BAC Information

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BAC

Clone NameB6Ng01-134J08
Chromosome11 (Build37)
Map Location 120,531,532 - 120,706,206
singlet/doubletdoublet
Overlap geneAspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57
Upstream gene4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik
Downstream geneLOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134J08.bB6Ng01-134J08.g
ACCDH934844DH934845
length6721,086
definitionDH934844|Mus musculus domesticus DNA, BAC clone: B6Ng01-134J08, 5' end.DH934845|Mus musculus domesticus DNA, BAC clone: B6Ng01-134J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,705,665 - 120,706,206)(120,531,532 - 120,532,628)
sequence
gaattcactttgtagaccaggctagcctcgaactcagaaattctcctgcc
tctgcctcccaagtgctgggattaaaggcgtgagctaccacgcccgacca
gatctctgagtttgagggcagcctgatctacatagtcagttccaggacat
ctaaggctacatagtgagaccctgtctccaaaaataaaaagaaagaaaaa
aagaacatgcctagcatcaaatcacaattttataagacatatgaagtgta
taaaaatatgatccataacagaggattctaatgcctaacgctgggtggtt
ggttggtgcggcacgcccttactcagcacttgggaggcagagacaggtgg
atttctgagtttgagactagcctggtctctgtagtgagttccgggaaagc
cagggctacacagagaaaccctgtctcaaaaaaaaaaaaaaaaaataaaa
aaaaaaaaaaaaagacagtcctcatgtggtgaccccccaacaataaaatt
atttcgttgctatttcatatcagaaatttcattgtaaatatctgtcgtgt
gacccctcaaaggggtggagacccacaggttgagaaccccagacttaggt
agttctaggccaacttgagctattgggaatacatttgaagggggcatttt
ttatagattatttggccaggca
gaattcttttttgttggtttgtttgtttgtttgggtcagatatgctgttt
agcagctgtcatctttgcacttggaggcaaccagttcaaagtcagcctgg
tctatacagggtgagacagtcaatgatggtggcacatgcctgtaatccca
gcagtcatgctgtggaggcaggatcaacaataaaaggccatttaggctac
aggaaaccttatataaaacaaaacaacagagacaaacacaaagaatttaa
agttactcctcacaagaagcacagcagccagcgtgaaggcagtcataatg
actaaatttaggtcaatttaagcacgaaagaaacaatactcaaaccctac
aatgaaatggaaaaaaaaaaaggcatgaggggctagagagatggctcagt
ggttaagagcactggcagtttttccaggtgttgcaggttcaagtcccagc
acccacatggtagctcatagctatctataactccagttccaagggatttg
atacctacttctggcctctactggaaccaagggaatgcatgtgatataca
gacatgcttgcaggcaaaacttccacacatattatacacacacacacaca
cacacacacacacacacacacacatatatatatatatatatatgtttttt
tgtttttgtttttttgagatcgggtttctctgtgtagccctggctgtcct
ggaactctgaaatctgcctgtctctgcctcccaagtactgggattaaagg
catgcaccaccactgtctggccacatataaaatattaaaaaagaaaacct
aaaaaaaagaaaaaagaagggctggtgagatggctcagcaggtaagagca
cccgactgctcttccaaagggtccttagttcaaatccatgtcccagcaac
cacatggtggctcacaaccatccgtaacaagatctgacttcctcttctgg
tgtgtctgaggacagctcagtgtacttacatatataaatcaataaatcta
aaaaaagaaaaaagaatgataccctggattcacattaatttattattatg
attttttttagagaagaatgttctttttcttttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_120705665_120706206
seq2: B6Ng01-134J08.b_177_717 (reverse)

seq1  TGCCTGGCCAAATAAATCTTTAAAAAATGCCCCCTTCAAATGTATTGACA  50
      ||||||||||||| ||||| ||||||||||||||||||||||||||  ||
seq2  TGCCTGGCCAAAT-AATCTATAAAAAATGCCCCCTTCAAATGTATTCCCA  49

seq1  ATAGCTCAAGTTGGCCTAGAACTACCTAAGTCTGGGGTTCTCAACCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCAAGTTGGCCTAGAACTACCTAAGTCTGGGGTTCTCAACCTGTG  99

seq1  GGTCTCCACCCCTTTGAGGGGTCACATGACAGATATCTACAATGAAATTA  150
      |||||||||||||||||||||||||| ||||||||| |||||||||||| 
seq2  GGTCTCCACCCCTTTGAGGGGTCACACGACAGATATTTACAATGAAATTT  149

seq1  CAGATATGAAATAGCAACGAAATAATTTTATTGTTGGGGGGTCACCACAT  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATGAAATAGCAACGAAATAATTTTATTGTTGGGGGGTCACCACAT  199

seq1  GAGGACTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGA  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAGGACTGTCTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTGAGA  249

seq1  CAGGGTTTCTCTGTGTAGCCCTGGCTTTCCTGGAACTCACTACAGAGACC  300
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAGGGTTTCTCTGTGTAGCCCTGGCTTTCCCGGAACTCACTACAGAGACC  299

seq1  AGGCTAGTCTCAAACTCAGAAATCCACCTGTCTCTGCCTCCCAAGTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGTCTCAAACTCAGAAATCCACCTGTCTCTGCCTCCCAAGTGCTG  349

seq1  AGTAAGGGCGTGCCGCACCAACCAACCACCCAGCGTTAGGCATTAGAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGGCGTGCCGCACCAACCAACCACCCAGCGTTAGGCATTAGAATC  399

seq1  CTCTGTTATGGATCATATTTTTATACACTTCATATGTCTTATAAAATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTATGGATCATATTTTTATACACTTCATATGTCTTATAAAATTGT  449

seq1  GATTTGATGCTAGGCATGTTCTTTTTTTCTTTCTTTTTATTTTTGGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGATGCTAGGCATGTTCTTTTTTTCTTTCTTTTTATTTTTGGAGAC  499

seq1  AGGGTCTCACTATGTAGCCTTAGATGTCCTGGAACTGACTAT  542
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTCACTATGTAGCCTTAGATGTCCTGGAACTGACTAT  541

seq1: chr11_120531532_120532628
seq2: B6Ng01-134J08.g_66_1151

seq1  GAATTCTTTTTTGTTGGTTTGTTTGTTTGTTTGGGTCAGATATGCTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTGTTGGTTTGTTTGTTTGTTTGGGTCAGATATGCTGTTT  50

seq1  AGCAGCTGTCATCTTTGCACTTGGAGGCAACCAGTTCAAAGTCAGCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGTCATCTTTGCACTTGGAGGCAACCAGTTCAAAGTCAGCCTGG  100

seq1  TCTATACAGGGTGAGACAGTCAATGATGGTGGCACATGCCTGTAATCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACAGGGTGAGACAGTCAATGATGGTGGCACATGCCTGTAATCCCA  150

seq1  GCAGTCATGCTGTGGAGGCAGGATCAACAATAAAAGGCCATTTAGGCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCATGCTGTGGAGGCAGGATCAACAATAAAAGGCCATTTAGGCTAC  200

seq1  AGGAAACCTTATATAAAACAAAACAACAGAGACAAACACAAAGAATTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCTTATATAAAACAAAACAACAGAGACAAACACAAAGAATTTAA  250

seq1  AGTTACTCCTCACAAGAAGCACAGCAGCCAGCGTGAAGGCAGTCATAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTCCTCACAAGAAGCACAGCAGCCAGCGTGAAGGCAGTCATAATG  300

seq1  ACTAAATTTAGGTCAATTTAAGCACGAAAGAAACAATACTCAAACCCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATTTAGGTCAATTTAAGCACGAAAGAAACAATACTCAAACCCTAC  350

seq1  AATGAAATGGAAAAAAAAAAAGGCATGAGGGGCTAGAGAGATGGCTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATGGAAAAAAAAAAAGGCATGAGGGGCTAGAGAGATGGCTCAGT  400

seq1  GGTTAAGAGCACTGGCAGTTTTTCCAGGTGTTGCAGGTTCAAGTCCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGAGCACTGGCAGTTTTTCCAGGTGTTGCAGGTTCAAGTCCCAGC  450

seq1  ACCCACATGGTAGCTCATAGCTATCTATAACTCCAGTTCCAAGGGATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACATGGTAGCTCATAGCTATCTATAACTCCAGTTCCAAGGGATTTG  500

seq1  ATACCTACTTCTGGCCTCTACTGGAACCAAGGGAATGCATGTGATATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTACTTCTGGCCTCTACTGGAACCAAGGGAATGCATGTGATATACA  550

seq1  GACATGCTTGCAGGCAAAACTTCCACACATATTATACACACACACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCTTGCAGGCAAAACTTCCACACATATTATACACACACACACACA  600

seq1  CACACACACACACACACACACACATATATATATATATATATATGTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACATATATATATATATATATATGTTTTTT  650

seq1  TGTTTTTGTTTTTTTGAGATCGGGTTTCTCTGTGTAGCCCTGGCTGTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTTTTTTTGAGATCGGGTTTCTCTGTGTAGCCCTGGCTGTCCT  700

seq1  GGAACTCTGAAATCTGCCTGTCTCTGCCTCCCAAGTACTGGGATTAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCTGAAATCTGCCTGTCTCTGCCTCCCAAGTACTGGGATTAAAGG  750

seq1  CATGCACCACCACTGTCTGGCCACATATAAAATATTAAAAAAGAAAACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACCACCACTGTCTGGCCACATATAAAATATTAAAAAAGAAAACCT  800

seq1  -AAAAAAAGAAAAAAGAAGGGCTGGTGAGATGGCTCAGCAGGTAAGAGCA  849
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAAAAAAGAAGGGCTGGTGAGATGGCTCAGCAGGTAAGAGCA  850

seq1  CCCGACTGCTCTTCCAAA-GGTCCTTAGTTCAAATCCATGTCCCAGCAAC  898
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCGACTGCTCTTCCAAAGGGTCCTTAGTTCAAATCCATGTCCCAGCAAC  900

seq1  CACATGGTGGCTCACAACCATCCGTAACAAGATCTGACTCCCTCTTCTGG  948
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CACATGGTGGCTCACAACCATCCGTAACAAGATCTGACTTCCTCTTCTGG  950

seq1  TGTGTCTGAAGACAGCTGCAGTGTACTTACATATAATAAATAAATAAATC  998
      ||||||||| ||||||| |||||||||||||||| |||||| ||||||||
seq2  TGTGTCTGAGGACAGCT-CAGTGTACTTACATAT-ATAAATCAATAAATC  998

seq1  TAAAAAAAAAGAAAAAAAGAAGAAAACCCCAGAATTCACATTAATTTAAT  1048
      ||||||||    |||||||||  | | ||| | ||||||||||||||| |
seq2  TAAAAAAA---GAAAAAAGAATGATA-CCCTGGATTCACATTAATTTATT  1044

seq1  ATATATGATTTTTTTTTAAAGAG-AGATGTTTCTTTTTCTCTTTTTTATT  1097
      || |||||||||||||   |||| |||   |||||||||    |||||||
seq2  AT-TATGATTTTTTTT---AGAGAAGAATGTTCTTTTTC----TTTTATT  1086