BAC Information

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BAC

Clone NameB6Ng01-129N13
Chromosome11 (Build37)
Map Location 101,540,362 - 101,675,279
singlet/doubletdoublet
Overlap geneDhx8, Etv4
Upstream geneD11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842
Downstream geneMeox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129N13.bB6Ng01-129N13.g
ACCDH931324DH931325
length1,116992
definitionDH931324|Mus musculus domesticus DNA, BAC clone: B6Ng01-129N13, 5' end.DH931325|Mus musculus domesticus DNA, BAC clone: B6Ng01-129N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,540,362 - 101,541,485)(101,674,276 - 101,675,279)
sequence
gaattctgccctggctcatggttcacacttgtgactccaacatccaggct
acagaaaccagaggatggctgtacattcagggccaggttgggctacgtag
tgagactatgtcttagagacagtcttttaagggaaagaaaggagaaaaac
tgcaaggtgacccaagcctgtaaccccagcaaggggaacatacgtatagg
agcaccgggagtttggccagacttggctacatagtgaagttggggttagc
ctgggctatgggacatcctgatcaaagaaaaacaggcaaacaaataaata
catagaaacaaaataagctggatgtggggaagcaatcctgtaatcatagc
actagggaggtagaagcaggaagaataggagttcaaggtcctttgctata
cactaagtttgaggccattattggtgtacatgagacccagctcagtcaca
tctgtctgtcggctcacgcacactgcccagaggaaggctcgtctcttaca
cctgtgccatcagatgacaagctactatttgctctgagcattctctaggc
cacgggcaagtggccagagaatacccctggccagtataggggctctaggt
ggagcctcaaaggctggagtgggcaaggcccagtctggatcactgctcct
atgttgcagttcgcgcctctcaggactctcactggccctcgtctgagctc
atccgacatcattccatccttgttcccaagccctggtcactgcctaggat
ccagcctggttgcacttggaagtctggataaagccctgagcttcttggag
agccaccagggagttggaattctggactttcccttgctcatctcccttgc
ttctcagtgtgtccttccttcgtggccacagcaggaagttttggggtccc
agggaagaccagacactcactcctcttgactttttttttttttttaaact
ggttacatccagcttcgcttccttgtcagaaaatggatgggccaggggca
attcacacttctccttcgacctgaccaccccaggctcaaatctactcaga
catcacaggacccatcccttgaacgaaggtgggcctggcctggtttcctt
gagactttgatcgaaa
gaattccagtctaaatagtgaaagcccgtcccataaaaagcaggaaaaga
aagggctgggggcatagctcagttggcagagtgcttactagcctgaagga
agccctggctttgtaccccagcactgcgaaagcatagcagtgctttcctg
taattctcaaatttggaggtggaggccggaggatgcatgagacacagggg
ggagagagagactgagagacagagagacagagagacagagagacagagag
acagagagacagagctgatatggaaaccgttccttgagtgcctgaggtta
gggatgttaaggtagagagctctgctatcaacacgctgtgatcttgggca
gagatcttccccatctctggctgcccatcttctgaggtgaagacacgtgg
gattagatggtctattaaggtatctccattctaaataaaagttgaaactg
gaataaaactcttcctattccggcctggcagctgctagagaagcagtgtg
cttgccaacactgccacctggtggcggcaacactccactacaggggagac
ttctgggtcgagtgggcgttcacttctcctccaccagctaagtgactcta
ggtttttattgttgttaattacattattaaatttttatcttatcttaatt
atatatgtttgcgtgtgggtatgtgcacatacatgcaggtgcctgtagag
gctagagcatcagatgccctggagctggagacgggtagctatgagcctcc
agtgggaaggagagagacggcctaggaattctattcaaatcctgtagcag
agtctaaaaactgctctgcaagagtagtatacacccctcactgagccatc
tctgcaccctgtttttgtttcttttggattttgtttaaccgcttctctga
ctggggttgtgctcagtggagaatgggaacttcgtatgtttgaggctctg
acgctggattccacagcatccctccgaagaaagtgtaacagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101540362_101541485
seq2: B6Ng01-129N13.b_49_1164

seq1  GAATTCTGCCCTGGCTCATGGTTCACACTTGTGACTCCAACATCCAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCTGGCTCATGGTTCACACTTGTGACTCCAACATCCAGGCT  50

seq1  ACAGAAACCAGAGGATGGCTGTACATTCAGGGCCAGGTTGGGCTACGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAACCAGAGGATGGCTGTACATTCAGGGCCAGGTTGGGCTACGTAG  100

seq1  TGAGACTATGTCTTAGAGACAGTCTTTTAAGGGAAAGAAAGGAGAAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTATGTCTTAGAGACAGTCTTTTAAGGGAAAGAAAGGAGAAAAAC  150

seq1  TGCAAGGTGACCCAAGCCTGTAACCCCAGCAAGGGGAACATACGTATAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGTGACCCAAGCCTGTAACCCCAGCAAGGGGAACATACGTATAGG  200

seq1  AGCACCGGGAGTTTGGCCAGACTTGGCTACATAGTGAAGTTGGGGTTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCGGGAGTTTGGCCAGACTTGGCTACATAGTGAAGTTGGGGTTAGC  250

seq1  CTGGGCTATGGGACATCCTGATCAAAGAAAAACAGGCAAACAAATAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTATGGGACATCCTGATCAAAGAAAAACAGGCAAACAAATAAATA  300

seq1  CATAGAAACAAAATAAGCTGGATGTGGGGAAGCAATCCTGTAATCATAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAACAAAATAAGCTGGATGTGGGGAAGCAATCCTGTAATCATAGC  350

seq1  ACTAGGGAGGTAGAAGCAGGAAGAATAGGAGTTCAAGGTCCTTTGCTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGAGGTAGAAGCAGGAAGAATAGGAGTTCAAGGTCCTTTGCTATA  400

seq1  CACTAAGTTTGAGGCCATTATTGGTGTACATGAGACCCAGCTCAGTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGTTTGAGGCCATTATTGGTGTACATGAGACCCAGCTCAGTCACA  450

seq1  TCTGTCTGTCGGCTCACGCACACTGCCCAGAGGAAGGCTCGTCTCTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTCGGCTCACGCACACTGCCCAGAGGAAGGCTCGTCTCTTACA  500

seq1  CCTGTGCCATCAGATGACAAGCTACTATTTGCTCTGAGCATTCTCTAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCCATCAGATGACAAGCTACTATTTGCTCTGAGCATTCTCTAGGC  550

seq1  CACGGGCAAGTGGCCAGAGAATACCCCTGGCCAGTATAGGGGCTCTAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGCAAGTGGCCAGAGAATACCCCTGGCCAGTATAGGGGCTCTAGGT  600

seq1  GGAGCCTCAAAGGCTGGAGTGGGCAAGGCCCAGTCTGGATCACTGCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTCAAAGGCTGGAGTGGGCAAGGCCCAGTCTGGATCACTGCTCCT  650

seq1  ATGTTGCAGTTCGCGCCTCTCAGGACTCTCACTGGCCCTCGTCTGAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCAGTTCGCGCCTCTCAGGACTCTCACTGGCCCTCGTCTGAGCTC  700

seq1  ATCCGACATCATTCCATCCTTGTTCCCAAGCCCTGGTCACTGCCTAGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGACATCATTCCATCCTTGTTCCCAAGCCCTGGTCACTGCCTAGGAT  750

seq1  CCAGCCTGGTTGCACTTGGAAGTCTGGATAAAGCCCTGAGCTTCTTGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGTTGCACTTGGAAGTCTGGATAAAGCCCTGAGCTTCTTGGAG  800

seq1  AGCCACCAGGGAGTTGGAATTCTGGACTTTCCCTTGCTCATCTCCCTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCAGGGAGTTGGAATTCTGGACTTTCCCTTGCTCATCTCCCTTGC  850

seq1  TTGCTCAGTGTGTCCTTCCTTCGTGGCCACAGCAGAAGGTTTTGGGGTCC  900
      || |||||||||||||||||||||||||||||||| | ||||||||||||
seq2  TT-CTCAGTGTGTCCTTCCTTCGTGGCCACAGCAGGAAGTTTTGGGGTCC  899

seq1  CAGGGAAGACCAGACACTCACTCCTCTTTGACTTTTTTTTTTTTTTTAAA  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGGGAAGACCAGACACTCACTCCTC-TTGACTTTTTTTTTTTTTTTAAA  948

seq1  CTGGTTACATCCAGCCTCGCTTCC-TGTCAGAGAATGGATGGCCCAGGGG  999
      ||||||||||||||| |||||||| ||||||| ||||||||| |||||||
seq2  CTGGTTACATCCAGCTTCGCTTCCTTGTCAGAAAATGGATGGGCCAGGGG  998

seq1  CAATTCACACTCCTCCTCCGACCTGACCACCCCAGGCTCAAATCCTACTC  1049
      ||||||||||| ||||| ||||||||||||||||||||||||| ||||||
seq2  CAATTCACACTTCTCCTTCGACCTGACCACCCCAGGCTCAAAT-CTACTC  1047

seq1  AGACATCACAGGACACAGTCCCTTGACCGGAAGGGTGGGCCTGGCCTGGT  1099
      |||||||||||||| || |||||||| ||  | |||||||||||||||||
seq2  AGACATCACAGGACCCA-TCCCTTGAACG--AAGGTGGGCCTGGCCTGGT  1094

seq1  TTCCTTTGAGACTTTAGATCAGAAA  1124
      |||| |||||||||| |||| ||||
seq2  TTCC-TTGAGACTTT-GATC-GAAA  1116

seq1: chr11_101674276_101675279
seq2: B6Ng01-129N13.g_68_1059 (reverse)

seq1  ACTGTTAACACTTTCTTTGGGAAGTGGTGGTGTTGAATCCAGGGTCCAGA  50
      |||||| |||||||||| ||  || | || ||| |||||||| || ||||
seq2  ACTGTT-ACACTTTCTTCGG--AGGGATGCTGTGGAATCCAGCGT-CAGA  46

seq1  GCCTCAAACATACCGAGGTCCCCACTCTTCCACTGAGCTACAACACCAGT  100
      |||||||||||| ||| || |||| || |||||||||| ||||| |||||
seq2  GCCTCAAACATA-CGAAGTTCCCATTC-TCCACTGAGC-ACAACCCCAGT  93

seq1  CAGAG-AGCGGTTTAAAACAAAA-CCAAAAGAAAGCAAAAACAGGGCTGC  148
      ||||| |||||||  |||||||| |||||||||| ||||||||||| |||
seq2  CAGAGAAGCGGTT--AAACAAAATCCAAAAGAAA-CAAAAACAGGG-TGC  139

seq1  AGAGATGGCTCAGTGATGGGTGTATACTACTCTTGCAGAGCAGTTTTTAG  198
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGAGATGGCTCAGTGAGGGGTGTATACTACTCTTGCAGAGCAGTTTTTAG  189

seq1  ACTCTGCCTACAGGATTTGGATAGAATTCCTAGGCCGTCTCTCTCCTTCC  248
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTCTG-CTACAGGATTTGAATAGAATTCCTAGGCCGTCTCTCTCCTTCC  238

seq1  CACTGGGAGGCTCATAGCTACCCGTCTCCAGCTCCAGGGCATCTGATGGC  298
      |||| |||||||||||||||||||||||||||||||||||||||||| ||
seq2  CACT-GGAGGCTCATAGCTACCCGTCTCCAGCTCCAGGGCATCTGAT-GC  286

seq1  TCTAGCCTCTACAGGCACCTGCATGTATGTGCACATACCCACACGCAAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCTCTACAGGCACCTGCATGTATGTGCACATACCCACACGCAAAC  336

seq1  ATATATAATTAAGATAAGATAAAAATTTAATAATGTAATTAACAACAATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAATTAAGATAAGATAAAAATTTAATAATGTAATTAACAACAATA  386

seq1  AAAACCTAGAGTCACTTAGCTGGTGGAGGAGAAGTGAACGCCCACTCGAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTAGAGTCACTTAGCTGGTGGAGGAGAAGTGAACGCCCACTCGAC  436

seq1  CCAGAAGTCTCCCCTGTAGTGGAGTGTTGCCGCCACCAGGTGGCAGTGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTCTCCCCTGTAGTGGAGTGTTGCCGCCACCAGGTGGCAGTGTT  486

seq1  GGCAAGCACACTGCTTCTCTAGCAGCTGCCAGGCCGGAATAGGAAGAGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCACACTGCTTCTCTAGCAGCTGCCAGGCCGGAATAGGAAGAGTT  536

seq1  TTATTCCAGTTTCAACTTTTATTTAGAATGGAGATACCTTAATAGACCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCAGTTTCAACTTTTATTTAGAATGGAGATACCTTAATAGACCAT  586

seq1  CTAATCCCACGTGTCTTCACCTCAGAAGATGGGCAGCCAGAGATGGGGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCCACGTGTCTTCACCTCAGAAGATGGGCAGCCAGAGATGGGGAA  636

seq1  GATCTCTGCCCAAGATCACAGCGTGTTGATAGCAGAGCTCTCTACCTTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGCCCAAGATCACAGCGTGTTGATAGCAGAGCTCTCTACCTTAA  686

seq1  CATCCCTAACCTCAGGCACTCAAGGAACGGTTTCCATATCAGCTCTGTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTAACCTCAGGCACTCAAGGAACGGTTTCCATATCAGCTCTGTCT  736

seq1  CTCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCAGTCTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCAGTCTCT  786

seq1  CTCTCCCCCCTGTGTCTCATGCATCCTCCGGCCTCCACCTCCAAATTTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCCCCTGTGTCTCATGCATCCTCCGGCCTCCACCTCCAAATTTGA  836

seq1  GAATTACAGGAAAGCACTGCTATGCTTTCGCAGTGCTGGGGTACAAAGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACAGGAAAGCACTGCTATGCTTTCGCAGTGCTGGGGTACAAAGCC  886

seq1  AGGGCTTCCTTCAGGCTAGTAAGCACTCTGCCAACTGAGCTATGCCCCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTCCTTCAGGCTAGTAAGCACTCTGCCAACTGAGCTATGCCCCCA  936

seq1  GCCCTTTCTTTTCCTGCTTTTTATGGGACGGGCTTTCACTATTTAGACTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTCTTTTCCTGCTTTTTATGGGACGGGCTTTCACTATTTAGACTG  986

seq1  GAATTC  1004
      ||||||
seq2  GAATTC  992