BAC Information

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BAC

Clone NameB6Ng01-134O05
Chromosome11 (Build37)
Map Location 112,916,559 - 113,050,085
singlet/doubletdoublet
Overlap gene2610035D17Rik
Upstream geneLOC100041589, LOC100043020, EG668396, EG667038, LOC100041610, LOC671963, LOC667047, BC006965, Sox9
Downstream geneSlc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134O05.bB6Ng01-134O05.g
ACCDH935073DH935074
length3791,121
definitionDH935073|Mus musculus domesticus DNA, BAC clone: B6Ng01-134O05, 5' end.DH935074|Mus musculus domesticus DNA, BAC clone: B6Ng01-134O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,916,559 - 112,916,937)(113,048,956 - 113,050,085)
sequence
tttgttcagttctgagccccattttttaagggggttatttgattttctga
ggtccaccttcttgagttctttatatatgttggatattagtcccctatct
gatttaggataggtaaagatcctttcccagtctgttggtggtctttttgt
cttatagacagtgtcttttgccttgcagaaactttggagtttcattaggt
cccatttgtcaattctcgatcttacagcacaagccattgctgttctgttc
agggatattctatttcaaaatgaactcagatcctctccaaggaaggacat
ggagcccttttgccacagtccactgattgctctctctctctctctctctc
tctctctctctctctctctgtgtgtgtgt
gaattctgctctgtggagctgctaaggcccagccattcattcagttgctc
ctgaggcatagagaggccttgttacagcctggattgttctggccatgaga
aggactgccattcctcccccttttccctccaacttccctcccctcccctt
aggaaaaacttcaccccccctcccttcaacatccctgtctttaagaattc
cctccattgtagccctgggacagagacccttctgtgagcgtgctggaggc
ctgtcctggggacaccccgccccccctattaaaagcacattggaacaagc
tccccattctcctctggagagggtccctctgtcccaggccaagggactct
taagggaccgcttatcctgggacattcagtttacaaagactcctgcaatg
tcagataaactctctcagccagcagagggaggggggacaggaggagcaca
aaaccccctttattttcacccctgcagggagagcaataaagactttgtgc
tggagagcaggggtctgagcaaacagaagacgggggtctgcaccggcttt
gatgggaagagccttgtgggttattatcattgcagtttgggggaagtgtt
ggcatgggatggtcagttgcaagtttttcatcaggtaacagatcctgatc
ctgaagtcctccttcccccaatctggaaactaagaaaaaataaaaaaaaa
aaaaaaccctttggcaagttatctttgctggccaaggagaaatcccaagt
gaagtggttatatttttattttttcccctattatttggctagggaaaacc
tcccagttcagtagactgggcaccagctgtgtaactctgtatgtatttta
gaagagtcatggtctcaaggattttggtggctcactggggagggtgacca
ttctatgagtgccgtgtgtgtgtccctcactatttagagcagacctgatt
gtggtggtgcacagaaatttatttcctctcaggtcatagacaccaaaaag
ttctacaccagccatttttgaaaccaggccatctgaattgttttgtggac
tgccccggatggagtggtcctgtgacaatttatcgaagccctattccgtc
tcgatgaagtgacaggttcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_112916559_112916937
seq2: B6Ng01-134O05.b_52_430

seq1  TTTGTTCAGTTCTGAGCCCCATTTTTTAAGGGGGTTATTTGATTTTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCAGTTCTGAGCCCCATTTTTTAAGGGGGTTATTTGATTTTCTGA  50

seq1  GGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCT  100

seq1  GATTTAGGATAGGTAAAGATCCTTTCCCAGTCTGTTGGTGGTCTTTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGGATAGGTAAAGATCCTTTCCCAGTCTGTTGGTGGTCTTTTTGT  150

seq1  CTTATAGACAGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGACAGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGT  200

seq1  CCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTC  250

seq1  AGGGATATTCTATTTCAAAATGAACTCAGATCCTCTCCAAGGAAGGACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATATTCTATTTCAAAATGAACTCAGATCCTCTCCAAGGAAGGACAT  300

seq1  GGAGCCCTTTTGCCACAGTCCACTGATTGCTCTCTCTCTCTCTCTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCTTTTGCCACAGTCCACTGATTGCTCTCTCTCTCTCTCTCTCTC  350

seq1  TCTCTCTCTCTCTCTCTCTGTGTGTGTGT  379
      |||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTGTGTGTGTGT  379

seq1: chr11_113048956_113050085
seq2: B6Ng01-134O05.g_67_1187 (reverse)

seq1  ATGAGCCTGTC---TCATCGAGACGGTATAGGGC-TCGGTAAGTTGTTCA  46
      |||| ||||||   |||||||||||| ||||||| ||| ||| ||| |||
seq2  ATGAACCTGTCACTTCATCGAGACGGAATAGGGCTTCGATAAATTG-TCA  49

seq1  CAGGGCCCACTCCACTCCGTGGCTGTTCAACAAAC-ATTCAGATGCCCTG  95
      || || |||||||| |||| ||| || ||  |||| ||||||||| ||||
seq2  CA-GGACCACTCCA-TCCGGGGCAGTCCACAAAACAATTCAGATGGCCTG  97

seq1  CTCTCAAAAATGGCTGGTTGTAGAACTTTTTGGTGTCTATGACCTGAGA-  144
       | |||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  GTTTCAAAAATGGCTGG-TGTAGAACTTTTTGGTGTCTATGACCTGAGAG  146

seq1  GAAATAAATTTCTGTGCCACACCACAGTCAGGTCTGCTCTAAATAGTGAG  194
      |||||||||||||||||  ||||||| |||||||||||||||||||||||
seq2  GAAATAAATTTCTGTGCACCACCACAATCAGGTCTGCTCTAAATAGTGAG  196

seq1  GGACACACACACGGCACTCATAG-ATGGTCACCCTCCCCAGTGAGCCACC  243
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGACACACACACGGCACTCATAGAATGGTCACCCTCCCCAGTGAGCCACC  246

seq1  AAAAGTCCTTGAGACCATGACTCTTCTAAAATACATACAGAGTTACACAG  293
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAA-TCCTTGAGACCATGACTCTTCTAAAATACATACAGAGTTACACAG  295

seq1  CTGGTGCCCAGTCTACTGAACTGGGAGGTTTTCCCTAGCCAAATAATAGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCCCAGTCTACTGAACTGGGAGGTTTTCCCTAGCCAAATAATAGG  345

seq1  GGAAAAAATAAAAATATAACCACTTCACTTTGGGATTTCTCCTTGGCCAG  393
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGAAAAAATAAAAATATAACCACTTCAC-TTGGGATTTCTCCTTGGCCAG  394

seq1  CAAAGATAACTTGCCAAAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  443
      |||||||||||||||||||||          ||||||||||||||| |||
seq2  CAAAGATAACTTGCCAAAGGG----------TTTTTTTTTTTTTTTATTT  434

seq1  TTTTTTAGTTTCCAGATTGGGGGAAGGAGGACTTCAGGATCAGGATCTGT  493
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGTTTCCAGATTGGGGGAAGGAGGACTTCAGGATCAGGATCTGT  484

seq1  TACCTGATGAAAAACTTGCAACTGACCATCCCATGCCAACACTTCCCCCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGATGAAAAACTTGCAACTGACCATCCCATGCCAACACTTCCCCCA  534

seq1  AACTGCAATGATAATAACCCACAAGGCTCTTCCCATCAAAGCCGGTGCAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAATGATAATAACCCACAAGGCTCTTCCCATCAAAGCCGGTGCAG  584

seq1  ACCCCCGTCTTCTGTTTGCTCAGACCCCTGCTCTCCAGCACAAAGTCTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCGTCTTCTGTTTGCTCAGACCCCTGCTCTCCAGCACAAAGTCTTT  634

seq1  ATTGCTCTCCCTGCAGGGGTGAAAATAAAGGGGGTTTTGTGCTCCTCCTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCTCCCTGCAGGGGTGAAAATAAAGGGGGTTTTGTGCTCCTCCTG  684

seq1  TCCCCCCTCCCTCTGCTGGCTGAGAGAGTTTATCTGACATTGCAGGAGTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCTCCCTCTGCTGGCTGAGAGAGTTTATCTGACATTGCAGGAGTC  734

seq1  TTTGTAAACTGAATGTCCCAGGATAAGCGGTCCCTTAAGAGTCCCTTGGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAACTGAATGTCCCAGGATAAGCGGTCCCTTAAGAGTCCCTTGGC  784

seq1  CTGGGACAGAGGGACCCTCTCCAGAGGAGAATGGGGAGCTTGTTCCAATG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACAGAGGGACCCTCTCCAGAGGAGAATGGGGAGCTTGTTCCAATG  834

seq1  TGCTTTTAATAGGGGGGGCGGGGTGTCCCCAGGACAGGCCTCCAGCACGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTAATAGGGGGGGCGGGGTGTCCCCAGGACAGGCCTCCAGCACGC  884

seq1  TCACAGAAGGGTCTCTGTCCCAGGGCTACAATGGAGGGAATTCTTAAAGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAAGGGTCTCTGTCCCAGGGCTACAATGGAGGGAATTCTTAAAGA  934

seq1  CAGGGATGTTGAAGGGAGGGGGGGTGAAGTTTTTCCTAAGGGGAGGGGAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATGTTGAAGGGAGGGGGGGTGAAGTTTTTCCTAAGGGGAGGGGAG  984

seq1  GGAAGTTGGAGGGAAAAGGGGGAGGAATGGCAGTCCTTCTCATGGCCAGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTGGAGGGAAAAGGGGGAGGAATGGCAGTCCTTCTCATGGCCAGA  1034

seq1  ACAATCCAGGCTGTAACAAGGCCTCTCTATGCCTCAGGAGCAACTGAATG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCAGGCTGTAACAAGGCCTCTCTATGCCTCAGGAGCAACTGAATG  1084

seq1  AATGGCTGGGCCTTAGCAGCTCCACAGAGCAGAATTC  1130
      |||||||||||||||||||||||||||||||||||||
seq2  AATGGCTGGGCCTTAGCAGCTCCACAGAGCAGAATTC  1121