BAC Information

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BAC

Clone NameB6Ng01-133E13
Chromosome3 (Build37)11 (Build37)
Map Location 60,945,283 - 60,946,22556,898,393 - 56,898,482
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
Downstream geneRap2b, LOC666891, LOC669910, LOC676965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133E13.bB6Ng01-133E13.g
ACCDH933870DH933871
length1,012851
definitionDH933870|Mus musculus domesticus DNA, BAC clone: B6Ng01-133E13, 5' end.DH933871|Mus musculus domesticus DNA, BAC clone: B6Ng01-133E13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,945,283 - 60,946,225)(56,898,393 - 56,898,482)
sequence
gaattcttttgctcaaaatcaccctcaagtttagcatttatttaatgtct
ctttagaacagtggttcttaacctctggtccccaatccctttggaggcca
tatatctgatatcctgcatatcatatatatatatatatatatatatatat
atatatatatatgtatgtatattacaattcacaacagtagaaaaattata
gtaataaagtagcaacaaaataatcttgtctttgggggtcatgttatatg
aagaactgtattaaagggccacagcattagaaaggctgagaagcactgac
ttaaacccatcttggtttatatatgaggaaagattatgaacgtgtgtaga
tatgtgtacatgcttgtgtacatggaagtacaagtgcacatgcatacaca
agtccatggaggccagagtttaacatttgttcttatactggttaacagtc
accttgacaatctagggcaacatgagagaacagcctcaattgatgcattt
ttctagaacagactgtgccataagcaagtctgttggggactgtattgatg
attaattgtgcaagaggaccctacccactgttattgacaccatttcctgg
atatgtagtcttgggtactattaaaaaaaaaaagctagctgagttcaata
agcctgtgaaccagctagcacggagtagcttccagggtttcttctgtagt
tctttggctgcagtgtgagttccctaattcaaggtacaattgtgtggaat
agcaagtgggacttgagttcctgccttgtttataattcagtaatggactg
tgacctgaaactgtatattgaatgaatcatttccacttttcaagttgttt
tttggtcagtgttttatcacaatataaacaaaagtctcattcctgggaaa
ccatcctacttgtttttgagttgtgacttttaactggaacctggagtttg
ctgattagggtaagctgcctgtccatggtgcccaaatatccctccacagc
taggatgatagg
gaattcttcataaaactaggaaaaaaaatcctaaaacttgtgtggaacca
tgaaagactccaaagacccaaatttctgagtaaaaagcagaatgctggtt
cgtctttgctctaatagtaatatgcagcatgattctggcacagaaccaaa
aatgcagtctgatgaactaaattagaggactggggcaaaaagacacacag
ccgagctggttttcagcaatgtctcaatggtgacaaaaacacactttgag
aatgaagagcatctaacaaacgtactgggaaaactgaatatccaaacaca
tgcgacagaaactagaccccattttcaccctgtaaaataaccaactcaaa
acacatgaaaggcattcaagcctgccctaatactctgaaagtcatgtggg
aaagagagggaaccaaaacaatggctttgtgagcagaactccagtagctc
aggaaataataggaagaattgacaaatgtggtcacacaaaacaatttcac
acagccaagggaacaatcaatgctgtaaatagacagcctacagaatggga
aaaaaaaatcgttgtcatctattcacacaacaggaaattaatatctaccc
tacacaaagaggtaaagtttccaaacatcaaaagaacaagtaatccgaaa
aataaatagacatacgaactgaacagacagttgtcaaaaggagaagcatg
aataactcataatttcatgaaaataggttcaccatgcatagccatcgaga
aaggcaaatcaaaacttcatccaaaaattgtcttgataagtcagaatagt
cattgtctcccaaaatatgtgtgtgtgtgtgtgtgtgtttgtgtgttatg
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_60945283_60946225
seq2: B6Ng01-133E13.b_49_993 (reverse)

seq1  TCCAGGTTCCAGTTAAAAGTCACATCTCAAAAACAAGTAGGATGGTTTCC  50
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCCAGGTTCCAGTTAAAAGTCACAACTCAAAAACAAGTAGGATGGTTTCC  50

seq1  CAGGAATGAGACTTTTGTTTATATTGTGATAAAACACTGACC-AAAAACA  99
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAGGAATGAGACTTTTGTTTATATTGTGATAAAACACTGACCAAAAAACA  100

seq1  ACTTG-AAAGTGGAAATGATTCATTCAATATACAGTTTCAGGTCACAGTC  148
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAAAGTGGAAATGATTCATTCAATATACAGTTTCAGGTCACAGTC  150

seq1  CATTACTGAATTATAAACAAGGCAGGAACTCAAGTCCCACTTGCTATTCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTGAATTATAAACAAGGCAGGAACTCAAGTCCCACTTGCTATTCC  200

seq1  ACACAATTGTACCTTGAATTAGGGAACTCACACTGCAGCCAAAGAACTAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATTGTACCTTGAATTAGGGAACTCACACTGCAGCCAAAGAACTAC  250

seq1  AGAAGAAACCCTGGAAGCTACTCCGTGCTAGCTGGTTCACAGGCTTATTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAACCCTGGAAGCTACTCCGTGCTAGCTGGTTCACAGGCTTATTG  300

seq1  AACTCAGCTAGCTTTTTTTTTTTAATAGTACCCAAGACTACATATCCAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGCTAGCTTTTTTTTTTTAATAGTACCCAAGACTACATATCCAGG  350

seq1  AAATGGTGTCAATAACAGTGGGTAGGGTCCTCTTGCACAATTAATCATCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTGTCAATAACAGTGGGTAGGGTCCTCTTGCACAATTAATCATCA  400

seq1  ATACAGTCCCCAACAGACTTGCTTATGGCACAGTCTGTTCTAGAAAAATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTCCCCAACAGACTTGCTTATGGCACAGTCTGTTCTAGAAAAATG  450

seq1  CATCAATTGAGGCTGTTCTCTCATGTTGCCCTAGATTGTCAAGGTGACTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATTGAGGCTGTTCTCTCATGTTGCCCTAGATTGTCAAGGTGACTG  500

seq1  TTAACCAGTATAAGAACAAATGTTAAACTCTGGCCTCCATGGACTTGTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAGTATAAGAACAAATGTTAAACTCTGGCCTCCATGGACTTGTGT  550

seq1  ATGCATGTGCACTTGTACTTCCATGTACACAAGCATGTACACATATCTAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTGCACTTGTACTTCCATGTACACAAGCATGTACACATATCTAC  600

seq1  ACACGTTCATAATCTTTCCTCATATATAAACCAAGATGGGTTTAAGTCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTTCATAATCTTTCCTCATATATAAACCAAGATGGGTTTAAGTCAG  650

seq1  TGCTTCTCAGCCTTTCTAATGCTGTGGCCCTTTAATACAGTTCTTCATAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTCAGCCTTTCTAATGCTGTGGCCCTTTAATACAGTTCTTCATAT  700

seq1  AACATGACCCCCAAAGACAAGATTATTTTGTTGCTACTTTATTACTATAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGACCCCCAAAGACAAGATTATTTTGTTGCTACTTTATTACTATAA  750

seq1  TTTTTCTACTGTTGTGAATTGTAATATACATACATATATATATATATATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTACTGTTGTGAATTGTAATATACATACATATATATATATATATA  800

seq1  TATATATATATATATATATATATGATATGCAGGATATCAGATATATGGCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATGATATGCAGGATATCAGATATATGGCC  850

seq1  TCCAAAGGGATTGGGGACCAGAGGTTAAGAACCACTGTTCTAAAGAGACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGGGATTGGGGACCAGAGGTTAAGAACCACTGTTCTAAAGAGACA  900

seq1  TTAAATAAATGCTAAACTTGAGGGTGATTTTGAGCAAAAGAATTC  943
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAATGCTAAACTTGAGGGTGATTTTGAGCAAAAGAATTC  945

seq1: chr11_56898393_56898482
seq2: B6Ng01-133E13.g_879_917 (reverse)

seq1  ACATATGTACACACAAACACACACACATACACGTATGCACATACACACAC  50
                                            |||||     ||
seq2  --------------------------------------ACATA-----AC  7

seq1  ACACATGCACACACACAGGCATGCACACACACACATATTT  90
      |||||  ||||||||        |||||||||||||||||
seq2  ACACAAACACACACA--------CACACACACACATATTT  39