BAC Information

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BAC

Clone NameB6Ng01-133C13
Chromosome11 (Build37)
Map Location 59,944,535 - 60,136,756
singlet/doubletdoublet
Overlap geneRai1, Srebf1, Tom1l2
Upstream geneA230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt
Downstream geneLOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133C13.bB6Ng01-133C13.g
ACCDH933782DH933783
length5881,073
definitionDH933782|Mus musculus domesticus DNA, BAC clone: B6Ng01-133C13, 5' end.DH933783|Mus musculus domesticus DNA, BAC clone: B6Ng01-133C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,136,163 - 60,136,756)(59,944,535 - 59,945,623)
sequence
agttcctagttcctgagttatatgtggttactcaaaaccacatataactc
agctacaggagatctgatgtcctcttcaggctcttatgggaaccgacact
cacagacacatacagatacacacacagagagacacacacagacaaacaca
cacacacacacacatacacacagcttttaaagtagcatgaaatgagatgt
ctgctaacagcatcataacaaaataccacatactggctggctttgatagt
acctactctctcatagttctggaggccctggagtctaaggtcctcgctcc
ctggctcttgcagaaggccatctaccgccatctaccttcttgctctgtgc
tcacacagccattcttctaggcatctgagatttgaagaggactgctctaa
caactcttttattttgttcttggggttttttgtttgtttgtttgtttttt
gtttttcgagacaggacttcttggtatatccttggctgtcctggaacttg
ctctgtagaccaggctggcctcgaactcatagagatccacctgtctctgc
ctcctgagtgctgggaataagggtgtgctccaccactg
gaattccatactgagctcagatggaagactcagacctcacagagcaggag
gaaatgactattgtcaggagtgacatgtcatggcaaacttcatgaagatg
aatttctattcatcctttacatgatgaattccctgatgctcttcccattt
taaaggaaaagaaactaaggcttagaaacataatgaacttcagtttccac
actgacatatttggagaattatattaactcttcattactataacatgtac
tcgagataggtcacttcaacagaggtttgttttgggcatacagttttgga
agtatagggcccaaccagcatagcacaggccctggtgcaccacaccatga
tggcagtgtgagtatctctgactctgctctttctcctctctctataaagc
catcaggagacttctattccagtgatcaaatcaaacctaacacttctcaa
aggccacagaaggatcatgtttctatttcctcacacaatttgtttgtaaa
ggattcatttattttgtgtatgtgtgtacactgtcactttctccagacac
accagaagagggcatccaatcccattacaaatggttgtgggctaccatgt
ggttgctgggaattgaactcaggacttttggaagaggagtcaatgttctt
aactgctgagccatctctccagtcctcctcacacaattgatagggtgtct
tagttacttttctactgctgtgtagaggcatccaggcctatgtctgttct
ccaagctgcagtttctggttgctccagatgactctggacatatgactcaa
aagatggctgtgaagtcagtcttatgtgggatgtcttgcagaatgggcat
cctgctctgcatgtttcctcctcctttaaaaaaaataccacacttgtatc
atggcagaatggttctctctttctatcttgtgagtcctggattgaaccca
ggtcatcagtttggtaccagcacctttacttgcggagccatctcactggc
tttcttgatacaacatataactatgcaggattctgagagaacctagctgg
gcaggaactagacagacatcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_60136163_60136756
seq2: B6Ng01-133C13.b_47_640 (reverse)

seq1  CAGTGGTGGAGCACACCCTTATTCCCAGCACTCAGGAGGCAGAGACAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTGGAGCACACCCTTATTCCCAGCACTCAGGAGGCAGAGACAGGT  50

seq1  GGATCTCTATGAGTTCGAGGCCAGCCTGGTCTACAGAGCAAGTTCCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCTATGAGTTCGAGGCCAGCCTGGTCTACAGAGCAAGTTCCAGGA  100

seq1  CAGCCAAGGATATACCAAGAAGTCCTGTCTCGAAAAACAAAAAACAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAGGATATACCAAGAAGTCCTGTCTCGAAAAACAAAAAACAAACA  150

seq1  AACAAACAAAAAACCCCAAGAACAAAATAAAAGAGTTGTTAGAGCAGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAAAACCCCAAGAACAAAATAAAAGAGTTGTTAGAGCAGTCC  200

seq1  TCTTCAAATCTCAGATGCCTAGAAGAATGGCTGTGTGAGCACAGAGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAATCTCAGATGCCTAGAAGAATGGCTGTGTGAGCACAGAGCAAG  250

seq1  AAGGTAGATGGCGGTAGATGGCCTTCTGCAAGAGCCAGGGAGCGAGGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGATGGCGGTAGATGGCCTTCTGCAAGAGCCAGGGAGCGAGGACC  300

seq1  TTAGACTCCAGGGCCTCCAGAACTATGAGAGAGTAGGTACTATCAAAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTCCAGGGCCTCCAGAACTATGAGAGAGTAGGTACTATCAAAGCC  350

seq1  AGCCAGTATGTGGTATTTTGTTATGATGCTGTTAGCAGACATCTCATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTATGTGGTATTTTGTTATGATGCTGTTAGCAGACATCTCATTTC  400

seq1  ATGCTACTTTAAAAGCTGTGTGTATGTGTGTGTGTGTGTGTGTTTGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACTTTAAAAGCTGTGTGTATGTGTGTGTGTGTGTGTGTTTGTCTG  450

seq1  TGTGTGTCTCTCTGTGTGTGTATCTGTATGTGTCTGTGAGTGTCGGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTCTCTGTGTGTGTATCTGTATGTGTCTGTGAGTGTCGGTTCC  500

seq1  CATAAGAGCCTGAAGAGGACATCAGATCTCCTGTAGCTGAGTTATATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAGCCTGAAGAGGACATCAGATCTCCTGTAGCTGAGTTATATGTG  550

seq1  GTTTTGAGTAACCACATATAACTCAGGAACTAGGAACTGAATTC  594
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGTAACCACATATAACTCAGGAACTAGGAACTGAATTC  594

seq1: chr11_59944535_59945623
seq2: B6Ng01-133C13.g_70_1142

seq1  GAATTCCATACTGAGCTCAGATGGAAGACTCAGACCTCACAGAGCAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACTGAGCTCAGATGGAAGACTCAGACCTCACAGAGCAGGAG  50

seq1  GAAATGACTATTGTCAGGAGTGACATGTCATGGCAAACTTCATGAAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGACTATTGTCAGGAGTGACATGTCATGGCAAACTTCATGAAGATG  100

seq1  AATTTCTATTCATCCTTTACATGATGAATTCCCTGATGCTCTTCCCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTATTCATCCTTTACATGATGAATTCCCTGATGCTCTTCCCATTT  150

seq1  TAAAGGAAAAGAAACTAAGGCTTAGAAACATAATGAACTTCAGTTTCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAAAGAAACTAAGGCTTAGAAACATAATGAACTTCAGTTTCCAC  200

seq1  ACTGACATATTTGGAGAATTATATTAACTCTTCATTACTATAACATGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATATTTGGAGAATTATATTAACTCTTCATTACTATAACATGTAC  250

seq1  TCGAGATAGGTCACTTCAACAGAGGTTTGTTTTGGGCATACAGTTTTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGATAGGTCACTTCAACAGAGGTTTGTTTTGGGCATACAGTTTTGGA  300

seq1  AGTATAGGGCCCAACCAGCATAGCACAGGCCCTGGTGCACCACACCATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGGGCCCAACCAGCATAGCACAGGCCCTGGTGCACCACACCATGA  350

seq1  TGGCAGTGTGAGTATCTCTGACTCTGCTCTTTCTCCTCTCTCTATAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTGTGAGTATCTCTGACTCTGCTCTTTCTCCTCTCTCTATAAAGC  400

seq1  CATCAGGAGACTTCTATTCCAGTGATCAAATCAAACCTAACACTTCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGAGACTTCTATTCCAGTGATCAAATCAAACCTAACACTTCTCAA  450

seq1  AGGCCACAGAAGGATCATGTTTCTATTTCCTCACACAATTTGTTTGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACAGAAGGATCATGTTTCTATTTCCTCACACAATTTGTTTGTAAA  500

seq1  GGATTCATTTATTTTGTGTATGTGTGTACACTGTCACTTTCTCCAGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCATTTATTTTGTGTATGTGTGTACACTGTCACTTTCTCCAGACAC  550

seq1  ACCAGAAGAGGGCATCCAATCCCATTACAAATGGTTGTGGGCTACCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAGAGGGCATCCAATCCCATTACAAATGGTTGTGGGCTACCATGT  600

seq1  GGTTGCTGGGAATTGAACTCAGGACTTTTGGAAGAGGAGTCAATGTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTGGGAATTGAACTCAGGACTTTTGGAAGAGGAGTCAATGTTCTT  650

seq1  AACTGCTGAGCCATCTCTCCAGTCCTCCTCACACAATTGATA-GGTGTCT  699
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACTGCTGAGCCATCTCTCCAGTCCTCCTCACACAATTGATAGGGTGTCT  700

seq1  TAGTTACTTTTCTACTGCTGTGTAGAGGCATCCAGGCCTATGTCTGTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACTTTTCTACTGCTGTGTAGAGGCATCCAGGCCTATGTCTGTTCT  750

seq1  CCAAGCTGCAGTTTCTGGTTGCTCCAGATGACTCTGGACATATGACTCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTGCAGTTTCTGGTTGCTCCAGATGACTCTGGACATATGACTCAA  800

seq1  AAGATGGCTGTGAAGTCAGTCTTATGTGGGATGTCTTGCAGAATGGGCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGCTGTGAAGTCAGTCTTATGTGGGATGTCTTGCAGAATGGGCAT  850

seq1  CCTGCTCTGCATG-TTCCTCCTCCTTTAAAAAAAAAATACCACACTTGTA  898
      ||||||||||||| |||||||||||||  |||||||||||||||||||||
seq2  CCTGCTCTGCATGTTTCCTCCTCCTTT--AAAAAAAATACCACACTTGTA  898

seq1  TCATGGCAGAATGGGTTCTCTCTTTCTATCTTGTGAGTCCTGGATTGAAC  948
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCATGGCAGAAT-GGTTCTCTCTTTCTATCTTGTGAGTCCTGGATTGAAC  947

seq1  CCAGGTCATCAGGTTTGGTACCAGGCACCTTTACTTGCGGAGCCATCTCA  998
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  CCAGGTCATCA-GTTTGGTACCA-GCACCTTTACTTGCGGAGCCATCTCA  995

seq1  CTGGCCTTTTCTTTGATACAACCATATAAACTAATGCAGGGGATTCTGAG  1048
      |||||  |||| ||||||||| ||||| |||| |||||  ||||||||||
seq2  CTGGC--TTTC-TTGATACAA-CATAT-AACT-ATGCA--GGATTCTGAG  1037

seq1  AGAAACCTAAGCTGGGCAGGAAACTAGAACAGACATTCTTC  1089
      || ||||| ||||||||||| |||||| ||||||| |||||
seq2  AG-AACCT-AGCTGGGCAGG-AACTAG-ACAGACA-TCTTC  1073