BAC Information

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BAC

Clone NameB6Ng01-126P24
Chromosome11 (Build37)
Map Location 97,751,221 - 97,910,143
singlet/doubletdoublet
Overlap genePlxdc1, Arl5c, Cacnb1, Rpl19, Stac2
Upstream geneCdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47
Downstream geneFbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126P24.bB6Ng01-126P24.g
ACCDH929230DH929231
length511890
definitionDH929230|Mus musculus domesticus DNA, BAC clone: B6Ng01-126P24, 5' end.DH929231|Mus musculus domesticus DNA, BAC clone: B6Ng01-126P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,909,627 - 97,910,143)(97,751,221 - 97,752,023)
sequence
cttgattgacccaatagacaaatccatggaacagcaaaggaaaggaaggc
agaagacccaggcagggctcaaggcgacagtatacgcctggttattggat
ctgagcagcctgagccaacatccaattcttgactctgctgtttgccagcg
gaggactcagagcgggcgggggggggtgttaagttcttcaagctccaccc
ctcttctgaaccctgggtcaatcatggtctcccccagtgggcagcactgc
attcagtgtgagactgtatgtcaggttctagcccagatccagccttctaa
tgctgagaaccctttacggggccaaatttatgcttgatggatctgtttgg
acccagagctttgcattacccaaggagtacccagtgttgtctcctcctcc
ttggatgcagggaaactaaggcccagagagaggaagtgatgggattcaca
ctcagataacaggttggttttgcccagtccccagcacgactctctatgcg
ctctgtgtctg
gaattccagatcttcctcctggctgccttcagatcaagatatagaactct
ttcctcctccagcgctgtgtcttcctgcatgctaccatgcttcccaccac
gaccataatggactgaacctctctctgaaactgtaacctagccccaagta
atgcttgcctttataatagttaccttgatcatattgtcttttacagcaat
aaaaccctgattaagacagatagcaacaaaataacgttatggttgggggt
cagcaaaacatgaggacttttattagagggtcacagctaaggaaggctga
gaacttctcccttagttagtaaagtgcttaccttgcaaacacaaggccct
cagatccagagaatccacgtaagaaagctggcatgtggcgtgggcatgta
gtgtcatcactggggaggcagggaaaggcagatctctggagctcgattgc
tggttatcaaaagttccaggccagtgagagaccctctccaacccacccca
gccctcctcaaaaggtgggttatgtcataagaagaatgctaaggttgtcc
ctagtctccacgggcacagtgtggcacacagacacacaagcaggcagaac
acctgtatacccaaagcaagttaacatttttgtttcaaatgttttctgtt
taaataatagtaagagggcagtgtgataaatactgcatgttccttttaat
tatttcttttatctttttctttctgttttgtttttgagatagggtttttt
cttcatagccctggtagaactggatcttgtagatcaggctgggcttcaac
ctcagagatctgactggctcttgcctccaagtgcaggattaaagtgtatg
cctaccattgactggcctctctccgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_97909627_97910143
seq2: B6Ng01-126P24.b_49_565 (reverse)

seq1  CAGACACAGAGCGCATAGAGAGTCGTGCTGGGGACAGGGCAAAACCAACC  50
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAGACACAGAGCGCATAGAGAGTCGTGCTGGGGACTGGGCAAAACCAACC  50

seq1  TGTTATCTGAGTGTGAATCCCATCACTTCCTCTCTCTGGGCCTTAGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTGAGTGTGAATCCCATCACTTCCTCTCTCTGGGCCTTAGTTTC  100

seq1  CCTGCATCCAAGGAGGAGGAGACAACACTGGGTACTCCTTGGGTAATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATCCAAGGAGGAGGAGACAACACTGGGTACTCCTTGGGTAATGCA  150

seq1  AAGCTCTGGGTCCAAACAGATCCATCAAGCATAAATTTGGCCCCGTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGGGTCCAAACAGATCCATCAAGCATAAATTTGGCCCCGTAAAG  200

seq1  GGTTCTCAGCATTAGAAGGCTGGATCTGGGCTAGAACCTGACATACAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCAGCATTAGAAGGCTGGATCTGGGCTAGAACCTGACATACAGTC  250

seq1  TCACACTGAATGCAGTGCTGCCCACTGGGGGAGACCATGATTGACCCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTGAATGCAGTGCTGCCCACTGGGGGAGACCATGATTGACCCAGG  300

seq1  GTTCAGAAGAGGGGTGGAGCTTGAAGAACTTAACACCCCCCCCCGCCCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAAGAGGGGTGGAGCTTGAAGAACTTAACACCCCCCCCCGCCCGC  350

seq1  TCTGAGTCCTCCGCTGGCAAACAGCAGAGTCAAGAATTGGATGTTGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTCCTCCGCTGGCAAACAGCAGAGTCAAGAATTGGATGTTGGCTC  400

seq1  AGGCTGCTCAGATCCAATAACCAGGCGTATACTGTCGCCTTGAGCCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTCAGATCCAATAACCAGGCGTATACTGTCGCCTTGAGCCCTGC  450

seq1  CTGGGTCTTCTGCCTTCCTTTCCTTTGCTGTTCCATGGATTTGTCTATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCTTCTGCCTTCCTTTCCTTTGCTGTTCCATGGATTTGTCTATTG  500

seq1  GGTCAATCAAGGAATTC  517
      |||||||||||||||||
seq2  GGTCAATCAAGGAATTC  517

seq1: chr11_97751221_97752023
seq2: B6Ng01-126P24.g_156_957

seq1  GCTTCCCACCACGACCATAATGGACTGAACCTCTCTCTGAAACTGTAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCACCACGACCATAATGGACTGAACCTCTCTCTGAAACTGTAACC  50

seq1  TAGCCCCAAGTAATGCTTGCCTTTATAATAGTTACCTTGATCATATTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCAAGTAATGCTTGCCTTTATAATAGTTACCTTGATCATATTGTC  100

seq1  TTTTACAGCAATAAAACCCTGATTAAGACAGATAGCAACAAAATAACGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAGCAATAAAACCCTGATTAAGACAGATAGCAACAAAATAACGTT  150

seq1  ATGGTTGGGGGTCAGCAAAACATGAGGACTTTTATTAGAGGGTCACAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGGGGGTCAGCAAAACATGAGGACTTTTATTAGAGGGTCACAGCT  200

seq1  AAGGAAGGCTGAGAACTTCTCCCTTAGTTAGTAAAGTGCTTACCTTGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGCTGAGAACTTCTCCCTTAGTTAGTAAAGTGCTTACCTTGCAA  250

seq1  ACACAAGGCCCTCAGATCCAGAGAATCCACGTAAGAAAGCTGGCATGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGGCCCTCAGATCCAGAGAATCCACGTAAGAAAGCTGGCATGTGG  300

seq1  CGTGGGCATGTAGTGTCATCACTGGGGAGGCAGGGAAAGGCAGATCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGCATGTAGTGTCATCACTGGGGAGGCAGGGAAAGGCAGATCTCTG  350

seq1  GAGCTCGATTGCTGGTTATCAAAAGTTCCAGGCCAGTGAGAGACCCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCGATTGCTGGTTATCAAAAGTTCCAGGCCAGTGAGAGACCCTCTC  400

seq1  CAACCCACCCCAGCCCTCCTCAAAAGGTGGGTTATGTCATAAGAAGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCACCCCAGCCCTCCTCAAAAGGTGGGTTATGTCATAAGAAGAATG  450

seq1  CTAAGGTTGTCCCTAGTCTCCACGGGCACAGTGTGGCACACAGACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTTGTCCCTAGTCTCCACGGGCACAGTGTGGCACACAGACACACA  500

seq1  AGCAGGCAGAACACCTGTATACCCAAAGCAAGTTAACATTTTTGTTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCAGAACACCTGTATACCCAAAGCAAGTTAACATTTTTGTTTCAA  550

seq1  ATGTTTTCTGTTTAAATAATAGTAAGAGGGCAGTGTGATAAATACTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCTGTTTAAATAATAGTAAGAGGGCAGTGTGATAAATACTGCAT  600

seq1  GTTCCTTTTAATTATTTCTTTTATCTTTTTCTTTTCTGTTTTTGTTTTTT  650
      ||||||||||||||||||||||||||||||| ||||||||||   |||||
seq2  GTTCCTTTTAATTATTTCTTTTATCTTTTTC-TTTCTGTTTT--GTTTTT  647

seq1  GAGATAGGG-TTTTTCTTCATAGCCCTGGTAGAACTGGATC-TGTAGATC  698
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  GAGATAGGGTTTTTTCTTCATAGCCCTGGTAGAACTGGATCTTGTAGATC  697

seq1  AGGCT-GGCCTCAAACTCAAGAGATCTGACTGCCTC-TGCCTCCAAGTGC  746
      ||||| ||| |||| ||| ||||||||||||| ||| |||||||||||||
seq2  AGGCTGGGCTTCAACCTC-AGAGATCTGACTGGCTCTTGCCTCCAAGTGC  746

seq1  AGGGATTAAAAGTGTATGCC-ACCATTGACTGGCTTCTTTCCGTGTGTGT  795
      | ||||| |||||||||||| ||||||||||||| ||| |||||||||||
seq2  A-GGATT-AAAGTGTATGCCTACCATTGACTGGCCTCTCTCCGTGTGTGT  794

seq1  GTGTGTGT  803
      ||||||||
seq2  GTGTGTGT  802