTCTGTGGTGCTGAG-GTGTATTCA-TGAGAATG-AGTGGAGGCAAGAGA  136

seq1  G-AACAATGGCTGACACCATGTCAACTTGTGGGCCTCAGCTCCTTTCACA  197
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATGGCTGACACCATGTCAACTTGTGGGCCTCAGCTCCTTTCACA  186

seq1  GGGGTCACGTA-TCCGATTTGTAACAGAATCAAAATTATAATTATGAAGT  246
      ||||||||||| ||||||||||||||||||||||| ||| ||||||||||
seq2  GGGGTCACGTATTCCGATTTGTAACAGAATCAAAA-TAT-ATTATGAAGT  234

seq1  ATCAACAAAAATAACTTTTATAGTTGGGAGCACCACAATATGAGG-AGCT  295
      ||| ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATC-ACAAAAATAACTTTTATAGTTGGGAGCACCACAATATGAGGAAGCT  283

seq1  GTATTAAAGGGTCGCAGCGTTAGGAAGGTTGGGAACCACTGGTTTATAAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAAGGGTCGCAGCGTTAGGAAGGTTGGGAACCACTGGTTTATAAG  333

seq1  AAGAGGCATTTGTGGTGAGTCCTAAAGTATCCAGAGACTACAGAGGGGCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCATTTGTGGTGAGTCCTAAAGTATCCAGAGACTACAGAGGGGCC  383

seq1  CAAAGCAGGGAGGAGACTAAGTCATCTGTCAGGGCATATCTCTTCTCTTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAGGGAGGAGACTAAGTCATCTGTCAGGGCATATCTCTTCTCTTA  433

seq1  ACCTCTCAGTCCTTGTCTTTGTCCATACTCTGGGCCTGTGTTTTCTTTCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCAGTCCTTGTCTTTGTCCATACTCTGGGCCTGTGTTTTCTTTCT  483

seq1  GCACACTGAGCCATGTGCACCCATGATGAGCAGGGCCCAACCTCCTCATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTGAGCCATGTGCACCCATGATGAGCAGGGCCCAACCTCCTCATG  533

seq1  TTTCTCTGTTCTGTCTTGAGAAGATGGGCCTTCCCATTGCGTTCTTGTCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTTCTGTCTTGAGAAGATGGGCCTTCCCATTGCGTTCTTGTCA  583

seq1  ACGCTCATCTCCCTCTTTGCAGATCACCACTTTCTCCAGACTGCTGACTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCATCTCCCTCTTTGCAGATCACCACTTTCTCCAGACTGCTGACTG  633

seq1  GAAATGACTGTGATGTCCTAGCATCTGAGCTGAGAGGACTGGCCTCGAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGACTGTGATGTCCTAGCATCTGAGCTGAGAGGACTGGCCTCGAAA  683

seq1  CCTGTGGTGCTGTCACTACAGCAATATGACACTGAATATTCGTTCCTTAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGTGCTGTCACTACAGCAATATGACACTGAATATTCGTTCCTTAA  733

seq1  GGATGTCCGGTGAGGTGCCCTGCTAGCTCCATTCGTTAGGGCTCACCCTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCCGGTGAGGTGCCCTGCTAGCTCCATTCGTTAGGGCTCACCCTT  783

seq1  GTCAGGTGCGTTGGCAGAGCTGTAACTAGAACTGGTTAATGACCTGGAAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTGCGTTGGCAGAGCTGTAACTAGAACTGGTTAATGACCTGGAAG  833

seq1  GCTGAGTCACTCTGTTGTGGGTCGTGTCTAGGCGTCCCGCTCTGCCCCTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTCACTCTGTTGTGGGTCGTGTCTAGGCGTCCCGCTCTGCCCCTG  883

seq1  TACCCACTACTCTATCCCTCTCATAAAAGCTTCCCAGCATGGTCCTTAGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACTACTCTATCCCTCTCATAAAAGCTTCCCAGCATGGTCCTTAGT  933

seq1  CTCCTCAGGCAGCCTTGCTGGCCATTTAGAATTATACCTCTCTGCATGTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGGCAGCCTTGCTGGCCATTTAGAATTATACCTCTCTGCATGTT  983

seq1  TTTTTCTGTGTGGCCCTGGCCTCGCCCATGCCTCAAGGAATTC  1038
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGTGTGGCCCTGGCCTCGCCCATGCCTCAAGGAATTC  1026