BAC Information

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BAC

Clone NameB6Ng01-127K01
Chromosome11 (Build37)
Map Location 6,928,063 - 7,112,297
singlet/doubletdoublet
Overlap geneAdcy1, LOC100041347, Igfbp1, Igfbp3
Upstream geneCamk2b, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127K01.bB6Ng01-127K01.g
ACCDH929694DH929695
length1,139935
definitionDH929694|Mus musculus domesticus DNA, BAC clone: B6Ng01-127K01, 5' end.DH929695|Mus musculus domesticus DNA, BAC clone: B6Ng01-127K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,111,118 - 7,112,297)(6,928,063 - 6,928,998)
sequence
gaattctccggtttcccacaccaggctggcagatggtgcagatcgagccc
ccaggaccagggctagctgggtagagagtctctttatgatttctgtggct
gctgacctacactcccgggtacaggcaagtcctggtatgttcatccccga
gaagcattggattcctggcaaagcaagattccagttgtttcgctgactca
gacaaaggcaaaatcatgccatttgcctgtgtgtctttaacttctagtgc
gttctgtggtataccaaaagcaatcttaagaaatactagcattgctattt
tgagttaagccttaatgacctctattaataatcaccattgaacactgtag
taaaaattgatgtgagctttaattacaaaagagtttggaggcttcaatat
ccattgaaggaaaaaatatagttctgtgacacaattcacaattccctatt
taatagttctattgtagtcagctatctaaggagaacaaagagaaggaaaa
aagggacgtttaagaaattactcagcttcttggaagataaatacaaatac
aatcatttacatattagcatttcctttgtccctgtactttcaaaaaaaaa
aaaacccacaaagattcaagcaaattgaaaccaagtctacaaattgaatc
atggctctcctccgccaggtgctagtctagacccgaggaattttgcttgc
gggggcaagaggtcattgagggtttgcagccgagtctcagggagccgttt
ggtagatgagaaactcaggctccttgggcaagagggccttctgggatcct
gcacgccagttcctctgagagatgggagaagctgcgacctccgacggttt
ctagcaaacgaagcattagctcttggccagaggctcagagcttcctcgtg
ggcaggatgcctcagcctggcatttcctgagagccaaatcaaaaagagag
gcagctggggccctgactttgcacccagacgataaattcagacagatgca
ctggactcatgctcagaaagctataagccatgtcagaggaggattctatg
gtcatgatctgagctaaacttaagctgtagctcgagttgaagttggggca
tacttgctgggtccctgggccgggggaatcttactgcaa
gaattcttcatgaggtggttaggaaagaggatcaggaggatcatgggaga
accaccttccattaatctgtacccaggctagttccagcctgagtcagaaa
ccggctggtccaagatggcattgggaaaggacactgaactaaaggaacat
agtgcaggtagtacaaatgagtcggggaatagaaagttgttcaacatggc
ctcctttgtggctgcaaatggttttgcagtgttccatccttcagggtaca
gccaacagggctcccgatgcccccttgactgcctagctggaaatcttgtc
tgaaacagaaagcaggatagtaaggatcattttttctcaagtccaagagg
gatttgcctagagacagaatgtcagaattcccattgtagtctgcatccag
gaatgtgaggaggtcctgagctgtgtgacacacaagaatgagagagccat
tttttccatttaagaaaaattcaattgatgagagtgtggcacactagaag
ggacagtctgtggcaggatgaagagctggccctggcctgggcagggatga
ccagaaggtcctataggtaggtatttagttaagtgtagagtgggtttcag
aaaagcagagcagttagactggcccagtatatttttcttatgtgactgtg
taggtagaggaacaacttattcaaccagaaggggatgatcttaaggagaa
ggggacattggtgctgtaacttgttaccacagatgcagtgattgtttttt
gtgcattccagctatgaagacctatgaagtgaacgcaggaatgcacagtc
tggaaagtcagggcttgaaccctgtatgcagctctgtagcacaaggggga
gtagtgaatacgtcaccttcttgaactggctacattacttggtcattgga
gtgtcctcatttggctggcaggaaccatgaagcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_7111118_7112297
seq2: B6Ng01-127K01.b_44_1182 (reverse)

seq1  TTGCAGTAAGATATCCCCCCCGCCCCAGGGGGGACCCAAGGCCAGATAAT  50
      ||||||||||||    |||||| ||||   ||||||||  || || ||  
seq2  TTGCAGTAAGAT---TCCCCCGGCCCA---GGGACCCA--GCAAG-TA--  39

seq1  TGGCCCCCAACTCTCAACTCTGAGCTTTACAGCTTTAGGTTTAAGCTTCA  100
      ||  |||||||| ||||||| ||||  |||||||| ||  || ||| |||
seq2  TG--CCCCAACT-TCAACTC-GAGC--TACAGCTTAAG--TTTAGC-TCA  80

seq1  GATCATGACCATAGAATTCCTTCCCTCCTGACAAAGGGGCTTTAATAGCT  150
      |||||||||||||||| ||||  ||| ||||||    |||||  ||||||
seq2  GATCATGACCATAGAA-TCCT--CCT-CTGACA---TGGCTT--ATAGCT  121

seq1  TTCTGAGCATGGAGTCCCAGTTGGCATCTGGTTCTGAATTTATTCTGTCT  200
      |||||||||| |||| |||||  |||||||  |||||||||||   ||||
seq2  TTCTGAGCAT-GAGT-CCAGT--GCATCTG--TCTGAATTTAT--CGTCT  163

seq1  GGGTGCAAAGTTCAGGGCCCCAGCTGGCCTCTCTTTTTTGATTTGGCCTC  250
      |||||||||| |||||||||||||| ||||||| |||||||||||| |||
seq2  GGGTGCAAAG-TCAGGGCCCCAGCT-GCCTCTC-TTTTTGATTTGG-CTC  209

seq1  TCAGGAAATGCCAGGCTGAGGCATCCTGCCCACGAGGAAGCTCTGGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCAGGAAATGCCAGGCTGAGGCATCCTGCCCACGAGGAAGCTCTGAGCCT  259

seq1  CTGGCCAAGAGCTAATGCTTCGTTTGCTAGAAACCGTCGGAGGTCGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAAGAGCTAATGCTTCGTTTGCTAGAAACCGTCGGAGGTCGCAGC  309

seq1  TTCTCCCATCTCTCAGAGGAACTGGCGTGCAGGATCCCAGAAGGCCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCATCTCTCAGAGGAACTGGCGTGCAGGATCCCAGAAGGCCCTCT  359

seq1  TGCCCAAGGAGCCTGAGTTTCTCATCTACCAAACGGCTCCCTGAGACTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAGGAGCCTGAGTTTCTCATCTACCAAACGGCTCCCTGAGACTCG  409

seq1  GCTGCAAACCCTCAATGACCTCTTGCCCCCGCAAGCAAAATTCCTCGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAAACCCTCAATGACCTCTTGCCCCCGCAAGCAAAATTCCTCGGGT  459

seq1  CTAGACTAGCACCTGGCGGAGGAGAGCCATGATTCAATTTGTAGACTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTAGCACCTGGCGGAGGAGAGCCATGATTCAATTTGTAGACTTGG  509

seq1  TTTCAATTTGCTTGAATCTTTGTGGGTTTTTTTTTTTTTGAAAGTACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTTGCTTGAATCTTTGTGGGTTTTTTTTTTTTTGAAAGTACAGG  559

seq1  GACAAAGGAAATGCTAATATGTAAATGATTGTATTTGTATTTATCTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGGAAATGCTAATATGTAAATGATTGTATTTGTATTTATCTTCCA  609

seq1  AGAAGCTGAGTAATTTCTTAAACGTCCCTTTTTTCCTTCTCTTTGTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTGAGTAATTTCTTAAACGTCCCTTTTTTCCTTCTCTTTGTTCTC  659

seq1  CTTAGATAGCTGACTACAATAGAACTATTAAATAGGGAATTGTGAATTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATAGCTGACTACAATAGAACTATTAAATAGGGAATTGTGAATTGT  709

seq1  GTCACAGAACTATATTTTTTCCTTCAATGGATATTGAAGCCTCCAAACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGAACTATATTTTTTCCTTCAATGGATATTGAAGCCTCCAAACTC  759

seq1  TTTTGTAATTAAAGCTCACATCAATTTTTACTACAGTGTTCAATGGTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAATTAAAGCTCACATCAATTTTTACTACAGTGTTCAATGGTGAT  809

seq1  TATTAATAGAGGTCATTAAGGCTTAACTCAAAATAGCAATGCTAGTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATAGAGGTCATTAAGGCTTAACTCAAAATAGCAATGCTAGTATTT  859

seq1  CTTAAGATTGCTTTTGGTATACCACAGAACGCACTAGAAGTTAAAGACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGATTGCTTTTGGTATACCACAGAACGCACTAGAAGTTAAAGACAC  909

seq1  ACAGGCAAATGGCATGATTTTGCCTTTGTCTGAGTCAGCGAAACAACTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAAATGGCATGATTTTGCCTTTGTCTGAGTCAGCGAAACAACTGG  959

seq1  AATCTTGCTTTGCCAGGAATCCAATGCTTCTCGGGGATGAACATACCAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGCTTTGCCAGGAATCCAATGCTTCTCGGGGATGAACATACCAGG  1009

seq1  ACTTGCCTGTACCCGGGAGTGTAGGTCAGCAGCCACAGAAATCATAAAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTGTACCCGGGAGTGTAGGTCAGCAGCCACAGAAATCATAAAGA  1059

seq1  GACTCTCTACCCAGCTAGCCCTGGTCCTGGGGGCTCGATCTGCACCATCT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCTACCCAGCTAGCCCTGGTCCTGGGGGCTCGATCTGCACCATCT  1109

seq1  GCCAGCCTGGTGTGGGAAACCGGAGAATTC  1180
      ||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGTGTGGGAAACCGGAGAATTC  1139

seq1: chr11_6928063_6928998
seq2: B6Ng01-127K01.g_69_1003

seq1  GAATTCTTCATGAGGTGGTTAGGAAAGAGGATCAGGAGGATCATGGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATGAGGTGGTTAGGAAAGAGGATCAGGAGGATCATGGGAGA  50

seq1  ACCACCTTCCATTAATCTGTACCCAGGCTAGTTCCAGCCTGAGTCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTTCCATTAATCTGTACCCAGGCTAGTTCCAGCCTGAGTCAGAAA  100

seq1  CCGGCTGGTCCAAGATGGCATTGGGAAAGGACACTGAACTAAAGGAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTGGTCCAAGATGGCATTGGGAAAGGACACTGAACTAAAGGAACAT  150

seq1  AGTGCAGGTAGTACAAATGAGTCGGGGAATAGAAAGTTGTTCAACATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGGTAGTACAAATGAGTCGGGGAATAGAAAGTTGTTCAACATGGC  200

seq1  CTCCTTTGTGGCTGCAAATGGTTTTGCAGTGTTCCATCCTTCAGGGTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTGTGGCTGCAAATGGTTTTGCAGTGTTCCATCCTTCAGGGTACA  250

seq1  GCCAACAGGGCTCCCGATGCCCCCTTGACTGCCTAGCTGGAAATCTTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAGGGCTCCCGATGCCCCCTTGACTGCCTAGCTGGAAATCTTGTC  300

seq1  TGAAACAGAAAGCAGGATAGTAAGGATCATTTTTTCTCAAGTCCAAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAGAAAGCAGGATAGTAAGGATCATTTTTTCTCAAGTCCAAGAGG  350

seq1  GATTTGCCTAGAGACAGAATGTCAGAATTCCCATTGTAGTCTGCATCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCCTAGAGACAGAATGTCAGAATTCCCATTGTAGTCTGCATCCAG  400

seq1  GAATGTGAGGAGGTCCTGAGCTGTGTGACACACAAGAATGAGAGAGCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGAGGAGGTCCTGAGCTGTGTGACACACAAGAATGAGAGAGCCAT  450

seq1  TTTTTCCATTTAAGAAAAATTCAATTGATGAGAGTGTGGCACACTAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCATTTAAGAAAAATTCAATTGATGAGAGTGTGGCACACTAGAAG  500

seq1  GGACAGTCTGTGGCAGGATGAAGAGCTGGCCCTGGCCTGGGCAGGGATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTCTGTGGCAGGATGAAGAGCTGGCCCTGGCCTGGGCAGGGATGA  550

seq1  CCAGAAGGTCCTATAGGTAGGTATTTAGTTAAGTGTAGAGTGGGTTTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGGTCCTATAGGTAGGTATTTAGTTAAGTGTAGAGTGGGTTTCAG  600

seq1  AAAAGCAGAGCAGTTAGACTGGCCCAGTATA-TTTTCTTATGTGACTGTG  649
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAAAGCAGAGCAGTTAGACTGGCCCAGTATATTTTTCTTATGTGACTGTG  650

seq1  TAGGTAGAGGAACAACTTATTCAACCAGAAGGGGATGATCTTAAGGAGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGAGGAACAACTTATTCAACCAGAAGGGGATGATCTTAAGGAGAA  700

seq1  GGGGACATTGGTGCTGTAACTTGTTACCACAGATGCAGTGATTG-TTTTT  748
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGGGACATTGGTGCTGTAACTTGTTACCACAGATGCAGTGATTGTTTTTT  750

seq1  GTGCA-TCCAGCTATGAAGACCTATGAAGTGAACGCAGGAATGCACAGTC  797
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTCCAGCTATGAAGACCTATGAAGTGAACGCAGGAATGCACAGTC  800

seq1  TGGAAAGTCAGGGCTTGGACCCTGTATGCAAGCTCTGTAGCACAAGGGGG  847
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  TGGAAAGTCAGGGCTTGAACCCTGTATGC-AGCTCTGTAGCACAAGGGGG  849

seq1  AGTAGTGAATACAGTCACCTTCTTGAAATGGCTACATTACCTGGTCATTG  897
      |||||||||||| |||||||||||||| |||||||||||| |||||||||
seq2  AGTAGTGAATAC-GTCACCTTCTTGAACTGGCTACATTACTTGGTCATTG  898

seq1  GAAGTGTCCTCCATATGGCTGGCAGGAACCATGAGGCAG  936
      | |||||||| ||| ||||||||||||||||||| ||||
seq2  G-AGTGTCCT-CATTTGGCTGGCAGGAACCATGAAGCAG  935