BAC Information

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BAC

Clone NameB6Ng01-126O06
Chromosome11 (Build37)
Map Location 118,578,308 - 118,735,535
singlet/doubletdoublet
Overlap geneD11Bwg0517e
Upstream geneTnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik
Downstream geneEnpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126O06.bB6Ng01-126O06.g
ACCDH929146DH929147
length1,121979
definitionDH929146|Mus musculus domesticus DNA, BAC clone: B6Ng01-126O06, 5' end.DH929147|Mus musculus domesticus DNA, BAC clone: B6Ng01-126O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,578,308 - 118,579,440)(118,734,553 - 118,735,535)
sequence
gaattcctgcaggagcggcttgcctcatcgagattagtccccggtgcaat
ctgagctcatttcctatgaatgaggaacgtgggacaaagcacgctgcctg
tcctctgaggttctagcgatgctgatttcggtttgttattttaactctct
ttattttttagatttgtgttcatgagtgttttgcctgcatgtatctaagt
accccatggaggcaagaagagggtgtccagttcttggaaatggacttaca
gggagttgtgaggtgccacatgtatgctagagaccaaacccaggttctca
gcaagagccatcttaaacactgggccatctttagcctgtatcagtgctct
tgaatagcatccctttcccagcctgccttggtctccagaactgttgcctc
ttccataatcaggggaagccacaaagacaggagtgctccacatgggaagg
gggagatttccctgtctggacttcacaaagctgtccctgtccagtatggg
gttatggggcccaggaagcaagctttgaagccacaccgctgtgctctgcg
tccctttgaggtttctctgtgcatctgcatccctggggtttcctagttca
tcccgcctgtgtttaaagatgggaaacagagcatgccaggatgccacgtt
tggcctcattggtatgtgatgtctgactcttgaattctggcttcatctcc
catgcaggatgacttaggagcccacccacaggtctcagaatgaatggcgc
cactctgcagggatactgctggaactggtctgacttggtcgcaagcagca
gttcatgtgagcactcacacttcagcccagctggcagtttctcagccctg
tggtcagcaacctcagctggtctccaggtttggaatgctgccctttaaaa
tcacaagggaataattaaaaccatagggtcaatatgctcccatctatcca
ggaagtcgttgggtaaacttcaactaatagtttaaaggagcccagggctc
acggaagttgcatacagcatgtctgactgcagtagcaatgcatgtgtgtc
ctgtgttctagctgcaaccatgcagtcactgcatgttctcttgcaatgct
gtctcggacatacatgcttac
gaattcactccgttgcgtgtctagccaggactcatggaactggactcctc
cctacaggaccagagacctcctgccttgcctcgcacgggtgtggccagga
cactgggcctgataggaatgagtctccttttcctgggaggagcagggacg
agcccgcaggctgtgaggatgcctgtgcagctgaggtgtttgcttctggg
actctgtaccatagaacacttgtcagagacgcaaccggccttcagcctca
atggtgacattgttaaggtagaacagatgaatgtgtagtgcctttttagg
ttggggtctaaggttggtctcttactcctgacgttggggactctctcggt
ctgcctgtcactgaatctagagtggtattctctgcttacctctgtcctct
ggaagcgtctgatacagacaggggcctgatacatgtgtggggccacaggg
caaggccgcccaaccagtgccttgtacaccacaggcctcgatctcttcct
agagtcccctaccaggctctgcagccccgaggccactttgaggtcttcgg
gaaatgtgaccaagccccagtgaggcacagggaaattatttttttttaaa
tagtgaaaaggcttaagaagacttagttgtcttagggaaatcttgactgg
gactctggcctcctaaagcatttggggactactctcttaaagttattgtc
acagcttaaggtattgctcaagtctttctttggggacagagtttgttttg
ggggatagtgatgtaccatttgtccctgtctagggaagatctgtcttttc
agagtcagatggacttggaaagcatttcatccctctgagcctcagttctg
catctgtgaaggtggttgatccattactggggctgttgagatgatgatag
ctggggtgagaaattttcagcagtgtgcagtgcttaggccagccaggtca
cattctacaatccattgattctggcaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_118578308_118579440
seq2: B6Ng01-126O06.b_49_1169

seq1  GAATTCCTGCAGGAGCGGCTTGCCTCATCGAGATTAGTCCCCGGTGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCAGGAGCGGCTTGCCTCATCGAGATTAGTCCCCGGTGCAAT  50

seq1  CTGAGCTCATTTCCTATGAATGAGGAACGTGGGACAAAGCACGCTGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCATTTCCTATGAATGAGGAACGTGGGACAAAGCACGCTGCCTG  100

seq1  TCCTCTGAGGTTCTAGCGATGCTGATTTCGGTTTGTTATTTTAACTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGAGGTTCTAGCGATGCTGATTTCGGTTTGTTATTTTAACTCTCT  150

seq1  TTATTTTTTAGATTTGTGTTCATGAGTGTTTTGCCTGCATGTATCTAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTAGATTTGTGTTCATGAGTGTTTTGCCTGCATGTATCTAAGT  200

seq1  ACCCCATGGAGGCAAGAAGAGGGTGTCCAGTTCTTGGAAATGGACTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATGGAGGCAAGAAGAGGGTGTCCAGTTCTTGGAAATGGACTTACA  250

seq1  GGGAGTTGTGAGGTGCCACATGTATGCTAGAGACCAAACCCAGGTTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTGTGAGGTGCCACATGTATGCTAGAGACCAAACCCAGGTTCTCA  300

seq1  GCAAGAGCCATCTTAAACACTGGGCCATCTTTAGCCTGTATCAGTGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGCCATCTTAAACACTGGGCCATCTTTAGCCTGTATCAGTGCTCT  350

seq1  TGAATAGCATCCCTTTCCCAGCCTGCCTTGGTCTCCAGAACTGTTGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGCATCCCTTTCCCAGCCTGCCTTGGTCTCCAGAACTGTTGCCTC  400

seq1  TTCCATAATCAGGGGAAGCCACAAAGACAGGAGTGCTCCACATGGGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAATCAGGGGAAGCCACAAAGACAGGAGTGCTCCACATGGGAAGG  450

seq1  GGGAGATTTCCCTGTCTGGACTTCACAAAGCTGTCCCTGTCCAGTATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATTTCCCTGTCTGGACTTCACAAAGCTGTCCCTGTCCAGTATGGG  500

seq1  GTTATGGGGCCCAGGAAGCAAGCTTTGAAGCCACACCGCTGTGCTCTGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGGGCCCAGGAAGCAAGCTTTGAAGCCACACCGCTGTGCTCTGCG  550

seq1  TCCCTTTGAGGTTTCTCTGTGCATCTGCATCCCTGGGGTTTCCTAGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTGAGGTTTCTCTGTGCATCTGCATCCCTGGGGTTTCCTAGTTCA  600

seq1  TCCCGCCTGTGTTTAAAGATGGGAAACAGAGCATGCCAGGATGCCACGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCCTGTGTTTAAAGATGGGAAACAGAGCATGCCAGGATGCCACGTT  650

seq1  TGGCCTCATTGGTATGTGATGTCTGACTCTTGAATTCTGGCTTCATCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCATTGGTATGTGATGTCTGACTCTTGAATTCTGGCTTCATCTCC  700

seq1  CATGCAGGATGACTTAGGAGCCCACCCACAGGTCTCAGAATGAATGGCGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGGATGACTTAGGAGCCCACCCACAGGTCTCAGAATGAATGGCGC  750

seq1  CACTCTGCAGGGATACTGCTGGAACTGGTCTGACTTGGTCGCAAGCAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGCAGGGATACTGCTGGAACTGGTCTGACTTGGTCGCAAGCAGCA  800

seq1  GTTCATGTGAGCACTCACACTTCAGCCCAGCTGGCAGTTTCTCAGCCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGTGAGCACTCACACTTCAGCCCAGCTGGCAGTTTCTCAGCCCTG  850

seq1  TGGTCAGCAACCTCAGCTGGTCTCCAGGTTTGGAATGCTGCCCTTTAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGCAACCTCAGCTGGTCTCCAGGTTTGGAATGCTGCCCTTTAAAA  900

seq1  TCACAAGGGAATAATAAAAACCATAGGGTCAAATATGCTCCCATCTATCC  950
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  TCACAAGGGAATAATTAAAACCATAGGGTC-AATATGCTCCCATCTATCC  949

seq1  AGGAAGTCGTTGGGTAAACTTCAACTAATAGTTTAAAGGAGCCCAGGGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTCGTTGGGTAAACTTCAACTAATAGTTTAAAGGAGCCCAGGGCT  999

seq1  CACGGAAGTTGGCATACAGCAGTGTCCTGACTGCAGTAGCAATGGCATGG  1050
      |||||||||| |||||||||| ||| ||||||||||||||||| |||| |
seq2  CACGGAAGTT-GCATACAGCA-TGT-CTGACTGCAGTAGCAAT-GCAT-G  1044

seq1  TGTGTTCCTGGTGGTCTAGCTGCACACATGCAAGTTCACTTGCATGTTCT  1100
      |||| |||| ||| ||||||||||  ||||||   |||| ||||||||||
seq2  TGTG-TCCT-GTGTTCTAGCTGCAACCATGCA--GTCAC-TGCATGTTCT  1089

seq1  CTATGC-ATGCTGTCTCGCACATACAATGCTTAC  1133
      || ||| ||||||||||| |||||| ||||||||
seq2  CT-TGCAATGCTGTCTCGGACATAC-ATGCTTAC  1121

seq1: chr11_118734553_118735535
seq2: B6Ng01-126O06.g_69_1047 (reverse)

seq1  CACTGCCAG-ATCAATGGGTTGTAGATGTTGACCTGGCTTGGGCCT-AGC  48
      | ||||||| |||||||| |||||||   ||||||||||  ||||| |||
seq2  CCCTGCCAGAATCAATGGATTGTAGAATGTGACCTGGCT--GGCCTAAGC  48

seq1  ACTGCACACTGCCTGAAAATGTCTCACCCCAGCTATTCATCATCTCAACA  98
      ||||||||||| |||||||| |||||||||||||| ||||||||||||||
seq2  ACTGCACACTG-CTGAAAATTTCTCACCCCAGCTA-TCATCATCTCAACA  96

seq1  GCCCCAGTAATGGGATCAACCCACTTCACAGATGCAGAACTGAGGCTCAG  148
      ||||||||||| |||||||||  |||||||||||||||||||||||||||
seq2  GCCCCAGTAAT-GGATCAACCACCTTCACAGATGCAGAACTGAGGCTCAG  145

seq1  AGGGATGAAATGCTTTCCAAGTCCATCTGACTCTGGACAGACAGATCTTC  198
      ||||||||||||||||||||||||||||||||||| | ||||||||||| 
seq2  AGGGATGAAATGCTTTCCAAGTCCATCTGACTCTGAAAAGACAGATCTT-  194

seq1  CCCTAGACAGGGACAAATGGTACATCACTATCCCCCAAAACAAACTCTGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGACAGGGACAAATGGTACATCACTATCCCCCAAAACAAACTCTGT  244

seq1  CCCCAAAGAAAGACTTGAGCAATACCTTAAGCTGTGACAATAACTTTAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGAAAGACTTGAGCAATACCTTAAGCTGTGACAATAACTTTAAG  294

seq1  AGAGTAGTCCCCAAATGCTTTAGGAGGCCAGAGTCCCAGTCAAGATTTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGTCCCCAAATGCTTTAGGAGGCCAGAGTCCCAGTCAAGATTTCC  344

seq1  CTAAGACAACTAAGTCTTCTTAAGCCTTTTCACTATTTAAAAAAAAATAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACAACTAAGTCTTCTTAAGCCTTTTCACTATTTAAAAAAAAATAA  394

seq1  TTTCCCTGTGCCTCACTGGGGCTTGGTCACATTTCCCGAAGACCTCAAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGTGCCTCACTGGGGCTTGGTCACATTTCCCGAAGACCTCAAAG  444

seq1  TGGCCTCGGGGCTGCAGAGCCTGGTAGGGGACTCTAGGAAGAGATCGAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCGGGGCTGCAGAGCCTGGTAGGGGACTCTAGGAAGAGATCGAGG  494

seq1  CCTGTGGTGTACAAGGCACTGGTTGGGCGGCCTTGCCCTGTGGCCCCACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGTGTACAAGGCACTGGTTGGGCGGCCTTGCCCTGTGGCCCCACA  544

seq1  CATGTATCAGGCCCCTGTCTGTATCAGACGCTTCCAGAGGACAGAGGTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATCAGGCCCCTGTCTGTATCAGACGCTTCCAGAGGACAGAGGTAA  594

seq1  GCAGAGAATACCACTCTAGATTCAGTGACAGGCAGACCGAGAGAGTCCCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAATACCACTCTAGATTCAGTGACAGGCAGACCGAGAGAGTCCCC  644

seq1  AACGTCAGGAGTAAGAGACCAACCTTAGACCCCAACCTAAAAAGGCACTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTCAGGAGTAAGAGACCAACCTTAGACCCCAACCTAAAAAGGCACTA  694

seq1  CACATTCATCTGTTCTACCTTAACAATGTCACCATTGAGGCTGAAGGCCG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCATCTGTTCTACCTTAACAATGTCACCATTGAGGCTGAAGGCCG  744

seq1  GTTGCGTCTCTGACAAGTGTTCTATGGTACAGAGTCCCAGAAGCAAACAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCGTCTCTGACAAGTGTTCTATGGTACAGAGTCCCAGAAGCAAACAC  794

seq1  CTCAGCTGCACAGGCATCCTCACAGCCTGCGGGCTCGTCCCTGCTCCTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTGCACAGGCATCCTCACAGCCTGCGGGCTCGTCCCTGCTCCTCC  844

seq1  CAGGAAAAGGAGACTCATTCCTATCAGGCCCAGTGTCCTGGCCACACCCG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAGGAGACTCATTCCTATCAGGCCCAGTGTCCTGGCCACACCCG  894

seq1  TGCGAGGCAAGGCAGGAGGTCTCTGGTCCTGTAGGGAGGAGTCCAGTTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGGCAAGGCAGGAGGTCTCTGGTCCTGTAGGGAGGAGTCCAGTTCC  944

seq1  ATGAGTCCTGGCTAGACACGCAACGGAGTGAATTC  983
      |||||||||||||||||||||||||||||||||||
seq2  ATGAGTCCTGGCTAGACACGCAACGGAGTGAATTC  979