BAC Information

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BAC

Clone NameB6Ng01-130M05
Chromosome11 (Build37)
Map Location 13,371,345 - 13,414,818
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC627244
Downstream geneLOC432535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130M05.bB6Ng01-130M05.g
ACCDH931994DH931995
length1,055961
definitionDH931994|Mus musculus domesticus DNA, BAC clone: B6Ng01-130M05, 5' end.DH931995|Mus musculus domesticus DNA, BAC clone: B6Ng01-130M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,413,749 - 13,414,818)(13,371,345 - 13,372,318)
sequence
gaattcatatgcttcctaaagtttattccaatgtagatgatattatccaa
tatccattccatggttttaaaaaaccatgtaccaccattaaagcaaaata
cgttgtcttgcgtaatatggtcacactgagctgaactccagtaagctcaa
taatttacactttacaatacacatttaactttctatgaaaataggaactg
tgcctaaattaaaatatacatcacagaaggtgctgtgctgagttcatggg
tggtttgaagatagtgtgcttgtttggttgttaggatgtgacacacagta
gatttatttggtattccagtacacttaatcacctattatgttgttaaaaa
gtgtaacaataccctctgtgtgttatttcataagccataagttttatgtg
tgttatatcagagtacttcctgaaatacaagttttgaagaataaatgaaa
acgtatttactaaaactaaagtaatttttagatttcatataaaaacatag
tcaaatacaatgatatagttttaatatagtctgtctcctctgaaactgat
gtgaccattgattctcctagtgagatattttggtgttggttgttgtcaaa
ctgacacaaacacagacatatctgagaagagaaaacttcactgacgaaca
acaaccacctttcataagactggcctggatgaccaggtgtggtggcacaa
gactttaatcccagcactcgggagacagaggtaaacagatttctgagttc
aaggccagcctggtctacaaagtgagttccaggacagccagggctataca
tagaaaccctgtctcaaaaacaaaaacaaaacaaaaacaaaaaccaacaa
caacaaacaaaacaaaaagactggcctagatgaaaacctgtgtggcattt
tcctgattataattggtgtagaagcaaccagcctgagcatgagatcctgg
ggtgtatagaaaacatattgagcagccaacatatgcagccactacagcat
cactccatagttctctgtttcagtctacatcagatgtcagcctgaatcct
gctct
gaattctttagtaatatcacagaaaaaaacagggagggtctgtgactttg
cagtgtcctggtaacacattcaaaatataggtaataaatctaatgggaat
agaaagttctctgaagagcgaaaattgagtttatccatgaaaacatcagt
gctaacatttgttcatatatttcattaagaaataaccttgaataggtaat
gtcttctgtttggcacattttctctagactacatcagttttctaaatatc
acttatgaaaaccatattgctatgcaccacagatgtctcaacagaactgt
taacattttcaaatgaagatttgggaaatttttctcaaaacagatcaaaa
atcttgtaatgccagtagctagttgatgagttgatatttggaatcctttt
aggtagagagctgagtaatccatgtatttgttgaactagttaaaataatt
ccactctatcaataatagcatgttaaaggacaggacatgggtgacattta
ctagaagggcaaaatgtagacaatggatcataaataaagaataacatacg
agttgtatgtaagtgatatagtagggaatttgtgaggaaatatttaaaga
aatgggaatacaaagggaacaaacctgttagtcactgtttccataacctc
caagaccataaaggtttccacaatatctaacagaatcaagaaaacagaaa
acaatatagatagtttaatatcagtgtagacaaaggttctgtaaaagatg
tattttaagattccatacaccgttaggcttcattaatgatactccttaga
gtttgtgttttctgacaagcaatagatgaatgcacattgctcattaataa
ggcaagagccatattatggtgacctttttctgataaacaagctctaagaa
tgctttgaaatgagctcatacatgtcagtatttctgtatgaagtggactc
tgaatattagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_13413749_13414818
seq2: B6Ng01-130M05.b_41_1095 (reverse)

seq1  AGAGCAGGGATTCAAGGCTGACATCTGGATGTAAGAACTGAAACAGAG-A  49
      |||||| |||||| |||||||||||| ||||||   |||||||||||| |
seq2  AGAGCA-GGATTC-AGGCTGACATCT-GATGTA--GACTGAAACAGAGAA  45

seq1  CTATGGAGTGATGCTGTAGTGGCTTGCATATGTTGGCTTGCTCAATATGT  99
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  CTATGGAGTGATGCTGTAGTGGC-TGCATATGTTGGC-TGCTCAATATGT  93

seq1  TTTCCTATACACCCCAGGATCTCATGCTCAGGCTGGTTGCTTCTACACCA  149
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTT-CTATACACCCCAGGATCTCATGCTCAGGCTGGTTGCTTCTACACCA  142

seq1  ATTATTAATCAGGAAAATGCCACACAGGTTTTCATCTAGGCCAGTCTTTT  199
      |||| ||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTA-TAATCAGGAAAATGCCACACAGGTTTTCATCTAGGCCAGTC-TTT  190

seq1  TTGTTTTTGTTTTGTTGTTGTTGGTTTTTTGTTTTTTGTTTTTGTTTTTG  249
      |||||||   |||||||||||||| |||||||||||   |||||||||||
seq2  TTGTTTT--GTTTGTTGTTGTTGG-TTTTTGTTTTT--GTTTTGTTTTTG  235

seq1  TTTTTTGAGACAGGGTTTCTATGTATAGCCCTGGCTGTCCTGGAACTCAC  299
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTTGAGACAGGGTTTCTATGTATAGCCCTGGCTGTCCTGGAACTCAC  284

seq1  TTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGTTTACCTCTGTCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGTTTACCTCTGTCTC  334

seq1  CCGAGTGCTGGGATTAAAGTCTTGTGCCACCACACCTGGTCATCCAGGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTGCTGGGATTAAAGTCTTGTGCCACCACACCTGGTCATCCAGGCC  384

seq1  AGTCTTATGAAAGGTGGTTGTTGTTCGTCAGTGAAGTTTTCTCTTCTCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTATGAAAGGTGGTTGTTGTTCGTCAGTGAAGTTTTCTCTTCTCAG  434

seq1  ATATGTCTGTGTTTGTGTCAGTTTGACAACAACCAACACCAAAATATCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCTGTGTTTGTGTCAGTTTGACAACAACCAACACCAAAATATCTC  484

seq1  ACTAGGAGAATCAATGGTCACATCAGTTTCAGAGGAGACAGACTATATTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAGAATCAATGGTCACATCAGTTTCAGAGGAGACAGACTATATTA  534

seq1  AAACTATATCATTGTATTTGACTATGTTTTTATATGAAATCTAAAAATTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATATCATTGTATTTGACTATGTTTTTATATGAAATCTAAAAATTA  584

seq1  CTTTAGTTTTAGTAAATACGTTTTCATTTATTCTTCAAAACTTGTATTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTTTTAGTAAATACGTTTTCATTTATTCTTCAAAACTTGTATTTC  634

seq1  AGGAAGTACTCTGATATAACACACATAAAACTTATGGCTTATGAAATAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTACTCTGATATAACACACATAAAACTTATGGCTTATGAAATAAC  684

seq1  ACACAGAGGGTATTGTTACACTTTTTAACAACATAATAGGTGATTAAGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGGGTATTGTTACACTTTTTAACAACATAATAGGTGATTAAGTG  734

seq1  TACTGGAATACCAAATAAATCTACTGTGTGTCACATCCTAACAACCAAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGAATACCAAATAAATCTACTGTGTGTCACATCCTAACAACCAAAC  784

seq1  AAGCACACTATCTTCAAACCACCCATGAACTCAGCACAGCACCTTCTGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACACTATCTTCAAACCACCCATGAACTCAGCACAGCACCTTCTGTG  834

seq1  ATGTATATTTTAATTTAGGCACAGTTCCTATTTTCATAGAAAGTTAAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATTTTAATTTAGGCACAGTTCCTATTTTCATAGAAAGTTAAATG  884

seq1  TGTATTGTAAAGTGTAAATTATTGAGCTTACTGGAGTTCAGCTCAGTGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGTAAAGTGTAAATTATTGAGCTTACTGGAGTTCAGCTCAGTGTG  934

seq1  ACCATATTACGCAAGACAACGTATTTTGCTTTAATGGTGGTACATGGTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATTACGCAAGACAACGTATTTTGCTTTAATGGTGGTACATGGTTT  984

seq1  TTTAAAACCATGGAATGGATATTGGATAATATCATCTACATTGGAATAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACCATGGAATGGATATTGGATAATATCATCTACATTGGAATAAA  1034

seq1  CTTTAGGAAGCATATGAATTC  1070
      |||||||||||||||||||||
seq2  CTTTAGGAAGCATATGAATTC  1055

seq1: chr11_13371345_13372318
seq2: B6Ng01-130M05.g_65_1025

seq1  GAATTCTTTAGTAATATCACAGAAAAAAACAGGGAGGGTCTGTGACTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGTAATATCACAGAAAAAAACAGGGAGGGTCTGTGACTTTG  50

seq1  CAGTGTCCTGGTAACACATTCAAAATATAGGTAATAAATCTAATGGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCTGGTAACACATTCAAAATATAGGTAATAAATCTAATGGGAAT  100

seq1  AGAAAGTTCTCTGAAGAGCGAAAATTGAGTTTATCCATGAAAACATCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTCTCTGAAGAGCGAAAATTGAGTTTATCCATGAAAACATCAGT  150

seq1  GCTAACATTTGTTCATATATTTCATTAAGAAATAACCTTGAATAGGTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACATTTGTTCATATATTTCATTAAGAAATAACCTTGAATAGGTAAT  200

seq1  GTCTTCTGTTTGGCACATTTTCTCTAGACTACATCAGTTTTCTAAATATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGTTTGGCACATTTTCTCTAGACTACATCAGTTTTCTAAATATC  250

seq1  ACTTATGAAAACCATATTGCTATGCACCACAGATGTCTCAACAGAACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGAAAACCATATTGCTATGCACCACAGATGTCTCAACAGAACTGT  300

seq1  TAACATTTTCAAATGAAGATTTGGGAAATTTTTCTCAAAACAGATCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTTCAAATGAAGATTTGGGAAATTTTTCTCAAAACAGATCAAAA  350

seq1  ATCTTGTAATGCCAGTAGCTAGTTGATGAGTTGATATTTGGAATCCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTAATGCCAGTAGCTAGTTGATGAGTTGATATTTGGAATCCTTTT  400

seq1  AGGTAGAGAGCTGAGTAATCCATGTATTTGTTGAACTAGTTAAAATAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAGAGCTGAGTAATCCATGTATTTGTTGAACTAGTTAAAATAATT  450

seq1  CCACTCTATCAATAATAGCATGTTAAAGGACAGGACATGGGTGACATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTATCAATAATAGCATGTTAAAGGACAGGACATGGGTGACATTTA  500

seq1  CTAGAAGGGCAAAATGTAGACAATGGATCATAAATAAAGAATAACATACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGGGCAAAATGTAGACAATGGATCATAAATAAAGAATAACATACG  550

seq1  AGTTGTATGTAAGTGATATAGTAGGGAATTTGTGAGGAAATATTTAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTATGTAAGTGATATAGTAGGGAATTTGTGAGGAAATATTTAAAGA  600

seq1  AATGGGAATACAAAGGGAACAAACCTGTTAGTCACTGTTTCCATAACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAATACAAAGGGAACAAACCTGTTAGTCACTGTTTCCATAACCTC  650

seq1  CAAGACCAT-AAGGTTTCCACAATATCTAACAGAATCAAGAAAACAGAAA  699
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCATAAAGGTTTCCACAATATCTAACAGAATCAAGAAAACAGAAA  700

seq1  ACAATATAGATAGTTTAATATCAGTGTAGACAAAGGTTCTGTAAAAGATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATAGATAGTTTAATATCAGTGTAGACAAAGGTTCTGTAAAAGATG  750

seq1  TATTTTAAGATTCCATACACCGTTAGGCTTCATTAATGATACTCCTTAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAGATTCCATACACCGTTAGGCTTCATTAATGATACTCCTTAGA  800

seq1  GTTTGTGTTTTCTGACAAGCAATAGGATGAAATGCACATTTGCTCAATTA  849
      |||||||||||||||||||||||| |||| |||||||| |||||| ||||
seq2  GTTTGTGTTTTCTGACAAGCAATA-GATG-AATGCACA-TTGCTC-ATTA  846

seq1  ATAAGGCAAGAGCCATATTATGGTTGACCTTTTTCTGATAAAACAAGCTT  899
      ||||||||||||||||||||||| ||||||||||||||| |||||||| |
seq2  ATAAGGCAAGAGCCATATTATGG-TGACCTTTTTCTGAT-AAACAAGC-T  893

seq1  CTAAGAATGCTTGTGAAATTGAGCTCAATTACCATGTCAGTATTTCTGTA  949
      |||||||||||| ||||| ||||||||  || ||||||||||||||||||
seq2  CTAAGAATGCTT-TGAAA-TGAGCTCA--TA-CATGTCAGTATTTCTGTA  938

seq1  TTGAAAGTGGACTCTGAATATTAGT  974
      |   |||||||||||||||||||||
seq2  T--GAAGTGGACTCTGAATATTAGT  961