BAC Information

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BAC

Clone NameB6Ng01-129O02
Chromosome11 (Build37)
Map Location 69,141,737 - 69,290,960
singlet/doubletdoublet
Overlap geneKcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2
Upstream geneNtn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1
Downstream geneEfnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129O02.bB6Ng01-129O02.g
ACCDH931350DH931351
length1,138930
definitionDH931350|Mus musculus domesticus DNA, BAC clone: B6Ng01-129O02, 5' end.DH931351|Mus musculus domesticus DNA, BAC clone: B6Ng01-129O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,141,737 - 69,142,873)(69,290,034 - 69,290,960)
sequence
gaattctctcttgcaggtacctgggtcacgtttggctctcagatctcaga
tgaggtatatgtgatgggacctagaaacagggtccaggtggttgtggcga
gggaataagaaaaggatttggatgagcctgggggcagggtaaaggacctg
aagctagaggatgagcaaaggagagaaaatgtggggaccagggctgaagt
gctgtgggttaagatgcaggcagggaagtcactaagggcaaccgttcatc
ttcaactttttctcgcctccctagacagcagaagatctcctgacagttgc
ctatgagcacggcgtaaacctgtttgacactgctgaagtgtacgcggcag
gaaagtaagaactggggtgaaagagtaaagttatatttggaaggcagctt
gagagaacatcagggattcttgtttccctctttgaagagagagacctggg
aattctgggaacaataaagttccaacttttcaggctagtagacaccctgt
gtattgtgggagttgtagttcccacaatgctttcccctctggattagagg
tcattagacattactgtgcagtcacattcaaataaaaccaacaaatttat
cctgaagctgtattttcaaacacagcacatcacatcccatgcctatggcc
ttacgttgggagcagccgaagtctacattgcctactctgcctctttattt
gataaacattcttcttcaagacttagctcagggtcagctcctccaagaaa
cctttacccaactgcccagaattggtcatgaccatcgagcacccgtgaca
atcggtactactttctgacattaagtaaatgtctgcttcatacaagtata
tttgctgctcaactcagagccttcccaccttccctggagcttctcttctc
aggatcttcatagagaccagcaaacacatgcactgtttctgggaagaggt
cacataagcttgaaaaacatagagtctaggagattatacaaacaagggac
ataggaaagatccagcgttataccatggttcaatatttcagacttgtcac
agcccatatcatgtactaacagaactctatagggctgggcatgaatgcac
ttcaccttataagtttccagccatgggagggtaagggg
gaattcttgggatctggatgcggttggaggtgacctcagcctgggacgtg
gtgccatccagccttggctacattgatgcttctgttcttgcctgttgccc
catcctacaggtgtcaatactaaataagtattcagaggccatcaggggga
acttgaccaagatcatgagacttaagattgtggctctggtgacgatagaa
attcacgcccgcgacgtgctggaaaagctctacaagagcggcctcatgga
tgtcagttcctttgactggctcagccagctgcgcttctactgggagaagg
tggcgaagacggatcgactcgctcctctcttaggcccagactgacccatc
atgcttctgtgcatggacgcgtgctatcttctaacccagacccttggact
ttcagagcttcctcctcgaaggtttagctctgtcgcaatcccagctcagg
agtggccagtggttactccaggcaatactccttctaagtgccacttgatg
gccactctcagatcccaagcagctatttccatggattggggtgggggaag
acatgctgtgtggaacccattttctcttgtggccccaaaccatacccttc
tctgtagctctaaaccaaaacccttaatccacctgcaaccctcctgacgt
ctctgagccctgctggtagccatttccacgtttccctgaagccccgcccc
tgaagccccgcctctgtctcattctttttctgttctttccaggatgtgga
tgactgtataatccgccagaccaacacacaattccaatatggttatgagt
acttggggaactctggtcggttggtcatcactcccctgacagacaggtct
gctgttggggggtaaaccggtgtcctggggtaggatctgcagagatgaca
aaatcttccatccatctgggccaagtcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_69141737_69142873
seq2: B6Ng01-129O02.b_50_1187

seq1  GAATTCTCTCTTGCAGGTACCTGGGTCACGTTTGGCTCTCAGATCTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTTGCAGGTACCTGGGTCACGTTTGGCTCTCAGATCTCAGA  50

seq1  TGAGGTATATGTGATGGGACCTAGAAACAGGGTCCAGGTGGTTGTGGCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTATATGTGATGGGACCTAGAAACAGGGTCCAGGTGGTTGTGGCGA  100

seq1  GGGAATAAGAAAAGGATTTGGATGAGCCTGGGGGCAGGGTAAAGGACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATAAGAAAAGGATTTGGATGAGCCTGGGGGCAGGGTAAAGGACCTG  150

seq1  AAGCTAGAGGATGAGCAAAGGAGAGAAAATGTGGGGACCAGGGCTGAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGAGGATGAGCAAAGGAGAGAAAATGTGGGGACCAGGGCTGAAGT  200

seq1  GCTGTGGGTTAAGATGCAGGCAGGGAAGTCACTAAGGGCAACCGTTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGGTTAAGATGCAGGCAGGGAAGTCACTAAGGGCAACCGTTCATC  250

seq1  TTCAACTTTTTCTCGCCTCCCTAGACAGCAGAAGATCTCCTGACAGTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTTTTTCTCGCCTCCCTAGACAGCAGAAGATCTCCTGACAGTTGC  300

seq1  CTATGAGCACGGCGTAAACCTGTTTGACACTGCTGAAGTGTACGCGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGCACGGCGTAAACCTGTTTGACACTGCTGAAGTGTACGCGGCAG  350

seq1  GAAAGTAAGAACTGGGGTGAAAGAGTAAAGTTATATTTGGAAGGCAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAAGAACTGGGGTGAAAGAGTAAAGTTATATTTGGAAGGCAGCTT  400

seq1  GAGAGAACATCAGGGATTCTTGTTTCCCTCTTTGAAGAGAGAGACCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACATCAGGGATTCTTGTTTCCCTCTTTGAAGAGAGAGACCTGGG  450

seq1  AATTCTGGGAACAATAAAGTTCCAACTTTTCAGGCTAGTAGACACCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGGGAACAATAAAGTTCCAACTTTTCAGGCTAGTAGACACCCTGT  500

seq1  GTATTGTGGGAGTTGTAGTTCCCACAATGCTTTCCCCTCTGGATTAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTGGGAGTTGTAGTTCCCACAATGCTTTCCCCTCTGGATTAGAGG  550

seq1  TCATTAGACATTACTGTGCAGTCACATTCAAATAAAACCAACAAATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGACATTACTGTGCAGTCACATTCAAATAAAACCAACAAATTTAT  600

seq1  CCTGAAGCTGTATTTTCAAACACAGCACATCACATCCCATGCCTATGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGCTGTATTTTCAAACACAGCACATCACATCCCATGCCTATGGCC  650

seq1  TTACGTTGGGAGCAGCCGAAGTCTACATTGCCTACTCTGCCTCTTTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGTTGGGAGCAGCCGAAGTCTACATTGCCTACTCTGCCTCTTTATTT  700

seq1  GATAAACATTCTTCTTCAAGACTTAGCTCAGGGTCAGCTCCTCCAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACATTCTTCTTCAAGACTTAGCTCAGGGTCAGCTCCTCCAAGAAA  750

seq1  CCTTTACCCAACTGCCCAGAATTGGTCATGACCATCGAGCACCCGTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACCCAACTGCCCAGAATTGGTCATGACCATCGAGCACCCGTGACA  800

seq1  ATCGGTACTACTTTCTGACATTAAGTAAATGTCTGCTTCATACAAGTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGTACTACTTTCTGACATTAAGTAAATGTCTGCTTCATACAAGTATA  850

seq1  TTTGCTGCTCAACTCAGAGCCTTCCCACC-TCCCTGGAGCTTCTCTTCTC  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTGCTGCTCAACTCAGAGCCTTCCCACCTTCCCTGGAGCTTCTCTTCTC  900

seq1  AGGAACCTTCATAGAGACCAGCAAAACACATGCACTGTTTCTGGGAAGAG  949
      ||| | |||||||||||||||| |||||||||||||||||||||||||||
seq2  AGG-ATCTTCATAGAGACCAGC-AAACACATGCACTGTTTCTGGGAAGAG  948

seq1  GTCAACATAAGCTTGAAAAACATAGAGTCTAGGAGATTATACAAACAAGG  999
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTC-ACATAAGCTTGAAAAACATAGAGTCTAGGAGATTATACAAACAAGG  997

seq1  GACATAGGAAAGATCCAGCGTTATACCATGGTTCAATAATTTCAGACTTG  1049
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GACATAGGAAAGATCCAGCGTTATACCATGGTTCAAT-ATTTCAGACTTG  1046

seq1  TCACAGCCCATAATCATGTACTAACAGAACTCTATA-GGCTGGGCATGAT  1098
      ||||||||||| |||||||||||||||||||||||| |||||||||||| 
seq2  TCACAGCCCAT-ATCATGTACTAACAGAACTCTATAGGGCTGGGCATGAA  1095

seq1  GGCAC-TCACC-TATA--GTTCCAGCATTGGGAGGGTAAGGGG  1137
       |||| ||||| ||||   |||||||  |||||||||||||||
seq2  TGCACTTCACCTTATAAGTTTCCAGCCATGGGAGGGTAAGGGG  1138

seq1: chr11_69290034_69290960
seq2: B6Ng01-129O02.g_69_998 (reverse)

seq1  CATGACTTGGGCCAGATGACTGGAAGATTCTGTCATCTCTGCAGTTCCTA  50
      |||||||||| |||||||  ||||||||| |||||||||||||| |||||
seq2  CATGACTTGGCCCAGATGGATGGAAGATTTTGTCATCTCTGCAGATCCTA  50

seq1  CCCCAGAACACCGGTTTACCCCCCCACAGCAGACCTGTCTGTCAGGGGAG  100
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  CCCCAGGACACCGGTTTACCCCCCAACAGCAGACCTGTCTGTCAGGGGAG  100

seq1  TGATGACCAGCCGACCAGAGTTCCCCAAGTACTCATAACCATATTGGAAT  150
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACCAACCGACCAGAGTTCCCCAAGTACTCATAACCATATTGGAAT  150

seq1  TGTGTGTTGGTCTGGCGGATTATACAGTCATCCACATCCTGG-AAGAACA  199
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTGTGTTGGTCTGGCGGATTATACAGTCATCCACATCCTGGAAAGAACA  200

seq1  G-AAAAGAATGAGACAGAGGCGGGGCTTCAGGGGCGGGGCTTCAGGG-AA  247
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAAAAAGAATGAGACAGAGGCGGGGCTTCAGGGGCGGGGCTTCAGGGAAA  250

seq1  CGTGGAAATGGCTACCAGCAGGGCTCAGAGACGTCAGGAGGGTTGCAGGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAAATGGCTACCAGCAGGGCTCAGAGACGTCAGGAGGGTTGCAGGT  300

seq1  GGATTAAGGGTTTTGGTTTAGAGCTACAGAGAAGGGTATGGTTTGGGGCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAGGGTTTTGGTTTAGAGCTACAGAGAAGGGTATGGTTTGGGGCC  350

seq1  ACAAGAGAAAATGGGTTCCACACAGCATGTCTTCCCCCACCCCAATCCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGAAAATGGGTTCCACACAGCATGTCTTCCCCCACCCCAATCCAT  400

seq1  GGAAATAGCTGCTTGGGATCTGAGAGTGGCCATCAAGTGGCACTTAGAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAGCTGCTTGGGATCTGAGAGTGGCCATCAAGTGGCACTTAGAAG  450

seq1  GAGTATTGCCTGGAGTAACCACTGGCCACTCCTGAGCTGGGATTGCGACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTGCCTGGAGTAACCACTGGCCACTCCTGAGCTGGGATTGCGACA  500

seq1  GAGCTAAACCTTCGAGGAGGAAGCTCTGAAAGTCCAAGGGTCTGGGTTAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAAACCTTCGAGGAGGAAGCTCTGAAAGTCCAAGGGTCTGGGTTAG  550

seq1  AAGATAGCACGCGTCCATGCACAGAAGCATGATGGGTCAGTCTGGGCCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGCACGCGTCCATGCACAGAAGCATGATGGGTCAGTCTGGGCCTA  600

seq1  AGAGAGGAGCGAGTCGATCCGTCTTCGCCACCTTCTCCCAGTAGAAGCGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAGCGAGTCGATCCGTCTTCGCCACCTTCTCCCAGTAGAAGCGC  650

seq1  AGCTGGCTGAGCCAGTCAAAGGAACTGACATCCATGAGGCCGCTCTTGTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCTGAGCCAGTCAAAGGAACTGACATCCATGAGGCCGCTCTTGTA  700

seq1  GAGCTTTTCCAGCACGTCGCGGGCGTGAATTTCTATCGTCACCAGAGCCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTTCCAGCACGTCGCGGGCGTGAATTTCTATCGTCACCAGAGCCA  750

seq1  CAATCTTAAGTCTCATGATCTTGGTCAAGTTCCCCCTGATGGCCTCTGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTAAGTCTCATGATCTTGGTCAAGTTCCCCCTGATGGCCTCTGAA  800

seq1  TACTTATTTAGTATTGACACCTGTAGGATGGGGCAACAGGCAAGAACAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTTAGTATTGACACCTGTAGGATGGGGCAACAGGCAAGAACAGA  850

seq1  AGCATCAATGTAGCCAAGGCTGGATGGCACCACGTCCCAGGCTGAGGTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAATGTAGCCAAGGCTGGATGGCACCACGTCCCAGGCTGAGGTCA  900

seq1  CCTCCAACCGCATCCAGATCCCAAGAATTC  927
      ||||||||||||||||||||||||||||||
seq2  CCTCCAACCGCATCCAGATCCCAAGAATTC  930