BAC Information

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BAC

Clone NameB6Ng01-129N18
Chromosome11 (Build37)
Map Location 105,862,448 - 105,986,055
singlet/doubletdoublet
Overlap geneEG217246, Kcnh6, Wdr68, Ccdc44, Map3k3
Upstream geneLOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace
Downstream geneLimd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129N18.bB6Ng01-129N18.g
ACCDH931334DH931335
length1,1441,147
definitionDH931334|Mus musculus domesticus DNA, BAC clone: B6Ng01-129N18, 5' end.DH931335|Mus musculus domesticus DNA, BAC clone: B6Ng01-129N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,984,895 - 105,986,055)(105,862,448 - 105,863,615)
sequence
gaattccctagagctgcagtgacaggcagtttagagccacttgtcatggg
cgccagaaactgaactttggtccctgaaagaatagtacctattctaaacc
actgagcatctctccagcctccagatttctaccttgataaaaatcccaca
gttcaagaaatgggctttctcctcaaatcctttgctggctagttctatgt
taacttgacacaagctaagtgtcatctgggaggaggaaacctcaactgag
aaaatgcctccatgaagacagggctgaaggcaagcctctaagagagacct
taactaagagagaccttgagaagtatccagaggaacactgtattttctgc
tatataatgcacaagcctgatttagaacgaacgccttcctcgggaggtct
agcagcatctacataatttctttgctgttcagttgtacatactctgtcaa
tgctgagtctccagggtaactcagctgactgtcagcgtcttccatgaagc
ccaggatttcttaggagtaagcaagaagcctgtgctcaaaactaaaatgc
agacctgacccctaacttgacaggtcccctgcgagtattcaaacgaatcc
ctaagatcactttctcagggatgtttaaaacaaatttaaccatgtcatcc
tattattatattctaagatcctcaaaagtccaggtcatttcatgtcccct
ctaccccaaataaaaatgtagagcactactttgcatagtgatagtcaacg
agcatttgatgactgtttagtagttgaatattttaaatgtgaacacatca
aatttacaaggatagtaaagaagaaagagacttactgacagacaggtgcc
tgcttctgggctcaggagcttggtagatggtatttatatcccctgcagac
tgggaaggcttgatccgaacctgcctggacactccagagtgggagaggaa
ctagtctataagagaggagcaaagtgtgagctacattttaagtaatcagg
tctatgaaggatcttcgtctttcttagacttctacactcctcaggcactt
ttaatgcgttagcttacaagttttcaggaagtctcaatctcctgccacat
cactatgctgtctgatagtccagctcaggatatagcactaagat
gaattcagaactgattgcaaaacagttgtcatcaagagatggctcatctg
ttcccctacttcaccagctatactcctgctctgagaagaccttgaattcc
aagcttggacaccattctccaggcagtggcagaggagaagcttccgaaaa
cggggaggagtgtcacctccatccgtccagggatgcaggccctggtgaga
tcacattaggtcttctggttccaaggccagctctcccaccactgagttgg
ggcatctacccagtggccggatctctgttctcttgactgctattgatttg
ggtctgtgtctttaattgttcaatgagttttgtttctgccttgcagagag
ttagtgatacttgacctagcatcccctgcatgcattttagactgttagtt
gtacttctggtcttttgagatagggtcttgtagcccaggctagcctcaaa
cttgagatcctcccacactacctccctgaagtgctgggattacagatatg
tgtcactttgcctggcttcttttatatatgtaatgaggttatctatggct
cctccatgccctttaaccatctgcaaccaccagatggagcagaaggtttg
gtcctctgggctttgtttctagagaggtccaataatatgagcatcatcac
caccattatcaccaccccctgtcagttcttccttcctttatacataggga
tatggatgtacgcatatggatgtatacacacacaaacaagtgggctcttc
attcaacctctgctgcttgtattgttcacttagcatttacttggaacagg
cctgatcagtctttcttgtgtccagcagagggcaatagactacgaaataa
acgaattcctaaactactaaaaagaagactaacagaagagactttgctga
atatgaagaggtttaggaagtccagcaggaaccaaagaaaatgtctgtcc
ccaaagagacccagagaaatgacgtgtgttttctcccccagaagctcatg
tctaactcccctttagctcttgcttggagtactttgacgtcagtcattct
tctacttcctgtctaacctaccagcgaacaaggaactctggtttacatac
cctgaacgtgactgtgtctatatcccacgccccttctgtcacacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_105984895_105986055
seq2: B6Ng01-129N18.b_48_1191 (reverse)

seq1  ATCTTAGTGCTTAATTATCACTGAAGCTGTGAACATACAGCAAGCATAGT  50
      |||||||||||    |||| ||| ||||| ||  || |||  ||||||||
seq2  ATCTTAGTGCT---ATATC-CTG-AGCTG-GACTAT-CAGACAGCATAGT  43

seq1  GATGTGGCAAGTGAGGATTGAGACTTCCTGAAAAACCTGGTAGCTAACGC  100
      |||||||||   |  ||||||||||||||| ||||| ||  |||||||||
seq2  GATGTGGCA---GGAGATTGAGACTTCCTG-AAAACTTGTAAGCTAACGC  89

seq1  ATTAAAAGGTGCCTGAGGAGTGTGAGAGTCCTAAGGAAAGACGAAGATCC  150
      ||||||| ||||||||||||||| |||   |||| |||||||||||||||
seq2  ATTAAAA-GTGCCTGAGGAGTGT-AGAAGTCTAA-GAAAGACGAAGATCC  136

seq1  TTCATAGACCTGATTACTTAAAATGTAGCTCACACTTTTGCCTCCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  TTCATAGACCTGATTACTTAAAATGTAGCTCACACTTT--GCTCCTCTCT  184

seq1  TATAGACTAGTTCCTCTCCCCACTCTGGAGTGTCCAGGCAGGTTCGGATC  250
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TATAGACTAGTTCCTCT-CCCACTCTGGAGTGTCCAGGCAGGTTCGGATC  233

seq1  AAGCCTTCCCAGTCTGCAGGGGATATAAATACCATCTACCAAGCTCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTCCCAGTCTGCAGGGGATATAAATACCATCTACCAAGCTCCTGA  283

seq1  GCCCAGAAGCAGGCACCTGTCTGTCAGTAAGTCTCTTTCTTCTTTACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAAGCAGGCACCTGTCTGTCAGTAAGTCTCTTTCTTCTTTACTAT  333

seq1  CCTTGTAAATTTGATGTGTTCACATTTAAAATATTCAACTACTAAACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTAAATTTGATGTGTTCACATTTAAAATATTCAACTACTAAACAGT  383

seq1  CATCAAATGCTCGTTGACTATCACTATGCAAAGTAGTGCTCTACATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAATGCTCGTTGACTATCACTATGCAAAGTAGTGCTCTACATTTTT  433

seq1  ATTTGGGGTAGAGGGGACATGAAATGACCTGGACTTTTGAGGATCTTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGGTAGAGGGGACATGAAATGACCTGGACTTTTGAGGATCTTAGA  483

seq1  ATATAATAATAGGATGACATGGTTAAATTTGTTTTAAACATCCCTGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATAATAGGATGACATGGTTAAATTTGTTTTAAACATCCCTGAGAA  533

seq1  AGTGATCTTAGGGATTCGTTTGAATACTCGCAGGGGACCTGTCAAGTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCTTAGGGATTCGTTTGAATACTCGCAGGGGACCTGTCAAGTTAG  583

seq1  GGGTCAGGTCTGCATTTTAGTTTTGAGCACAGGCTTCTTGCTTACTCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGGTCTGCATTTTAGTTTTGAGCACAGGCTTCTTGCTTACTCCTA  633

seq1  AGAAATCCTGGGCTTCATGGAAGACGCTGACAGTCAGCTGAGTTACCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCTGGGCTTCATGGAAGACGCTGACAGTCAGCTGAGTTACCCTG  683

seq1  GAGACTCAGCATTGACAGAGTATGTACAACTGAACAGCAAAGAAATTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCAGCATTGACAGAGTATGTACAACTGAACAGCAAAGAAATTATG  733

seq1  TAGATGCTGCTAGACCTCCCGAGGAAGGCGTTCGTTCTAAATCAGGCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCTGCTAGACCTCCCGAGGAAGGCGTTCGTTCTAAATCAGGCTTG  783

seq1  TGCATTATATAGCAGAAAATACAGTGTTCCTCTGGATACTTCTCAAGGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTATATAGCAGAAAATACAGTGTTCCTCTGGATACTTCTCAAGGTC  833

seq1  TCTCTTAGTTAAGGTCTCTCTTAGAGGCTTGCCTTCAGCCCTGTCTTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAGTTAAGGTCTCTCTTAGAGGCTTGCCTTCAGCCCTGTCTTCAT  883

seq1  GGAGGCATTTTCTCAGTTGAGGTTTCCTCCTCCCAGATGACACTTAGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCATTTTCTCAGTTGAGGTTTCCTCCTCCCAGATGACACTTAGCTT  933

seq1  GTGTCAAGTTAACATAGAACTAGCCAGCAAAGGATTTGAGGAGAAAGCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAAGTTAACATAGAACTAGCCAGCAAAGGATTTGAGGAGAAAGCCC  983

seq1  ATTTCTTGAACTGTGGGATTTTTATCAAGGTAGAAATCTGGAGGCTGGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTGAACTGTGGGATTTTTATCAAGGTAGAAATCTGGAGGCTGGAG  1033

seq1  AGATGCTCAGTGGTTTAGAATAGGTACTATTCTTTCAGGGACCAAAGTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTCAGTGGTTTAGAATAGGTACTATTCTTTCAGGGACCAAAGTTC  1083

seq1  AGTTTCTGGCGCCCATGACAAGTGGCTCTAAACTGCCTGTCACTGCAGCT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGGCGCCCATGACAAGTGGCTCTAAACTGCCTGTCACTGCAGCT  1133

seq1  CTAGGGAATTC  1161
      |||||||||||
seq2  CTAGGGAATTC  1144

seq1: chr11_105862448_105863615
seq2: B6Ng01-129N18.g_69_1215

seq1  GAATTCAGAACTGATTGCAAAACAGTTGTCATCAAGAGATGGCTCATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACTGATTGCAAAACAGTTGTCATCAAGAGATGGCTCATCTG  50

seq1  TTCCCCTACTTCACCAGCTATACTCCTGCTCTGAGAAGACCTTGAATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTACTTCACCAGCTATACTCCTGCTCTGAGAAGACCTTGAATTCC  100

seq1  AAGCTTGGACACCATTCTCCAGGCAGTGGCAGAGGAGAAGCTTCCGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGGACACCATTCTCCAGGCAGTGGCAGAGGAGAAGCTTCCGAAAA  150

seq1  CGGGGAGGAGTGTCACCTCCATCCGTCCAGGGATGCAGGCCCTGGTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAGGAGTGTCACCTCCATCCGTCCAGGGATGCAGGCCCTGGTGAGA  200

seq1  TCACATTAGGTCTTCTGGTTCCAAGGCCAGCTCTCCCACCACTGAGTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTAGGTCTTCTGGTTCCAAGGCCAGCTCTCCCACCACTGAGTTGG  250

seq1  GGCATCTACCCAGTGGCCGGATCTCTGTTCTCTTGACTGCTATTGATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTACCCAGTGGCCGGATCTCTGTTCTCTTGACTGCTATTGATTTG  300

seq1  GGTCTGTGTCTTTAATTGTTCAATGAGTTTTGTTTCTGCCTTGCAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTGTCTTTAATTGTTCAATGAGTTTTGTTTCTGCCTTGCAGAGAG  350

seq1  TTAGTGATACTTGACCTAGCATCCCCTGCATGCATTTTAGACTGTTAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGATACTTGACCTAGCATCCCCTGCATGCATTTTAGACTGTTAGTT  400

seq1  GTACTTCTGGTCTTTTGAGATAGGGTCTTGTAGCCCAGGCTAGCCTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCTGGTCTTTTGAGATAGGGTCTTGTAGCCCAGGCTAGCCTCAAA  450

seq1  CTTGAGATCCTCCCACACTACCTCCCTGAAGTGCTGGGATTACAGATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGATCCTCCCACACTACCTCCCTGAAGTGCTGGGATTACAGATATG  500

seq1  TGTCACTTTGCCTGGCTTCTTTTATATATGTAATGAGGTTATCTATGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTTGCCTGGCTTCTTTTATATATGTAATGAGGTTATCTATGGCT  550

seq1  CCTCCATGCCCTTTAACCATCTGCAACCACCAGATGGAGCAGAAGGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGCCCTTTAACCATCTGCAACCACCAGATGGAGCAGAAGGTTTG  600

seq1  GTCCTCTGGGCTTTGTTTCTAGAGAGGTCCAATAATATGAGCATCATCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGGGCTTTGTTTCTAGAGAGGTCCAATAATATGAGCATCATCAC  650

seq1  CACCATTATCACCACCCCCTGTCAGTTCTTCCTTCCTTTATACATAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTATCACCACCCCCTGTCAGTTCTTCCTTCCTTTATACATAGGGA  700

seq1  TATGGATGTACGCATATGGATGTATACACACACAAACAAGTGGGCTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATGTACGCATATGGATGTATACACACACAAACAAGTGGGCTCTTC  750

seq1  ATTCAACCTCTGCTGCTTGTATTGTTCACTTAGCATTTACTTGGAACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACCTCTGCTGCTTGTATTGTTCACTTAGCATTTACTTGGAACAGG  800

seq1  CCTGATCAGTC-TTCCTGTGTCCAGCAGAGGGCAATAGACTACGAAATAA  849
      ||||||||||| ||| ||||||||||||||||||||||||||||||||||
seq2  CCTGATCAGTCTTTCTTGTGTCCAGCAGAGGGCAATAGACTACGAAATAA  850

seq1  ACGAA-TCCTAAACTACTAAAAAGAAGACTAAACAGAAGAGACTTTGCTG  898
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  ACGAATTCCTAAACTACTAAAAAGAAGACT-AACAGAAGAGACTTTGCTG  899

seq1  AATATGAAGAGGGTTAGGAAGTCCAGCAGGGAACCAAAGAAAATGTCTGT  948
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  AATATGAAGAGGTTTAGGAAGTCCAGCA-GGAACCAAAGAAAATGTCTGT  948

seq1  CCCCAAAAGCAGACACAGAAGAAAATGACGTGTGTTTTCT-CCCCAGGAG  997
      |||||||   |||| ||||   |||||||||||||||||| |||||| ||
seq2  CCCCAAA--GAGACCCAGA--GAAATGACGTGTGTTTTCTCCCCCAGAAG  994

seq1  CTCATGTCTAACTCCCCTTTATGCCTCTTGCTTGGAGGGACACTTGACGT  1047
      |||||||||||||||||||||   |||||||||||| | ||  |||||||
seq2  CTCATGTCTAACTCCCCTTTA--GCTCTTGCTTGGA-GTAC-TTTGACGT  1040

seq1  CAGTCATTCTCTCTACTTCCCTCTCTTACCCTACCCAGCGTACACAGGAC  1097
      |||||||||| ||||||| ||| || || |||| |||||| |||  | ||
seq2  CAGTCATTCT-TCTACTT-CCTGTC-TAACCTA-CCAGCGAACAAGGAAC  1086

seq1  TCTGTTTAACTAAACCCCAAAACACGTGACATTGTTCATCAGCCCCCACG  1147
      |||| || || | ||||  |   |||||||  |||  ||     ||||||
seq2  TCTGGTTTAC-ATACCCTGA---ACGTGACTGTGTCTAT---ATCCCACG  1129

seq1  CCCCTTCACTGTCTACACCCC  1168
      ||||||  ||||| |||||||
seq2  CCCCTT--CTGTC-ACACCCC  1147