BAC Information

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BAC

Clone NameB6Ng01-136G04
Chromosome12 (Build37)11 (Build37)
Map Location 4,405,956 - 4,406,28660,981,513 - 60,982,568
singlet/doubletsingletsinglet
Overlap geneNcoa1
Upstream geneKif3c, LOC100043040, Asxl2, LOC627245, Dtnb, LOC668197, Dnmt3a, LOC668289, Pomc1, C030014M07Rik, C330021A05Rik, Adcy3, Cenpo, 2410017P09Rik
Downstream geneLOC100041995, LOC100042005, LOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b, LOC668332, Klhl29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136G04.bB6Ng01-136G04.g
ACCDH936170DH936171
length9211,054
definitionDH936170|Mus musculus domesticus DNA, BAC clone: B6Ng01-136G04, 5' end.DH936171|Mus musculus domesticus DNA, BAC clone: B6Ng01-136G04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,405,956 - 4,406,286)(60,981,513 - 60,982,568)
sequence
gaattcctttttcccacccttttaccccaaggctctatctttggtggtga
ggtatgtttcttggaggcagaaaagagatgggtcacattttctaattcag
tctgctagtctgtgtctttttcggggagggagggtgtctttttatttaag
agtttatttattttatgtatgtgagtatgtctttggacacagcagaagag
gatattggaccccattacaaatggttgtgagtcaccatgtggtttctggg
aattgaactggacctctggaagaacagtcggtgctgagccacctctccag
ctccaagggacggtgttttgagaaaggatttctctgtgctgtcccggaac
tcactctgtagaccagattggcctcaaactcagagatctcctggcctttg
cctcctgagtgatgggattaaaggcatcctccaccaccgcctgtgtcttt
ttactggggaattgagaccattactactgagagttattatggaaaggact
aattcctgcccttttgtggtgttttcttagatctttgatcacatgtccta
gctctgtttatttattctccgtagccttttggacgtgtttatccttcttt
tcagactaaagttttccttccagtggcctcggcagtactgacttagagaa
aataaattccttaaatctggctttattatggaatgttttaatttcttaat
tttaacaggtatgtgttctggctataatttatagtatagattggcagttg
tggtctttcaaagcatctagtacacccttcaaggctcctctggtcttact
atttccaaataatcaggaattatcccaatgggcgtgccttcatgagtgac
ccgtctctcatgcagctttcaataccttccacttgtctttatctttagtg
ttagtcataatatgggcgtgg
gaattctatgaagactttgggaaagctcgtatgtgtgcttgtatggtagt
aatttcagatggaacttgggtgccttttgtttatatcagatgtaagcaat
tcattcttactgctgatatctctgtcacattgtgccctggttgcccagtg
agcattccctacctcttcatctttctgtacctgacccaccatgctacaaa
ttggcatatgtgtgggtagtgtgaatatttattagacttgcctaccacta
tattcatagttgctgtgattgtcttgctgggtttctgtggtctctttctt
gacagtggacttttctcttttgttcctgtatattgctttgattcatgtct
ctcttcttgggttgttttatttttttgtttttgtttttttttaagaacct
tgattctcaaacctcaaactgataccggggttaaggacggctgtggtggt
gctggcctgaggcgccagtcaggactgggcgtgggaatgtgatgatgtca
tcatagctgagatcttcttgatcatgttttggggagactgaggagaatgt
gacagggtgctaagactaaaaaggcagcccctgccttcctccgtcatttg
tcatgagctccatgtttccccttggggacccctgttgtgttgacactgct
tgtaactcactctgtaaatttcaggcaaagtcctgtgtctgccatgtctg
cggcatccacctgaaccggctgcactcttgcctctactgtgtcttctttg
gctgtttcacgaagaagcacatccatgaccatgccaagtcaaagcgacac
aacctgggtaaggcgccctcctgcaggggacagggacgggcatagatagg
ctctgagtgagcatgctatctctccaaagaccccactgtgatggaatggt
ccttgtgaaactgaactcaggggctggtatcgtttgcttgaagattttac
atttcagcaaggggtttcctggttgcagtaaagtggggtcgtggaaggcc
tgcctgagcattcattgtctgctgtctgttacatgccagtggtggggggc
cagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_4405956_4406286
seq2: B6Ng01-136G04.b_115_328 (reverse)

seq1  AGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCAC  50
      |||| ||||||| ||||||  ||||||  ||||||| |||||| ||||||
seq2  AGCA-CCGACTGTTCTTCCAGAGGTCC--AGTTCAATTCCCAGAAACCAC  47

seq1  ATGGTGGCTCACAACCATCCGCAACAAGATCTGACTCCCTCTTCTGGAGT  100
      |||||| |||||||||||  | ||   | ||  |   |||||||||  ||
seq2  ATGGTGACTCACAACCATTTGTAATGGGGTCCAATATCCTCTTCTGCTGT  97

seq1  GTCTGAAGACAGCTACAGTGTACTTACATATATTAATAAAATAAA-TCTT  149
      |||  ||||||         |||| ||||| || ||  ||||||| ||||
seq2  GTCCAAAGACA---------TACTCACATACATAAAATAAATAAACTCTT  138

seq1  TAAAAAAAAAAAAAGAGTTATAATGGGTCTCTTTGATTTCTTACTACAC-  198
           ||| |||||||            | |        ||  || | | 
seq2  -----AAATAAAAAGA------------CAC-------CCTCCCTCCCCG  164

seq1  AGATAGACAGGTGCAGATGAGGTGCAGGGAGGAAGGTGATGGTCCGAGGG  248
      | | |||||    ||||  ||                             
seq2  AAAAAGACA----CAGACTAG-----------------------------  181

seq1  AAACAATGCCACATTTAATTAGCTATGCTGGGTCATCAAAGCACTTCAGG  298
               || | | |||||                            |
seq2  ---------CAGACTGAATTA----------------------------G  194

seq1  AAAAGGCTGTCTGTAACTGTGACCCATCTCTTT  331
      ||||             ||||||||||||||||
seq2  AAAA-------------TGTGACCCATCTCTTT  214

seq1: chr11_60981513_60982568
seq2: B6Ng01-136G04.g_66_1119 (reverse)

seq1  ACTGACCCCCCACCACT-GCATGTAACAGACAGCAGACAATGAATGCTCA  49
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACTGGCCCCCCACCACTGGCATGTAACAGACAGCAGACAATGAATGCTCA  50

seq1  GCCA-GCCTTTCACGACCCCACTTTACTGCAAACCAGGAAAACCCCTTGC  98
      | || ||||| ||||||||||||||||||| ||||||| |||||||||||
seq2  GGCAGGCCTTCCACGACCCCACTTTACTGC-AACCAGG-AAACCCCTTGC  98

seq1  TGAAATGTAAAAATCTTCAAGCAAACGATACCAGCCCCTTGAGTTCAGTT  148
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  TGAAATGT-AAAATCTTCAAGCAAACGATACCAGCCCC-TGAGTTCAGTT  146

seq1  TCACAAGGACCATTCCATCACAGTGGGTCTTTTGGAGAGATAGCATGCTC  198
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  TCACAAGGACCATTCCATCACAGTGGGGTCTTTGGAGAGATAGCATGCTC  196

seq1  ACTCAGAGCCTATCTATGCCCGTCCCTGTCCCCTGCAGGAGGGCGCCTTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGCCTATCTATGCCCGTCCCTGTCCCCTGCAGGAGGGCGCCTTA  246

seq1  CCCAGGTTGTGTCGCTTTGACTTGGCATGGTCATGGATGTGCTTCTTCGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTTGTGTCGCTTTGACTTGGCATGGTCATGGATGTGCTTCTTCGT  296

seq1  GAAACAGCCAAAGAAGACACAGTAGAGGCAAGAGTGCAGCCGGTTCAGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGCCAAAGAAGACACAGTAGAGGCAAGAGTGCAGCCGGTTCAGGT  346

seq1  GGATGCCGCAGACATGGCAGACACAGGACTTTGCCTGAAATTTACAGAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCGCAGACATGGCAGACACAGGACTTTGCCTGAAATTTACAGAGT  396

seq1  GAGTTACAAGCAGTGTCAACACAACAGGGGTCCCCAAGGGGAAACATGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACAAGCAGTGTCAACACAACAGGGGTCCCCAAGGGGAAACATGGA  446

seq1  GCTCATGACAAATGACGGAGGAAGGCAGGGGCTGCCTTTTTAGTCTTAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGACAAATGACGGAGGAAGGCAGGGGCTGCCTTTTTAGTCTTAGC  496

seq1  ACCCTGTCACATTCTCCTCAGTCTCCCCAAAACATGATCAAGAAGATCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCACATTCTCCTCAGTCTCCCCAAAACATGATCAAGAAGATCTC  546

seq1  AGCTATGATGACATCATCACATTCCCACGCCCAGTCCTGACTGGCGCCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGATGACATCATCACATTCCCACGCCCAGTCCTGACTGGCGCCTC  596

seq1  AGGCCAGCACCACCACAGCCGTCCTTAACCCCGGTATCAGTTTGAGGTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCACCACCACAGCCGTCCTTAACCCCGGTATCAGTTTGAGGTTT  646

seq1  GAGAATCAAGGTTCTTAAAAAAAAACAAAAACAAAAAAATAAAACAACCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCAAGGTTCTTAAAAAAAAACAAAAACAAAAAAATAAAACAACCC  696

seq1  AAGAAGAGAGACATGAATCAAAGCAATATACAGGAACAAAAGAGAAAAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGAGACATGAATCAAAGCAATATACAGGAACAAAAGAGAAAAGT  746

seq1  CCACTGTCAAGAAAGAGACCACAGAAACCCAGCAAGACAATCACAGCAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTCAAGAAAGAGACCACAGAAACCCAGCAAGACAATCACAGCAAC  796

seq1  TATGAATATAGTGGTAGGCAAGTCTAATAAATATTCACACTACCCACACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATATAGTGGTAGGCAAGTCTAATAAATATTCACACTACCCACACA  846

seq1  TATGCCAATTTGTAGCATGGTGGGTCAGGTACAGAAAGATGAAGAGGTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAATTTGTAGCATGGTGGGTCAGGTACAGAAAGATGAAGAGGTAG  896

seq1  GGAATGCTCACTGGGCAACCAGGGCACAATGTGACAGAGATATCAGCAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCTCACTGGGCAACCAGGGCACAATGTGACAGAGATATCAGCAGT  946

seq1  AAGAATGAATTGCTTACATCTGATATAAACAAAAGGCACCCAAGTTCCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGAATTGCTTACATCTGATATAAACAAAAGGCACCCAAGTTCCAT  996

seq1  CTGAAATTACTACCATACAAGCACACATACGAGCTTTCCCAAAGTCTTCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTACTACCATACAAGCACACATACGAGCTTTCCCAAAGTCTTCA  1046

seq1  TAGAATTC  1056
      ||||||||
seq2  TAGAATTC  1054