BAC Information

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BAC

Clone NameB6Ng01-135A01
Chromosome11 (Build37)
Map Location 54,452,024 - 54,621,047
singlet/doubletdoublet
Overlap geneRapgef6, Cdc42se2, LOC677786
Upstream geneLOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1
Downstream geneLOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp, Glra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135A01.bB6Ng01-135A01.g
ACCDH935161DH935162
length919998
definitionDH935161|Mus musculus domesticus DNA, BAC clone: B6Ng01-135A01, 5' end.DH935162|Mus musculus domesticus DNA, BAC clone: B6Ng01-135A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,620,451 - 54,621,047)(54,452,024 - 54,453,042)
sequence
gaattcaagcaactgttgtctacatgagaccctgctctgcccactcccaa
aagcataaaaacatatcatttgattaatgactctagcggaaccacagttc
ttcataggaagaaccaagtcaggcccagaactagaacaaggactgaggag
atgtctctgtggtaagagcacttctgggcaaacatgaagacctgagtttg
aatctcagcacctacataaaacaagtggtgtggctatggatgcctgtagt
cccagagctgtgggtgtcagagcaggaggacctgtgaggcttgctggctg
ccagtctagctccaagttcaatgggagaccctgcctcaagggcataaggt
aaagaatggacagcaagacatgcgacatctcctctggcctcagaaagcgc
cttactctaccaacaccacacaggcgcgcgcgcgcgcacatgcgcacgca
cacacacacacacacgcacacacgcacgcacgcacgcacgcacgcacgca
cgcacgcacgcacgcacgcacgcacgcacgcacatatactgctccaggtt
cagttcaggaccctgtctcaggccaggtggtggtggcgcacgcctctaat
cctagcaccctagaggcagaggcaggtggatctctgagtttgaggccagc
ctgatctccagagtgagttccaggacagccagggctacacagagaaactc
tgtctcgaaacccaaagacaatcaaaaagacccagtttcaaaataaatta
ataaatgaataataaataagtggagaacgtatgaggacaacactcagagt
tgacctctggcctgtgcatgcatgcttgcacgacagccacacccacatac
acaaacatgtatgtatacatgcacacacatacacaaaacggaaaaaaacg
acgtgggtaattggactcc
gaattctgacttttgcttctattgatgtgtcttttcctaatatatggttt
gtattctcttctactttgggaatttctgtgtcacttctgaagtctgtcct
ttgctgtttgtttgctgaagaatttctgctcattaagatttttatctttt
tctttgccctggggatttgcttcccccacccacccacctgtccatccatc
catccatccatccagtaaacaatttgtgtggtaatggggtataaccaaat
taaagaatccttctgtgaagaagcagtttctcacctgaaggaaaaatatc
acggtagtgttgcttttggctggctgcttgattgtttttattgaaaaaaa
gaaaaaaaataggaaatatttagaatcctaatctgtttttcccccttaag
acagagcctgactatttagctctgtactttcaatcctcctgccttagtat
tgggattataggcatgcagttatattcaatatgagcatgctgcttttaaa
ttaattgaattaatacattgggatgcactaaataccactttagactattt
gattataatctgcataaacatacataagtagtgtctttcgaactagacat
gattaaattttttctttacttataaattatcatatatgtatttgtgtgtg
ttctcattcacacacacaagtcatgatgtatgtgtggatgcctgagaagt
caattctctcttttcaccgtgtgaatcctggggatcaaagtcaagcttgg
gtggcaagcacctttaaccactcagccttctccccaatccctgttttatt
tttcccctccccctctttttagtttattttatgtggatgtataagttttt
gggaatgcctgtgaatttgtgcttgcccggagcctcagagatcagaacta
atgttgagttatggatgatgtgaggaccggggcgtgaactgaacagcatt
tctgaagatcgtactgccctgaccgttaggcgaatctttaggatccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_54620451_54621047
seq2: B6Ng01-135A01.b_40_635 (reverse)

seq1  GAGGCGTGCGCCACCACCACCTGGCCTGAGACAGGGTCCTGAACTGAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGTGCGCCACCACCACCTGGCCTGAGACAGGGTCCTGAACTGAACC  50

seq1  TGGAGCAGTATATGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAGTATATGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCG  100

seq1  TGCGTGCGTGCGTGCGTGCGTGCGTGTGTGCGTGTGTGTGTGTGTGTGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGCGTGCGTGCGTGCGTGCGTGTGTGCGTGTGTGTGTGTGTGTGCG  150

seq1  TGCGCATGTGCGCGCGCGCGCGCCTGTGTGGTGTTGGTAGAGTAAGGCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCATGTGCGCGCGCGCGCGCCTGTGTGGTGTTGGTAGAGTAAGGCGC  200

seq1  TTTCTGAGGCCAGAGGAGATGTCGCATGTCTTGCTGTCCATTCTTTACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGGCCAGAGGAGATGTCGCATGTCTTGCTGTCCATTCTTTACCT  250

seq1  TATGCCCTTGAGGCAGGGTCTCCCATTGAACTTGGAGCTAGACTGGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCTTGAGGCAGGGTCTCCCATTGAACTTGGAGCTAGACTGGCAGC  300

seq1  CAGCAAGCCTCACAGGTCCTCCTGCTCTGACACCCACAGCTCTGGGACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGCCTCACAGGTCCTCCTGCTCTGACACCCACAGCTCTGGGACTA  350

seq1  CAGGCATCCATAGCCACACCACTTGTTTTATGTAGGTGCTGAGATTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATCCATAGCCACACCACTTGTTTTATGTAGGTGCTGAGATTCAAA  400

seq1  CTCAGGTCTTCATGTTTGCCCAGAAGTGCTCTTACCACAGAGACATCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTCTTCATGTTTGCCCAGAAGTGCTCTTACCACAGAGACATCTCC  450

seq1  TCAGTCCTTGTTCTAGTTCTGGGCCTGACTTGGTTCTTCCTATGAAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCTTGTTCTAGTTCTGGGCCTGACTTGGTTCTTCCTATGAAGAAC  500

seq1  TGTGGTTCCGCTAGAGTCATTAATCAAATGATATGTTTTTATGCTTTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTCCGCTAGAGTCATTAATCAAATGATATGTTTTTATGCTTTTGG  550

seq1  GAGTGGGCAGAGCAGGGTCTCATGTAGACAACAGTTGCTTTGAATTC  597
      |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGTGGGCAGAGCAGGGTCTCATGTAGACAACAGTTGC-TTGAATTC  596

seq1: chr11_54452024_54453042
seq2: B6Ng01-135A01.g_67_1064

seq1  GAATTCTGACTTTTGCTTCTATTGATGTGTCTTTTCCTAATATATGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACTTTTGCTTCTATTGATGTGTCTTTTCCTAATATATGGTTT  50

seq1  GTATTCTCTTCTACTTTGGGAATTTCTGTGTCACTTCTGAAGTCTGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTCTTCTACTTTGGGAATTTCTGTGTCACTTCTGAAGTCTGTCCT  100

seq1  TTGCTGTTTGTTTGCTGAAGAATTTCTGCTCATTAAGATTTTTATCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTTTGTTTGCTGAAGAATTTCTGCTCATTAAGATTTTTATCTTTT  150

seq1  TCTTTGCCCTGGGGATTTGCTTCCCCCACCCACCCACCTGTCCATCCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCCCTGGGGATTTGCTTCCCCCACCCACCCACCTGTCCATCCATC  200

seq1  CATCCATCCATCCAGTAAACAATTTGTGTGGTAATGGGGTATAACCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCCATCCAGTAAACAATTTGTGTGGTAATGGGGTATAACCAAAT  250

seq1  TAAAGAATCCTTCTGTGAAGAAGCAGTTTCTCACCTGAAGGAAAAATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATCCTTCTGTGAAGAAGCAGTTTCTCACCTGAAGGAAAAATATC  300

seq1  ACGGTAGTGTTGCTTTTGGCTGGCTGCTTGATTGTTTTTATTGAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTAGTGTTGCTTTTGGCTGGCTGCTTGATTGTTTTTATTGAAAAAAA  350

seq1  GAAAAAAAATAGGAAATATTTAGAATCCTAATCTGTTTTTCCCCCTTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAATAGGAAATATTTAGAATCCTAATCTGTTTTTCCCCCTTAAG  400

seq1  ACAGAGCCTGACTATTTAGCTCTGTACTTTCAATCCTCCTGCCTTAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCTGACTATTTAGCTCTGTACTTTCAATCCTCCTGCCTTAGTAT  450

seq1  TGGGATTATAGGCATGCAGTTATATTCAATATGAGCATGCTGCTTTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTATAGGCATGCAGTTATATTCAATATGAGCATGCTGCTTTTAAA  500

seq1  TTAATTGAATTAATACATTGGGATGCACTAAATACCACTTTAGACTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGAATTAATACATTGGGATGCACTAAATACCACTTTAGACTATTT  550

seq1  GATTATAATCTGCATAAACATACATAAGTAGTGTCTTTCGAACTAGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATAATCTGCATAAACATACATAAGTAGTGTCTTTCGAACTAGACAT  600

seq1  GATTAAATTTTTTCTTTACTTATAAATTATCATATATGTATTTGTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAATTTTTTCTTTACTTATAAATTATCATATATGTATTTGTGTGTG  650

seq1  TTCTCATTCACACACACAAGTCATGATGTATGTGTGGATGCCTGAGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTCACACACACAAGTCATGATGTATGTGTGGATGCCTGAGAAGT  700

seq1  CAATTCTCTCTTTTCACCGTGTGGATCCTGGGGATCAAATTCAAGCTT-G  749
      ||||||||||||||||||||||| ||||||||||||||| |||||||| |
seq2  CAATTCTCTCTTTTCACCGTGTGAATCCTGGGGATCAAAGTCAAGCTTGG  750

seq1  GTGGCAAGCACCTTTAACCACTCAGCCATCTCCCCAGTCCCTGTTTTATT  799
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  GTGGCAAGCACCTTTAACCACTCAGCCTTCTCCCCAATCCCTGTTTTATT  800

seq1  TTTCCCCTCCCCCTCTTTTTTTAGGTTTATTTTATGTGTATGTATAAGTT  849
      ||||||||||||||||||||    |||||||||||||| |||||||||||
seq2  TTTCCCCTCCCCCTCTTTTT---AGTTTATTTTATGTGGATGTATAAGTT  847

seq1  TTTGTGTGAATGCCTGTGAATTGTATGCTTGCCCGGAGCCAGCAGAGATC  899
      ||  || ||||||||||||||| | |||||||||||||||  ||||||||
seq2  TT--TGGGAATGCCTGTGAATT-TGTGCTTGCCCGGAGCC-TCAGAGATC  893

seq1  AGAACAAAGTGTTGGAGTTATGGATGAGTGTGAGGCACCGTGGGCGTGGA  949
      ||||| || |||| ||||||||||||| ||||||| |||| |||||||  
seq2  AGAACTAA-TGTT-GAGTTATGGATGA-TGTGAGG-ACCG-GGGCGTG--  936

seq1  AACTGAACCTGCATTTTCTGTAAGAACAGTTCTTGCTCTGGACTGCTAGG  999
      ||||||| | ||| |||||| |||| | || | ||| || ||| | ||||
seq2  AACTGAA-CAGCA-TTTCTG-AAGATC-GTAC-TGCCCT-GACCGTTAGG  980

seq1  CCAGATCCTTTAGGATCCTA  1019
      |  ||  |||||||||||||
seq2  C--GAATCTTTAGGATCCTA  998