BAC Information

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BAC

Clone NameB6Ng01-134G07
Chromosome11 (Build37)
Map Location 27,274,006 - 27,379,849
singlet/doubletdoublet
Overlap genenone
Upstream geneFancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
Downstream geneLOC100042377, EG626571, Ccdc85a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134G07.bB6Ng01-134G07.g
ACCDH934703DH934704
length1,0881,176
definitionDH934703|Mus musculus domesticus DNA, BAC clone: B6Ng01-134G07, 5' end.DH934704|Mus musculus domesticus DNA, BAC clone: B6Ng01-134G07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,274,006 - 27,275,101)(27,378,669 - 27,379,849)
sequence
gaattcatgcaaagacttgcttgtgtaaaaatgtataacttatgataatg
ctggtatgtagtgcatgaatgtagagagccccccagacttcagatcatta
aatgaaagaaattttctgtgagcttgatacagtattcaaagagtgtctcc
ttaaagtaatgatacccaggaacccaagataatcttacttttaaccaaac
caaaccaaaacaaaccaaaccaaaccaaaacaaaacacaggtctttaatt
aacagagtgagcagccattagtctgtaggcaagtgtccttaaaggcaaaa
gggaggacacgtgcaaaaaggatgaacagtgaagatggagggatggattg
gagtgatttagtcacacaccaagaattcaagagaggacttttaattagtg
ccatctggggtatcatgaccttctgaccccttgatttctacttctatatt
ttgaaactctgagagaataagatttcattgtttagtttaatatttaatat
ttccatattgtaccataagaagattaacaccccaagaatatgactcataa
tagaacttacaacacttttcatagactatgttttttttttttaatgtgtg
atttctacctgaaaatctactgaaatcattgctagaaaaaaaaaataaag
ctaaaataaggatacccatgttgtgagttagagccttaaagaacacatag
cctccaagggcatttttaccaaagctggaaaagttgccagcctggatgct
gccacagctgcacttccttggctacaaataccaagtagtagaattagaat
gggctcaggtgataaagaactcccaccctttggtattcctcagttgaaaa
ttctttgtttagctatgtacaccatttttaatggggttatttgaatttct
ggactccagcttcttgagctctttgtatatatttggtagtagtcccctat
cagatttaggattggtaaaaatactttcccaatctgtgggtgcctttttg
tcttatgacagtaccttcaccttacagaagctttgcatttatgagtccaa
tcgttgattcttgatcttttagccaagcaattcgaagg
gaattcctcttctcccagaaccctgtgatctgagcccaaccaaacttaca
taaccaggaactatttgttaactctctattagttatgtaatctaacttag
ctatttactgcctcatgtcagggccagagatatgatttaaatcccttttc
tagtaattggggttatgtagtttctgtccttgaattgagtccttgattat
gagggttctggcttaatgtcctccatgcctgctaacatctaatgatgtac
ttaatgccctgctgtgagttactttcctgtgagctagggaactactattt
tgaggagttcacctgtgtctccatataaaaaggatcacccaaacttggct
tgttaactccttttgtctcctcaaagaagtccaaggaaggtcacatcagc
ctccagatattgccatttcctacgtggctttgggaaaatgttcattccta
ataggaaaagtttttccagatgaagtctgttgtggaccccaacacccatt
cctatgatctgtaattaatgtcattgaaaccttaccccagagtgaatttt
gcagtaactgtgcctcagttaatcattggtacattagaaaaaggggtata
tgctgcttatatcttcccattgcatggaattttaacaaaatattccaatt
tttagagtgtgccaacaattggcctagtgtttggttcttctttgcaagtg
gcttaagagtataaaaagcaactgcaatgaactttttgattgcattaaaa
ctacatgaaaatgtaattgtaagagagattctgtttcttttaaatcacat
aatcctggttgagagttatgagttctacttctctttgctctcagtctttg
ttttttttttgttattaaaaaaaattttgtaaagtcattatggaggtaaa
tgaagtaattttgtagcccatagattcaattaatgtccagatctgcctca
tttacaggtatatttttcctttaccaaaccctcctcattagataagaaag
tgtagtcattagtttagaaaatatatatggtagctcaacacttgacacct
ctatcaccttaaatttttggtccttggcttctgcacttagaaagaaaaga
cgcgacctgttaatagtcagacttctccattagggaagaactgaacttga
gggagtgtcccaacttacatgctcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_27274006_27275101
seq2: B6Ng01-134G07.b_50_1137

seq1  GAATTCATGCAAAGACTTGCTTGTGTAAAAATGTATAACTTATGATAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCAAAGACTTGCTTGTGTAAAAATGTATAACTTATGATAATG  50

seq1  CTGGTATGTAGTGCATGAATGTAGAGAGCCCCCCAGACTTCAGATCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATGTAGTGCATGAATGTAGAGAGCCCCCCAGACTTCAGATCATTA  100

seq1  AATGAAAGAAATTTTCTGTGAGCTTGATACAGTATTCAAAGAGTGTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGAAATTTTCTGTGAGCTTGATACAGTATTCAAAGAGTGTCTCC  150

seq1  TTAAAGTAATGATACCCAGGAACCCAAGATAATCTTACTTTTAACCAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTAATGATACCCAGGAACCCAAGATAATCTTACTTTTAACCAAAC  200

seq1  CAAACCAAAACAAACCAAACCAAACCAAAACAAAACACAGGTCTTTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAAAACAAACCAAACCAAACCAAAACAAAACACAGGTCTTTAATT  250

seq1  AACAGAGTGAGCAGCCATTAGTCTGTAGGCAAGTGTCCTTAAAGGCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGTGAGCAGCCATTAGTCTGTAGGCAAGTGTCCTTAAAGGCAAAA  300

seq1  GGGAGGACACGTGCAAAAAGGATGAACAGTGAAGATGGAGGGATGGATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGACACGTGCAAAAAGGATGAACAGTGAAGATGGAGGGATGGATTG  350

seq1  GAGTGATTTAGTCACACACCAAGAATTCAAGAGAGGACTTTTAATTAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATTTAGTCACACACCAAGAATTCAAGAGAGGACTTTTAATTAGTG  400

seq1  CCATCTGGGGTATCATGACCTTCTGACCCCTTGATTTCTACTTCTATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGGGGTATCATGACCTTCTGACCCCTTGATTTCTACTTCTATATT  450

seq1  TTGAAACTCTGAGAGAATAAGATTTCATTGTTTAGTTTAATATTTAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTCTGAGAGAATAAGATTTCATTGTTTAGTTTAATATTTAATAT  500

seq1  TTCCATATTGTACCATAAGAAGATTAACACCCCAAGAATATGACTCATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATATTGTACCATAAGAAGATTAACACCCCAAGAATATGACTCATAA  550

seq1  TAGAACTTACAACACTTTTCATAGACTATGTTTTTTTTTTTTAATGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTACAACACTTTTCATAGACTATGTTTTTTTTTTTTAATGTGTG  600

seq1  ATTTCTACCTGAAAATCTACTGAAATCATTGCTAGAAAAAAAAAATAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTACCTGAAAATCTACTGAAATCATTGCTAGAAAAAAAAAATAAAG  650

seq1  CTAAAATAAGGATACCCATGTTGTGAGTTAGAGCCTTAAAGAACACATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATAAGGATACCCATGTTGTGAGTTAGAGCCTTAAAGAACACATAG  700

seq1  CCTCCAAGGGCATTTTTACCAAAGCTGGAAAAGTTGCCAGCCTGGATGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAGGGCATTTTTACCAAAGCTGGAAAAGTTGCCAGCCTGGATGCT  750

seq1  GCCACAGCTGCACTTCCTTGGCTACAAATACCAAGTAGTAGAATTAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGCTGCACTTCCTTGGCTACAAATACCAAGTAGTAGAATTAGAAT  800

seq1  GGGCTCAGGTGATAAAGAACTCCCACCCTTTGGTATTCCTCAGTTGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAGGTGATAAAGAACTCCCACCCTTTGGTATTCCTCAGTTGAAAA  850

seq1  TTCTTTGTTTAGCTATGTACACCATTTTTAATGGGGTTATTTGAATTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTTTAGCTATGTACACCATTTTTAATGGGGTTATTTGAATTTCT  900

seq1  GGACTCCAGCTTCTTGAGCTCTTTGTATATATTTGGTAGTAGTCCCCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCAGCTTCTTGAGCTCTTTGTATATATTTGGTAGTAGTCCCCTAT  950

seq1  CAGATTTAGGATTGGTAAAAATACTTTCCCAATCTGTTGGTTGCCTTTTT  1000
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  CAGATTTAGGATTGGTAAAAATACTTTCCCAATCTG-TGGGTGCCTTTTT  999

seq1  GTCTTATTGACAGTACCTTTCACCTTACAGAAGCTTTGCAATTCTATGAG  1050
      |||||| |||||||||| ||||||||||||||||||||||  | ||||||
seq2  GTCTTA-TGACAGTACC-TTCACCTTACAGAAGCTTTGCA--TTTATGAG  1045

seq1  GTCCCATTCGTTGATTCTTGATCTTATAGCACAAGCATATCGAAGG  1096
         ||| |||||||||||||||||| |||| ||||||  |||||||
seq2  --TCCAATCGTTGATTCTTGATCTTTTAGC-CAAGCAATTCGAAGG  1088

seq1: chr11_27378669_27379849
seq2: B6Ng01-134G07.g_65_1240 (reverse)

seq1  TTGAGCA-------------ACTCCCTCAAGTTCAGGTATACCTTTTCCT  37
      |||||||             ||||||||||||||||         ||| |
seq2  TTGAGCATGTAAGTTGGGACACTCCCTCAAGTTCAG---------TTCTT  41

seq1  CTAAAATGTAGAGTTCTGAACTATGTAACAGGT-GCTGCTCTTTCTATCT  86
      |   |||| |||  |||| ||||| |||||||| ||  || ||||| || 
seq2  CCCTAATGGAGAAGTCTG-ACTAT-TAACAGGTCGCGTCT-TTTCTTTC-  87

seq1  TAAGTGCAGAAGCAAGAGACAAAAGATTT-AGGTGATTAGA-GTGTCAAG  134
      ||||||||||||| |  ||| ||| |||| |||||| |||| ||||||||
seq2  TAAGTGCAGAAGCCAAGGACCAAAAATTTAAGGTGA-TAGAGGTGTCAAG  136

seq1  TGTTGAGCTTCCATATATATTTTCTAAACTAATGACTACCACTTTCTTAT  184
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  TGTTGAGCTACCATATATATTTTCTAAACTAATGACTA-CACTTTCTTAT  185

seq1  CCTAATGA-GAGGGTTTGGTAAAGGAAAAATATACCTGTAAAATGAGGCA  233
       ||||||| |||||||||||||||||||||||||||||| ||||||||| 
seq2  -CTAATGAGGAGGGTTTGGTAAAGGAAAAATATACCTGT-AAATGAGGC-  232

seq1  AGATCTGGACATTAATTGAATCTATTGGCTAACAAAAATTACTTCATTTT  283
      ||||||||||||||||||||||||| |||||   |||||||||||| |||
seq2  AGATCTGGACATTAATTGAATCTATGGGCTA--CAAAATTACTTCA-TTT  279

seq1  ACCTCCATAATGACTTTACAAAATTTTTTTTTAATAACAAAAAAAAAACA  333
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACCTCCATAATGACTTTACAAAA-TTTTTTTTAATAACAAAAAAAAAACA  328

seq1  AAGACTGAGAGCAAAGAGAAGTAGAACTCATAACTCTCAACCAGGATTAT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGAGAGCAAAGAGAAGTAGAACTCATAACTCTCAACCAGGATTAT  378

seq1  GTGATTTAAAAGAAACAGAATCTCTCTTACAATTACATTTTCATGTAGTT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTAAAAGAAACAGAATCTCTCTTACAATTACATTTTCATGTAGTT  428

seq1  TTAATGCAATCAAAAAGTTCATTGCAGTTGCTTTTTATACTCTTAAGCCA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCAATCAAAAAGTTCATTGCAGTTGCTTTTTATACTCTTAAGCCA  478

seq1  CTTGCAAAGAAGAACCAAACACTAGGCCAATTGTTGGCACACTCTAAAAA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAAGAAGAACCAAACACTAGGCCAATTGTTGGCACACTCTAAAAA  528

seq1  TTGGAATATTTTGTTAAAATTCCATGCAATGGGAAGATATAAGCAGCATA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATATTTTGTTAAAATTCCATGCAATGGGAAGATATAAGCAGCATA  578

seq1  TACCCCTTTTTCTAATGTACCAATGATTAACTGAGGCACAGTTACTGCAA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCTTTTTCTAATGTACCAATGATTAACTGAGGCACAGTTACTGCAA  628

seq1  AATTCACTCTGGGGTAAGGTTTCAATGACATTAATTACAGATCATAGGAA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACTCTGGGGTAAGGTTTCAATGACATTAATTACAGATCATAGGAA  678

seq1  TGGGTGTTGGGGTCCACAACAGACTTCATCTGGAAAAACTTTTCCTATTA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTGGGGTCCACAACAGACTTCATCTGGAAAAACTTTTCCTATTA  728

seq1  GGAATGAACATTTTCCCAAAGCCACGTAGGAAATGGCAATATCTGGAGGC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAACATTTTCCCAAAGCCACGTAGGAAATGGCAATATCTGGAGGC  778

seq1  TGATGTGACCTTCCTTGGACTTCTTTGAGGAGACAAAAGGAGTTAACAAG  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGACCTTCCTTGGACTTCTTTGAGGAGACAAAAGGAGTTAACAAG  828

seq1  CCAAGTTTGGGTGATCCTTTTTATATGGAGACACAGGTGAACTCCTCAAA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTTGGGTGATCCTTTTTATATGGAGACACAGGTGAACTCCTCAAA  878

seq1  ATAGTAGTTCCCTAGCTCACAGGAAAGTAACTCACAGCAGGGCATTAAGT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGTTCCCTAGCTCACAGGAAAGTAACTCACAGCAGGGCATTAAGT  928

seq1  ACATCATTAGATGTTAGCAGGCATGGAGGACATTAAGCCAGAACCCTCAT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATTAGATGTTAGCAGGCATGGAGGACATTAAGCCAGAACCCTCAT  978

seq1  AATCAAGGACTCAATTCAAGGACAGAAACTACATAACCCCAATTACTAGA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGGACTCAATTCAAGGACAGAAACTACATAACCCCAATTACTAGA  1028

seq1  AAAGGGATTTAAATCATATCTCTGGCCCTGACATGAGGCAGTAAATAGCT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGATTTAAATCATATCTCTGGCCCTGACATGAGGCAGTAAATAGCT  1078

seq1  AAGTTAGATTACATAACTAATAGAGAGTTAACAAATAGTTCCTGGTTATG  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGATTACATAACTAATAGAGAGTTAACAAATAGTTCCTGGTTATG  1128

seq1  TAAGTTTGGTTGGGCTCAGATCACAGGGTTCTGGGAGAAGAGGAATTC  1181
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTGGTTGGGCTCAGATCACAGGGTTCTGGGAGAAGAGGAATTC  1176